Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0009979

Physical Location & Seq

Genomic Coordinates Reverse (-)

16341950 .. 16343258

Gene Structure 1309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1205800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGTCCTGGAAACTAACACCCTTCAATAGAAACTTAAATGACGTTAAATGTGTTACACTGTTTCAAATTTGTTTTTGTATGGTTGAGCTCTGCAGAACAGCTGAAGACCACCCTGAGATTTTATTCCTGAAAGTGAACTTTGACGAGAACAAACCAATGTGCAAAAGTATGAATGTGAAGGTGCTTCCCTATTTCCACTTCTATCGTGGATCTGAGGGACAGCTTGAATCTTTTTCATGTTCACTTGCAAAGTTACAGAAGTTAAAGGATGCTATAGCATTACACAACACAGATCGTTGCAGCATTGGCCCTCCGAAGGGAGTTGGAGATCTTATATGGGAACCATCCTCAGCTCCGAAGGACAAGCCCTTAGAATCTGCCTCATCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009593 GO:0010109 GO:0016491 GO:0016667 GO:0016671 GO:0019222 GO:0031323 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051606 GO:0051775 GO:0051776 GO:0055114 GO:0065007

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

130

Amino Acids

14.62

Weight (kDa)

7.56

Isoelectric Point (pI)

35.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009979)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26160 AT4G29670 AT4G29670
fragaria_vesca	FvH4_1g07270 FvH4_2g02730
malus_domestica	MD02G1077400.v1.1 MD15G1205800.v1.1 MD15G1205900.v1.1
prunus_persica	Prupe.7G211300_v2.0.a1
pyrus_communis	pycom15g18250
rosa_chinensis	RchiOBHm_Chr2g0093171
rosa_laevigata	RLG00000016374
rosa_multiflora	Rmu_sc0003724.1_g000006 Rmu_sc0038852.1_g000002
rosa_roxburghii	Rroxscaffold_2G00148450
rosa_rugosa	Rorug02G0033400
rosa_samantha	Rh2AG079100 Rh2BG080400 Rh2CG082600 Rh2DG078100
rosa_wichuraiana	Rw2G006740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	217
AcsI	RAATTY	1 cut(s)	66
AcuI	CTGAAG	1 cut(s)	123
AfiI	CCNNNNNNNGG	2 cut(s)	316, 317
AgsI	TTSAA	3 cut(s)	25, 65, 227
AjnI	CCWGG	1 cut(s)	5
AluBI	AGCT	4 cut(s)	88, 101, 223, 353
AluI	AGCT	4 cut(s)	88, 101, 223, 353
Alw21I	GWGCWC	1 cut(s)	90
AlwI	GGATC	1 cut(s)	217
AoxI	GGCC	1 cut(s)	307
ApeKI	GCWGC	1 cut(s)	300
ApoI	RAATTY	1 cut(s)	66
AspS9I	GGNCC	1 cut(s)	308
BanII	GRGCYC	1 cut(s)	90
BbsI	GAAGAC	1 cut(s)	111
Bbv12I	GWGCWC	1 cut(s)	90
BbvCI	CCTCAGC	1 cut(s)	349
BbvI	GCAGC	1 cut(s)	312
BccI	CCATC	1 cut(s)	352
BciT130I	CCWGG	1 cut(s)	7
BfmI	CTRYAG	2 cut(s)	91, 273
BglII	AGATCT	1 cut(s)	328
BisI	GCNGC	1 cut(s)	301
BlsI	GCNGC	1 cut(s)	302
Bme1390I	CCNGG	1 cut(s)	7
BmgT120I	GGNCC	1 cut(s)	308
BmiI	GGNNCC	1 cut(s)	342
BmrFI	CCNGG	1 cut(s)	7
BmsI	GCATC	1 cut(s)	259
BpiI	GAAGAC	1 cut(s)	111
Bpu10I	CCTNAGC	1 cut(s)	349
Bsc4I	CCNNNNNNNGG	2 cut(s)	316, 317
BseBI	CCWGG	1 cut(s)	7
BseGI	GGATG	2 cut(s)	274, 344
BseLI	CCNNNNNNNGG	2 cut(s)	316, 317
BseMII	CTCAG	3 cut(s)	105, 204, 363
BseXI	GCAGC	1 cut(s)	312
BshFI	GGCC	1 cut(s)	309
BsiHKAI	GWGCWC	1 cut(s)	90
BslFI	GGGAC	1 cut(s)	231
BslI	CCNNNNNNNGG	2 cut(s)	316, 317
BsmFI	GGGAC	1 cut(s)	231
BsnI	GGCC	1 cut(s)	309
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp143I	GATC	3 cut(s)	209, 292, 328
BspANI	GGCC	1 cut(s)	309
BspCNI	CTCAG	3 cut(s)	106, 205, 362
BspLI	GGNNCC	1 cut(s)	342
BspMAI	CTGCAG	1 cut(s)	95
BspPI	GGATC	1 cut(s)	217
BssMI	GATC	3 cut(s)	209, 292, 328
Bst2UI	CCWGG	1 cut(s)	7
Bst4CI	ACNGT	1 cut(s)	60
BstDEI	CTNAG	4 cut(s)	114, 213, 349, 370
BstF5I	GGATG	2 cut(s)	274, 344
BstKTI	GATC	3 cut(s)	212, 295, 331
BstMBI	GATC	3 cut(s)	209, 292, 328
BstMWI	GCNNNNNNNGC	1 cut(s)	306
BstNI	CCWGG	1 cut(s)	7
BstSCI	CCNGG	1 cut(s)	5
BstSFI	CTRYAG	2 cut(s)	91, 273
BstV1I	GCAGC	1 cut(s)	312
BstV2I	GAAGAC	1 cut(s)	111
BstX2I	RGATCY	2 cut(s)	209, 328
BstYI	RGATCY	2 cut(s)	209, 328
BsuRI	GGCC	1 cut(s)	309
BtsCI	GGATG	2 cut(s)	274, 344
BtsIMutI	CAGTG	1 cut(s)	56
Cfr13I	GGNCC	1 cut(s)	308
CviAII	CATG	1 cut(s)	237
CviJI	RGCY	6 cut(s)	88, 101, 223, 309, 353, 367
CviKI_1	RGCY	6 cut(s)	88, 101, 223, 309, 353, 367
DdeI	CTNAG	4 cut(s)	114, 213, 349, 370
DpnI	GATC	3 cut(s)	211, 294, 330
DpnII	GATC	3 cut(s)	209, 292, 328
Ecl136II	GAGCTC	1 cut(s)	88
Eco24I	GRGCYC	1 cut(s)	90
Eco53kI	GAGCTC	1 cut(s)	88
Eco57I	CTGAAG	1 cut(s)	123
EcoICRI	GAGCTC	1 cut(s)	88
EcoRII	CCWGG	1 cut(s)	5
EcoT38I	GRGCYC	1 cut(s)	90
FaeI	CATG	1 cut(s)	240
FaiI	YATR	6 cut(s)	80, 170, 238, 275, 335, 337
FaqI	GGGAC	1 cut(s)	231
FatI	CATG	1 cut(s)	236
Fnu4HI	GCNGC	1 cut(s)	301
FokI	GGATG	2 cut(s)	281, 331
FriOI	GRGCYC	1 cut(s)	90
Fsp4HI	GCNGC	1 cut(s)	301
GluI	GCNGC	1 cut(s)	301
HaeIII	GGCC	1 cut(s)	309
Hin1II	CATG	1 cut(s)	240
HinfI	GANTC	2 cut(s)	227, 374
Hpy166II	GTNNAC	2 cut(s)	136, 242
Hpy188I	TCNGA	3 cut(s)	214, 315, 357
Hpy188III	TCNNGA	1 cut(s)	127
Hpy8I	GTNNAC	2 cut(s)	136, 242
HpyAV	CCTTC	4 cut(s)	31, 172, 310, 352
HpyCH4III	ACNGT	1 cut(s)	60
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	4 cut(s)	93, 162, 248, 300
HpyF10VI	GCNNNNNNNGC	1 cut(s)	306
HpyF3I	CTNAG	4 cut(s)	114, 213, 349, 370
HpySE526I	ACGT	1 cut(s)	42
Hsp92II	CATG	1 cut(s)	240
Kzo9I	GATC	3 cut(s)	209, 292, 328
LmnI	GCTCC	1 cut(s)	358
LpnPI	CCDG	3 cut(s)	19, 126, 140
Lsp1109I	GCAGC	1 cut(s)	312
LweI	GCATC	1 cut(s)	259
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	2 cut(s)	52, 252
MalI	GATC	3 cut(s)	211, 294, 330
MboI	GATC	3 cut(s)	209, 292, 328
MboII	GAAGA	1 cut(s)	116
MflI	RGATCY	2 cut(s)	209, 328
MhlI	GDGCHC	1 cut(s)	90
MluCI	AATT	1 cut(s)	66
MmeI	TCCRAC	1 cut(s)	304
MnlI	CCTC	3 cut(s)	208, 321, 358
MseI	TTAA	3 cut(s)	35, 45, 263
MspA1I	CMGCKG	1 cut(s)	101
MspR9I	CCNGG	1 cut(s)	7
MvaI	CCWGG	1 cut(s)	7
MwoI	GCNNNNNNNGC	1 cut(s)	306
NdeII	GATC	3 cut(s)	209, 292, 328
NlaIII	CATG	1 cut(s)	240
NlaIV	GGNNCC	1 cut(s)	342
PfeI	GAWTC	2 cut(s)	227, 374
PfoI	TCCNGGA	1 cut(s)	5
PkrI	GCNGC	1 cut(s)	302
Psp124BI	GAGCTC	1 cut(s)	90
Psp6I	CCWGG	1 cut(s)	5
PspGI	CCWGG	1 cut(s)	5
PspN4I	GGNNCC	1 cut(s)	342
PspPI	GGNCC	1 cut(s)	308
PstI	CTGCAG	1 cut(s)	95
PsuI	RGATCY	2 cut(s)	209, 328
PvuII	CAGCTG	1 cut(s)	101
SacI	GAGCTC	1 cut(s)	90
SaqAI	TTAA	3 cut(s)	35, 45, 263
SatI	GCNGC	1 cut(s)	301
Sau3AI	GATC	3 cut(s)	209, 292, 328
Sau96I	GGNCC	1 cut(s)	308
ScrFI	CCNGG	1 cut(s)	7
SduI	GDGCHC	1 cut(s)	90
SetI	ASST	6 cut(s)	45, 90, 103, 183, 225, 355
SfaNI	GCATC	1 cut(s)	259
SfcI	CTRYAG	2 cut(s)	91, 273
Sse9I	AATT	1 cut(s)	66
SstI	GAGCTC	1 cut(s)	90
StyD4I	CCNGG	1 cut(s)	5
TaaI	ACNGT	1 cut(s)	60
TaiI	ACGT	1 cut(s)	45
TasI	AATT	1 cut(s)	66
TfiI	GAWTC	2 cut(s)	227, 374
Tru1I	TTAA	3 cut(s)	35, 45, 263
Tru9I	TTAA	3 cut(s)	35, 45, 263
TscAI	CASTG	1 cut(s)	63
TseI	GCWGC	1 cut(s)	300
TspDTI	ATGAA	2 cut(s)	185, 225
TspRI	CASTG	1 cut(s)	63
XapI	RAATTY	1 cut(s)	66
XcmI	CCANNNNNNNNNTGG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.