Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0009979

Physical Location & Seq

Genomic Coordinates Reverse (-)

16343261 .. 16344758

Gene Structure 1498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1205900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGCTGATGTTTTGAGATCACCATTCCATTCACTTCGTTTCTCTTCGTCTCTGCTCACCTCGTTCGCCTCCTCTTTCAATTCTCTGCAACCGGGCCTCCCAGCCAATCAAAACCCGTACAGGAGGGTTTATCCCCTTTCGTATTCGTCTGTCGCTCCCTTTGCTTTCAGAACCAGAAAGCAGTTGGTTAGTTTCAAGGTGCAGGCTACTGTTGCTGAAAAAGATAAAGACCAGCCAAAATGGTGGGAAAGAAGTGTTCCAAATATGGTCGACATTCATTCTACTCCAGAGTTTTTGAGTGCTTTAGCCCAAGCTGGTGATAGATTAGTTATTGTAGAATTCTATGGGACTTGGTGTGCTTCTTGCCGTGCATTGTTTCCTAAGTTGTTTGACTTAAACAAAGCAGTGAAGAAGGTAATGTCCATACGCATATATGTGAATACATACGGGTATTATAGGACTGGTGTCATTGAAACCTTCCTGGTTTATTCTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009593 GO:0010109 GO:0016491 GO:0016667 GO:0016671 GO:0019222 GO:0031323 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051606 GO:0051775 GO:0051776 GO:0055114 GO:0065007

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

166

Amino Acids

18.84

Weight (kDa)

9.64

Isoelectric Point (pI)

47.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	93 - 140	1e-07	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009979)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26160 AT4G29670 AT4G29670
fragaria_vesca	FvH4_1g07270 FvH4_2g02730
malus_domestica	MD02G1077400.v1.1 MD15G1205800.v1.1 MD15G1205900.v1.1
prunus_persica	Prupe.7G211300_v2.0.a1
pyrus_communis	pycom15g18250
rosa_chinensis	RchiOBHm_Chr2g0093171
rosa_laevigata	RLG00000016374
rosa_multiflora	Rmu_sc0003724.1_g000006 Rmu_sc0038852.1_g000002
rosa_roxburghii	Rroxscaffold_2G00148450
rosa_rugosa	Rorug02G0033400
rosa_samantha	Rh2AG079100 Rh2BG080400 Rh2CG082600 Rh2DG078100
rosa_wichuraiana	Rw2G006740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	270
AcsI	RAATTY	1 cut(s)	338
AfaI	GTAC	1 cut(s)	119
AgsI	TTSAA	3 cut(s)	79, 196, 473
AjnI	CCWGG	1 cut(s)	480
AluBI	AGCT	1 cut(s)	314
AluI	AGCT	1 cut(s)	314
Alw26I	GTCTC	1 cut(s)	54
AoxI	GGCC	1 cut(s)	94
ApoI	RAATTY	1 cut(s)	338
AspS9I	GGNCC	1 cut(s)	94
AsuC2I	CCSGG	1 cut(s)	93
AsuHPI	GGTGA	3 cut(s)	12, 49, 329
BceAI	ACGGC	1 cut(s)	351
BciT130I	CCWGG	1 cut(s)	482
BcnI	CCSGG	1 cut(s)	93
BcoDI	GTCTC	1 cut(s)	54
Bme1390I	CCNGG	2 cut(s)	93, 482
BmgT120I	GGNCC	1 cut(s)	94
BmrFI	CCNGG	2 cut(s)	93, 482
BoxI	GACNNNNGTC	1 cut(s)	464
BpmI	CTGGAG	1 cut(s)	270
BpuMI	CCSGG	1 cut(s)	93
BsaXI	ACNNNNNCTCC	2 cut(s)	81, 111
Bse1I	ACTGG	1 cut(s)	466
BseBI	CCWGG	1 cut(s)	482
BseNI	ACTGG	1 cut(s)	466
BseRI	GAGGAG	1 cut(s)	61
BseYI	CCCAGC	1 cut(s)	100
BsgI	GTGCAG	1 cut(s)	221
BshFI	GGCC	1 cut(s)	96
BsiSI	CCGG	1 cut(s)	92
BslFI	GGGAC	1 cut(s)	361
BsmAI	GTCTC	1 cut(s)	54
BsmBI	CGTCTC	1 cut(s)	54
BsmFI	GGGAC	1 cut(s)	361
BsnI	GGCC	1 cut(s)	96
Bsp143I	GATC	1 cut(s)	17
BspANI	GGCC	1 cut(s)	96
BsrI	ACTGG	1 cut(s)	466
BssMI	GATC	1 cut(s)	17
Bst2UI	CCWGG	1 cut(s)	482
Bst4CI	ACNGT	1 cut(s)	211
Bst6I	CTCTTC	1 cut(s)	49
BstC8I	GCNNGC	1 cut(s)	204
BstDEI	CTNAG	1 cut(s)	381
BstKTI	GATC	1 cut(s)	20
BstMAI	GTCTC	1 cut(s)	54
BstMBI	GATC	1 cut(s)	17
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 212
BstNI	CCWGG	1 cut(s)	482
BstPAI	GACNNNNGTC	1 cut(s)	464
BstSCI	CCNGG	2 cut(s)	91, 480
BstXI	CCANNNNNNTGG	1 cut(s)	243
BsuRI	GGCC	1 cut(s)	96
BtsI	GCAGTG	1 cut(s)	411
BtsIMutI	CAGTG	1 cut(s)	411
Cac8I	GCNNGC	1 cut(s)	204
Cfr13I	GGNCC	1 cut(s)	94
Csp6I	GTAC	1 cut(s)	118
CviJI	RGCY	7 cut(s)	5, 96, 104, 206, 235, 308, 314
CviKI_1	RGCY	7 cut(s)	5, 96, 104, 206, 235, 308, 314
CviQI	GTAC	1 cut(s)	118
DdeI	CTNAG	1 cut(s)	381
DpnI	GATC	1 cut(s)	19
DpnII	GATC	1 cut(s)	17
Eam1104I	CTCTTC	1 cut(s)	49
EarI	CTCTTC	1 cut(s)	49
EcoRI	GAATTC	1 cut(s)	338
EcoRII	CCWGG	1 cut(s)	480
Esp3I	CGTCTC	1 cut(s)	54
FaiI	YATR	8 cut(s)	266, 345, 425, 431, 433, 435, 445, 456
FaqI	GGGAC	1 cut(s)	361
FblI	GTMKAC	1 cut(s)	270
GsaI	CCCAGC	1 cut(s)	104
GsuI	CTGGAG	1 cut(s)	270
HaeIII	GGCC	1 cut(s)	96
HapII	CCGG	1 cut(s)	92
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HpaII	CCGG	1 cut(s)	92
HphI	GGTGA	3 cut(s)	12, 49, 329
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188I	TCNGA	1 cut(s)	170
Hpy188III	TCNNGA	1 cut(s)	287
Hpy8I	GTNNAC	1 cut(s)	271
HpyAV	CCTTC	2 cut(s)	406, 487
HpyCH4III	ACNGT	1 cut(s)	211
HpyCH4V	TGCA	3 cut(s)	88, 202, 371
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 212
HpyF3I	CTNAG	1 cut(s)	381
Kzo9I	GATC	1 cut(s)	17
LmnI	GCTCC	1 cut(s)	160
MalI	GATC	1 cut(s)	19
MboI	GATC	1 cut(s)	17
MboII	GAAGA	2 cut(s)	36, 421
MluCI	AATT	2 cut(s)	79, 338
MnlI	CCTC	5 cut(s)	70, 79, 82, 107, 117
MseI	TTAA	1 cut(s)	395
MslI	CAYNNNNRTG	1 cut(s)	434
MspI	CCGG	1 cut(s)	92
MspR9I	CCNGG	2 cut(s)	93, 482
MvaI	CCWGG	1 cut(s)	482
MwoI	GCNNNNNNNGC	2 cut(s)	161, 212
NciI	CCSGG	1 cut(s)	93
NdeII	GATC	1 cut(s)	17
PshAI	GACNNNNGTC	1 cut(s)	464
Psp6I	CCWGG	1 cut(s)	480
PspFI	CCCAGC	1 cut(s)	100
PspGI	CCWGG	1 cut(s)	480
PspPI	GGNCC	1 cut(s)	94
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
RseI	CAYNNNNRTG	1 cut(s)	434
SalI	GTCGAC	1 cut(s)	269
SaqAI	TTAA	1 cut(s)	395
Sau3AI	GATC	1 cut(s)	17
Sau96I	GGNCC	1 cut(s)	94
ScrFI	CCNGG	2 cut(s)	93, 482
SetI	ASST	5 cut(s)	62, 201, 316, 417, 479
SmiMI	CAYNNNNRTG	1 cut(s)	434
Sse9I	AATT	2 cut(s)	79, 338
StyD4I	CCNGG	2 cut(s)	91, 480
TaaI	ACNGT	1 cut(s)	211
TaqI	TCGA	1 cut(s)	270
TasI	AATT	2 cut(s)	79, 338
Tru1I	TTAA	1 cut(s)	395
Tru9I	TTAA	1 cut(s)	395
TscAI	CASTG	1 cut(s)	411
TspDTI	ATGAA	1 cut(s)	266
TspRI	CASTG	1 cut(s)	411
XapI	RAATTY	1 cut(s)	338
XcmI	CCANNNNNNNNNTGG	1 cut(s)	181
XmiI	GTMKAC	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.