FvH4_2g04170

Mitotic checkpoint protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
3273655 .. 3277584
3930 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g04170.t2

Sequence Viewer

Length: 1026 bp
ATGACAGCTGTCCCTCCGCCGTCCTCCGGCCAAGAGCTCTCCAACCCGCCCACCGACGGCGTCTCCAACCTCCGCTTCTCCAACCACAGCGATCACCTGCTCGTCTCCTCTTGGGATAGGACCGTCCGATTGTACGACGCCACCGCCAATGTGCTCCGCGGCGAGTTCAGTCACGGCAGTCCCGTCCTCGATTGCTGCTTCCACGACGACTCCTCCGGCTTCAGCGCCAGCGCCGACAACACCGTCCGCCGATTCGTCTTCAACTCGAACAAGGAAGATATAATAGGAAAGCACGATGCGCCGGTTCGCTGCGTTGAGTACTCGTATGCCGCAGGGCAACTGATCACCGGTAGTTGGGATAAGACACTCAAGTGTTGGGATCCTAGAGGTGCAAATGGACAAGAGCGTACTCTTATTGGGACTTATCAACAACCGGAGCGTGTTTATTCGCTTTCTCTGGTCGGAAATCGTTTAGTGGTTGCAACTGCTGGAAGACATGTGAATGTCTACGATTTGAGAAACATGTCACAACCTGAGCAACGAAGGGAATCTTCATTGAAGTATCAAACTCGATGCGTGCGCTGCTATCCTAATGGAACAGGTTATGCTCTTAGTTCTGTTGAAGGACGGGTTGCAATGGAATTCTTTGATCTCTCAGAGGCCAGTCAAACCAAAAAATATGCATTCAAGTGTCATAGAAAATCGGAGGCCGGAAGAGACATTGTATATCCAGTAAATGCAATTGCATTTCACCCCATATATGGTACGTTTGCTACCGGAGGTTGTGATGGTTATGTGAATGTATGGGATGGGAACAACAAAAAGCGGCTATATCAGTACTCCAAGTATCCAACAAGCATTGCAGCTCTTTCTTTTAGCAGAGACGGCCGCCTGTTGGCTGTGGCTTCGAGTTACACTTTTGAGGAGGGAGAAAAACCTCATGAGCCAGATGCAATCTTTGTTCGCAATGTCAATGAGATAGAGGTCAAGCCAAAGCCAAAAGTCTACCCTAATCCGCCGGCATAA
Functional Annotation

Protein Analysis

342

Amino Acids

38.03

Weight (kDa)

8.32

Isoelectric Point (pI)

40.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_CDC20-Fz PF24807 17 - 132 7e-06 CDC20/Fizzy WD40 domain
Beta-prop_WDR5 PF25175 18 - 231 3.7e-18 WDR5 beta-propeller domain
WD40_Prp19 PF24814 19 - 232 2.3e-11 Prp19 WD40 domain
WD40_WDHD1_1st PF24817 19 - 128 5.4e-09 WDHD1 first WD40 domain
Beta-prop_WDR3_2nd PF25172 19 - 165 8.3e-07 WDR3 second beta-propeller domain
Beta-prop_WDR3_1st PF25173 20 - 127 2e-08 WDR3 first beta-propeller domain
Beta-prop_THOC3 PF25174 75 - 223 8.3e-12 THOC3 beta-propeller domain
WD40 PF00400 97 - 127 7.4e-06 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012239)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 105
AasI GACNNNNNNGTC 1 cut(s) 242
Acc36I ACCTGC 1 cut(s) 105
AccI GTMKAC 2 cut(s) 507, 1005
AccII CGCG 1 cut(s) 159
AclWI GGATC 2 cut(s) 374, 387
AcoI YGGCCR 2 cut(s) 28, 886
AcsI RAATTY 1 cut(s) 641
AcuI CTGAAG 1 cut(s) 205
AcyI GRCGYC 2 cut(s) 60, 138
AfaI GTAC 5 cut(s) 134, 320, 409, 766, 839
AfiI CCNNNNNNNGG 5 cut(s) 26, 56, 354, 761, 895
AflIII ACRYGT 2 cut(s) 496, 522
AgeI ACCGGT 1 cut(s) 347
AgsI TTSAA 4 cut(s) 262, 559, 623, 688
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AleI CACNNNNGTG 1 cut(s) 370
AluBI AGCT 3 cut(s) 8, 37, 866
AluI AGCT 3 cut(s) 8, 37, 866
Alw21I GWGCWC 2 cut(s) 39, 156
Alw26I GTCTC 4 cut(s) 67, 109, 711, 876
AlwI GGATC 2 cut(s) 374, 387
AoxI GGCC 4 cut(s) 28, 660, 708, 886
ApeKI GCWGC 4 cut(s) 195, 309, 582, 863
ApoI RAATTY 1 cut(s) 641
AsiGI ACCGGT 1 cut(s) 347
AspLEI GCGC 4 cut(s) 227, 233, 301, 582
AspS9I GGNCC 1 cut(s) 120
AsuHPI GGTGA 3 cut(s) 86, 337, 743
AvaII GGWCC 1 cut(s) 120
BamHI GGATCC 1 cut(s) 379
BanII GRGCYC 1 cut(s) 39
BbsI GAAGAC 2 cut(s) 250, 499
Bbv12I GWGCWC 2 cut(s) 39, 156
BbvI GCAGC 4 cut(s) 182, 296, 569, 875
BccI CCATC 2 cut(s) 782, 803
BceAI ACGGC 4 cut(s) 4, 73, 190, 901
BciVI GTATCC 1 cut(s) 858
BclI TGATCA 1 cut(s) 342
BcoDI GTCTC 4 cut(s) 67, 109, 711, 876
BfaI CTAG 1 cut(s) 384
BfoI RGCGCY 2 cut(s) 228, 234
BfuAI ACCTGC 1 cut(s) 105
BfuI GTATCC 1 cut(s) 858
BisI GCNGC 8 cut(s) 160, 196, 310, 330, 583, 827, 864, 889
BlsI GCNGC 8 cut(s) 161, 197, 311, 331, 584, 828, 865, 890
BmcAI AGTACT 2 cut(s) 320, 839
Bme18I GGWCC 1 cut(s) 120
BmgT120I GGNCC 1 cut(s) 120
BmiI GGNNCC 1 cut(s) 381
BmsI GCATC 3 cut(s) 286, 563, 940
BoxI GACNNNNGTC 1 cut(s) 8
BpiI GAAGAC 2 cut(s) 250, 499
Bpu10I CCTNAGC 1 cut(s) 534
BpuEI CTTGAG 1 cut(s) 353
BsaHI GRCGYC 2 cut(s) 60, 138
BsaJI CCNNGG 1 cut(s) 157
BsaWI WCCGGW 3 cut(s) 347, 433, 776
BsaXI ACNNNNNCTCC 6 cut(s) 47, 77, 194, 197, 224, 227
Bsc4I CCNNNNNNNGG 5 cut(s) 26, 56, 354, 761, 895
Bse118I RCCGGY 3 cut(s) 301, 347, 1018
Bse1I ACTGG 2 cut(s) 663, 731
Bse3DI GCAATG 3 cut(s) 642, 858, 973
BseDI CCNNGG 1 cut(s) 157
BseGI GGATG 1 cut(s) 814
BseLI CCNNNNNNNGG 5 cut(s) 26, 56, 354, 761, 895
BseMI GCAATG 3 cut(s) 642, 858, 973
BseMII CTCAG 2 cut(s) 525, 669
BseNI ACTGG 2 cut(s) 663, 731
BseRI GAGGAG 3 cut(s) 97, 202, 938
BseX3I CGGCCG 1 cut(s) 886
BseXI GCAGC 4 cut(s) 182, 296, 569, 875
Bsh1236I CGCG 1 cut(s) 159
Bsh1285I CGRYCG 1 cut(s) 889
BshFI GGCC 4 cut(s) 30, 662, 710, 888
BshTI ACCGGT 1 cut(s) 347
BsiEI CGRYCG 1 cut(s) 889
BsiHKAI GWGCWC 2 cut(s) 39, 156
BsiSI CCGG 8 cut(s) 27, 216, 302, 348, 434, 711, 777, 1019
BslFI GGGAC 2 cut(s) 165, 433
BslI CCNNNNNNNGG 5 cut(s) 26, 56, 354, 761, 895
BsmAI GTCTC 4 cut(s) 67, 109, 711, 876
BsmBI CGTCTC 3 cut(s) 67, 109, 876
BsmFI GGGAC 2 cut(s) 165, 433
BsmI GAATGC 1 cut(s) 683
BsnI GGCC 4 cut(s) 30, 662, 710, 888
Bsp1286I GDGCHC 2 cut(s) 39, 156
Bsp143I GATC 4 cut(s) 91, 342, 379, 649
BspANI GGCC 4 cut(s) 30, 662, 710, 888
BspCNI CTCAG 2 cut(s) 526, 668
BspFNI CGCG 1 cut(s) 159
BspHI TCATGA 1 cut(s) 940
BspLI GGNNCC 1 cut(s) 381
BspMI ACCTGC 1 cut(s) 105
BspPI GGATC 2 cut(s) 374, 387
BsrDI GCAATG 3 cut(s) 642, 858, 973
BsrFI RCCGGY 3 cut(s) 301, 347, 1018
BsrI ACTGG 2 cut(s) 663, 731
BssAI RCCGGY 3 cut(s) 301, 347, 1018
BssECI CCNNGG 1 cut(s) 157
BssMI GATC 4 cut(s) 91, 342, 379, 649
BssNI GRCGYC 2 cut(s) 60, 138
Bst4CI ACNGT 2 cut(s) 124, 244
Bst6I CTCTTC 1 cut(s) 709
BstACI GRCGYC 2 cut(s) 60, 138
BstC8I GCNNGC 3 cut(s) 229, 578, 1020
BstDEI CTNAG 3 cut(s) 534, 611, 655
BstDSI CCRYGG 1 cut(s) 157
BstF5I GGATG 1 cut(s) 814
BstFNI CGCG 1 cut(s) 159
BstH2I RGCGCY 2 cut(s) 228, 234
BstHHI GCGC 4 cut(s) 227, 233, 301, 582
BstKTI GATC 4 cut(s) 94, 345, 382, 652
BstMAI GTCTC 4 cut(s) 67, 109, 711, 876
BstMBI GATC 4 cut(s) 91, 342, 379, 649
BstMCI CGRYCG 1 cut(s) 889
BstMWI GCNNNNNNNGC 3 cut(s) 298, 582, 885
BstNSI RCATGY 2 cut(s) 500, 526
BstPAI GACNNNNGTC 1 cut(s) 8
BstUI CGCG 1 cut(s) 159
BstV1I GCAGC 4 cut(s) 182, 296, 569, 875
BstV2I GAAGAC 2 cut(s) 250, 499
BstX2I RGATCY 1 cut(s) 379
BstYI RGATCY 1 cut(s) 379
BstZI CGGCCG 1 cut(s) 886
BsuI GTATCC 1 cut(s) 858
BsuRI GGCC 4 cut(s) 30, 662, 710, 888
BtgI CCRYGG 1 cut(s) 157
BtsCI GGATG 1 cut(s) 814
BveI ACCTGC 1 cut(s) 105
Cac8I GCNNGC 3 cut(s) 229, 578, 1020
CciI TCATGA 1 cut(s) 940
CfoI GCGC 4 cut(s) 227, 233, 301, 582
Cfr10I RCCGGY 3 cut(s) 301, 347, 1018
Cfr13I GGNCC 1 cut(s) 120
Cfr42I CCGCGG 1 cut(s) 160
CseI GACGC 2 cut(s) 49, 146
Csp6I GTAC 5 cut(s) 133, 319, 408, 765, 838
CspAI ACCGGT 1 cut(s) 347
CviAII CATG 3 cut(s) 497, 523, 941
CviQI GTAC 5 cut(s) 133, 319, 408, 765, 838
DdeI CTNAG 3 cut(s) 534, 611, 655
DpnI GATC 4 cut(s) 93, 344, 381, 651
DpnII GATC 4 cut(s) 91, 342, 379, 649
DrdI GACNNNNNNGTC 1 cut(s) 242
DseDI GACNNNNNNGTC 1 cut(s) 242
EaeI YGGCCR 2 cut(s) 28, 886
EagI CGGCCG 1 cut(s) 886
Eam1104I CTCTTC 1 cut(s) 709
EarI CTCTTC 1 cut(s) 709
EciI GGCGGA 3 cut(s) 6, 236, 1005
Ecl136II GAGCTC 1 cut(s) 37
EclXI CGGCCG 1 cut(s) 886
Eco24I GRGCYC 1 cut(s) 39
Eco47I GGWCC 1 cut(s) 120
Eco52I CGGCCG 1 cut(s) 886
Eco53kI GAGCTC 1 cut(s) 37
Eco57I CTGAAG 1 cut(s) 205
EcoICRI GAGCTC 1 cut(s) 37
EcoRI GAATTC 1 cut(s) 641
EcoT22I ATGCAT 1 cut(s) 685
EcoT38I GRGCYC 1 cut(s) 39
Esp3I CGTCTC 3 cut(s) 67, 109, 876
FaeI CATG 3 cut(s) 500, 526, 944
FalI AAGNNNNNCTT 2 cut(s) 535, 567
FaqI GGGAC 2 cut(s) 165, 433
FatI CATG 3 cut(s) 496, 522, 940
FauI CCCGC 1 cut(s) 54
FbaI TGATCA 1 cut(s) 342
FblI GTMKAC 2 cut(s) 507, 1005
Fnu4HI GCNGC 8 cut(s) 160, 196, 310, 330, 583, 827, 864, 889
FokI GGATG 1 cut(s) 821
FriOI GRGCYC 1 cut(s) 39
Fsp4HI GCNGC 8 cut(s) 160, 196, 310, 330, 583, 827, 864, 889
FspBI CTAG 1 cut(s) 384
GlaI GCGC 4 cut(s) 226, 232, 300, 581
GluI GCNGC 8 cut(s) 160, 196, 310, 330, 583, 827, 864, 889
HaeII RGCGCY 2 cut(s) 228, 234
HaeIII GGCC 4 cut(s) 30, 662, 710, 888
HapII CCGG 8 cut(s) 27, 216, 302, 348, 434, 711, 777, 1019
HgaI GACGC 2 cut(s) 49, 146
HhaI GCGC 4 cut(s) 227, 233, 301, 582
Hin1I GRCGYC 2 cut(s) 60, 138
Hin1II CATG 3 cut(s) 500, 526, 944
Hin6I GCGC 4 cut(s) 225, 231, 299, 580
HinP1I GCGC 4 cut(s) 225, 231, 299, 580
HinfI GANTC 3 cut(s) 209, 252, 548
HpaII CCGG 8 cut(s) 27, 216, 302, 348, 434, 711, 777, 1019
HphI GGTGA 3 cut(s) 86, 337, 743
Hpy166II GTNNAC 2 cut(s) 508, 1006
Hpy188I TCNGA 4 cut(s) 128, 464, 658, 706
Hpy188III TCNNGA 1 cut(s) 941
Hpy8I GTNNAC 2 cut(s) 508, 1006
Hpy99I CGWCG 3 cut(s) 59, 140, 209
HpyAV CCTTC 2 cut(s) 537, 617
HpyCH4III ACNGT 2 cut(s) 124, 244
HpyCH4IV ACGT 1 cut(s) 767
HpyCH4V TGCA 8 cut(s) 392, 482, 635, 683, 740, 746, 863, 953
HpyF10VI GCNNNNNNNGC 3 cut(s) 298, 582, 885
HpyF3I CTNAG 3 cut(s) 534, 611, 655
HpySE526I ACGT 1 cut(s) 767
Hsp92I GRCGYC 2 cut(s) 60, 138
Hsp92II CATG 3 cut(s) 500, 526, 944
HspAI GCGC 4 cut(s) 225, 231, 299, 580
KroI GCCGGC 1 cut(s) 1018
KroNI GCCGGC 1 cut(s) 1020
Ksp22I TGATCA 1 cut(s) 342
KspI CCGCGG 1 cut(s) 160
Kzo9I GATC 4 cut(s) 91, 342, 379, 649
LmnI GCTCC 2 cut(s) 159, 436
Lsp1109I GCAGC 4 cut(s) 182, 296, 569, 875
LweI GCATC 3 cut(s) 286, 563, 940
MaeI CTAG 1 cut(s) 384
MaeII ACGT 1 cut(s) 767
MaeIII GTNAC 3 cut(s) 170, 525, 911
MalI GATC 4 cut(s) 93, 344, 381, 651
MboI GATC 4 cut(s) 91, 342, 379, 649
MboII GAAGA 5 cut(s) 250, 287, 504, 543, 726
MfeI CAATTG 1 cut(s) 741
MflI RGATCY 1 cut(s) 379
MhlI GDGCHC 2 cut(s) 39, 156
MluCI AATT 2 cut(s) 641, 741
MlyI GAGTC 1 cut(s) 203
MmeI TCCRAC 5 cut(s) 66, 90, 105, 442, 875
Mph1103I ATGCAT 1 cut(s) 685
MroNI GCCGGC 1 cut(s) 1018
MslI CAYNNNNRTG 3 cut(s) 370, 501, 688
MspA1I CMGCKG 2 cut(s) 8, 159
MspI CCGG 8 cut(s) 27, 216, 302, 348, 434, 711, 777, 1019
MunI CAATTG 1 cut(s) 741
Mva1269I GAATGC 1 cut(s) 683
MvnI CGCG 1 cut(s) 159
MwoI GCNNNNNNNGC 3 cut(s) 298, 582, 885
NaeI GCCGGC 1 cut(s) 1020
NdeII GATC 4 cut(s) 91, 342, 379, 649
NgoMIV GCCGGC 1 cut(s) 1018
NlaIII CATG 3 cut(s) 500, 526, 944
NlaIV GGNNCC 1 cut(s) 381
NmuCI GTSAC 2 cut(s) 170, 525
NsiI ATGCAT 1 cut(s) 685
NspI RCATGY 2 cut(s) 500, 526
OliI CACNNNNGTG 1 cut(s) 370
PagI TCATGA 1 cut(s) 940
PaqCI CACCTGC 1 cut(s) 105
PciI ACATGT 2 cut(s) 496, 522
PcsI WCGNNNNNNNCGW 1 cut(s) 180
PctI GAATGC 1 cut(s) 683
PdiI GCCGGC 1 cut(s) 1020
PfeI GAWTC 2 cut(s) 252, 548
PflFI GACNNNGTC 1 cut(s) 59
PinAI ACCGGT 1 cut(s) 347
PkrI GCNGC 8 cut(s) 161, 197, 311, 331, 584, 828, 865, 890
PleI GAGTC 1 cut(s) 203
PpsI GAGTC 1 cut(s) 203
PscI ACATGT 2 cut(s) 496, 522
PshAI GACNNNNGTC 1 cut(s) 8
Psp124BI GAGCTC 1 cut(s) 39
PspN4I GGNNCC 1 cut(s) 381
PspPI GGNCC 1 cut(s) 120
PsuI RGATCY 1 cut(s) 379
PsyI GACNNNGTC 1 cut(s) 59
PvuII CAGCTG 1 cut(s) 8
RsaI GTAC 5 cut(s) 134, 320, 409, 766, 839
RsaNI GTAC 5 cut(s) 133, 319, 408, 765, 838
RseI CAYNNNNRTG 3 cut(s) 370, 501, 688
SacI GAGCTC 1 cut(s) 39
SacII CCGCGG 1 cut(s) 160
SatI GCNGC 8 cut(s) 160, 196, 310, 330, 583, 827, 864, 889
Sau3AI GATC 4 cut(s) 91, 342, 379, 649
Sau96I GGNCC 1 cut(s) 120
ScaI AGTACT 2 cut(s) 320, 839
SchI GAGTC 1 cut(s) 203
SduI GDGCHC 2 cut(s) 39, 156
SfaNI GCATC 3 cut(s) 286, 563, 940
Sfr303I CCGCGG 1 cut(s) 160
SgrBI CCGCGG 1 cut(s) 160
SinI GGWCC 1 cut(s) 120
SmiMI CAYNNNNRTG 3 cut(s) 370, 501, 688
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
Sse9I AATT 2 cut(s) 641, 741
SspMI CTAG 1 cut(s) 384
SstI GAGCTC 1 cut(s) 39
TaaI ACNGT 2 cut(s) 124, 244
TaiI ACGT 1 cut(s) 770
TaqI TCGA 4 cut(s) 189, 266, 571, 908
TasI AATT 2 cut(s) 641, 741
TatI WGTACW 2 cut(s) 318, 837
TauI GCSGC 4 cut(s) 162, 332, 829, 891
TfiI GAWTC 2 cut(s) 252, 548
TseFI GTSAC 2 cut(s) 170, 525
TseI GCWGC 4 cut(s) 195, 309, 582, 863
Tsp45I GTSAC 2 cut(s) 170, 525
TspDTI ATGAA 1 cut(s) 543
Tth111I GACNNNGTC 1 cut(s) 59
VpaK11BI GGWCC 1 cut(s) 120
XapI RAATTY 1 cut(s) 641
XceI RCATGY 2 cut(s) 500, 526
XmiI GTMKAC 2 cut(s) 507, 1005
XspI CTAG 1 cut(s) 384
ZrmI AGTACT 2 cut(s) 320, 839
Zsp2I ATGCAT 1 cut(s) 685
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.