Rw6G005330

Mitotic checkpoint protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
8554570 .. 8557619
3050 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G005330.1

Sequence Viewer

Length: 1026 bp
ATGACAGCTGTCCCTCCGCCGTCCTCCGGCCGAGAGCTCTCCAACCCCCCCGCCGACGGCGTCTCCAACCTCCGCTTCTCCAACCACAGCGATCACCTGCTCGTCTCCTCTTGGGATAAGACCGTCCGATTGTACGACGCCACCGCCAATGTGCTCCGCGGAGAGTTCACTCACGGCAGCCCCGTTCTCGATTGCTGCTTCCACGACGACTCCTCCGGCTTCAGCGCCAGCGCCGACAACACCGTCCGCAGATTCGTTTTCAACTCCAATAAGGAAGATATTATAGGAAAGCACGACGCACCGGTTCGTTGCGTTGAGTACTCGTATGCAGCAGGGCAACTGATCACCGGCAGTTGGGATAAGACACTCAAGTGTTGGGATCCTAGAGGGGCAAATGGACAAGAGCGTACTCTTGTTGGGACTTATCAACAGCCGGAGCGTGTTTATTCTCTTTCTCTGGTCGGAAATCGTTTAGTGGTTGCAACTGCTGGAAGACATGTGAATGTCTATGATCTGAGAAATATGTCACAGCCTGAGCAACGAAGGGAGTCTTCATTGAAGTATCAAACTCGATGTGTGCGCTGTTATCCTAACGGAACTGGTTATGCTCTTAGTTCTGTTGAAGGACGGGTTGCAATGGAATTCTTTGATCTCTCAGAGGCTAGTCAAACCAAAAAATATGCATTCAAGTGTCATAGAAAATCAGAGGCTGGAAGGGACATTGTATATCCAGTAAATGCAATTGCATTCCATCCCATATATGGTACGTTTGCTACTGGAGGTTGTGATGGCTATGTGAATGTATGGGATGGGAACAACAAAAAGCGGCTATATCAGTACTCCAAGTATCCAACGAGCATTGCAGCTCTTTCTTTTAGCAGAGACGGCCGCCTATTGGCTGTGGCTTCAAGTTACACATTTGAGGAGGGAGAAAAACCTCATGAGCCAGACGCGATCTTTGTTCGCAGTGTCAATGAGATAGAGGTCAAGCCAAAGCCAAAAGTCTACCCTAATCCGCCAGCATAA
Functional Annotation

Protein Analysis

341

Amino Acids

37.98

Weight (kDa)

8.51

Isoelectric Point (pI)

40.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR5 PF25175 19 - 231 1e-17 WDR5 beta-propeller domain
WD40_Prp19 PF24814 19 - 232 1.1e-11 Prp19 WD40 domain
WD40_WDHD1_1st PF24817 19 - 128 1.5e-08 WDHD1 first WD40 domain
Beta-prop_WDR3_2nd PF25172 19 - 165 1.5e-06 WDR3 second beta-propeller domain
Beta-prop_WDR3_1st PF25173 20 - 127 4.2e-08 WDR3 first beta-propeller domain
Beta-prop_THOC3 PF25174 75 - 304 1.2e-24 THOC3 beta-propeller domain
WD40_CDC20-Fz PF24807 138 - 295 6.1e-07 CDC20/Fizzy WD40 domain
WD40_WDHD1_1st PF24817 146 - 293 2.4e-06 WDHD1 first WD40 domain
Beta-prop_WDR3_1st PF25173 157 - 304 2.8e-08 WDR3 first beta-propeller domain
WD40_Prp19 PF24814 242 - 304 3.2e-06 Prp19 WD40 domain
Beta-prop_EML_2 PF23414 247 - 303 3.1e-06 Echinoderm microtubule-associated protein second beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012239)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 105
AasI GACNNNNNNGTC 1 cut(s) 242
Acc36I ACCTGC 1 cut(s) 105
AccI GTMKAC 1 cut(s) 1005
AccII CGCG 2 cut(s) 159, 953
AclWI GGATC 2 cut(s) 374, 387
AcoI YGGCCR 2 cut(s) 28, 886
AcsI RAATTY 1 cut(s) 641
AcuI CTGAAG 1 cut(s) 205
AcyI GRCGYC 2 cut(s) 60, 138
AfaI GTAC 5 cut(s) 134, 320, 409, 766, 839
AfiI CCNNNNNNNGG 5 cut(s) 26, 56, 354, 761, 895
AflIII ACRYGT 1 cut(s) 496
AgeI ACCGGT 1 cut(s) 301
AgsI TTSAA 5 cut(s) 262, 559, 623, 688, 909
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AleI CACNNNNGTG 1 cut(s) 370
AluBI AGCT 3 cut(s) 8, 37, 866
AluI AGCT 3 cut(s) 8, 37, 866
Alw21I GWGCWC 2 cut(s) 39, 156
Alw26I GTCTC 3 cut(s) 67, 109, 876
AlwI GGATC 2 cut(s) 374, 387
AlwNI CAGNNNCTG 1 cut(s) 710
AoxI GGCC 2 cut(s) 28, 886
ApeKI GCWGC 4 cut(s) 177, 195, 329, 863
ApoI RAATTY 1 cut(s) 641
ArsI GACNNNNNNTTYG 2 cut(s) 941, 973
AsiGI ACCGGT 1 cut(s) 301
AspLEI GCGC 3 cut(s) 227, 233, 582
AsuHPI GGTGA 2 cut(s) 86, 337
BamHI GGATCC 1 cut(s) 379
BanII GRGCYC 1 cut(s) 39
BbsI GAAGAC 2 cut(s) 499, 543
Bbv12I GWGCWC 2 cut(s) 39, 156
BbvI GCAGC 4 cut(s) 182, 189, 341, 875
BccI CCATC 3 cut(s) 759, 782, 803
BceAI ACGGC 4 cut(s) 4, 73, 190, 901
BciVI GTATCC 1 cut(s) 858
BclI TGATCA 1 cut(s) 342
BcoDI GTCTC 3 cut(s) 67, 109, 876
BfaI CTAG 2 cut(s) 384, 663
BfoI RGCGCY 2 cut(s) 228, 234
BfuAI ACCTGC 1 cut(s) 105
BfuI GTATCC 1 cut(s) 858
BisI GCNGC 6 cut(s) 178, 196, 330, 827, 864, 889
BlsI GCNGC 6 cut(s) 179, 197, 331, 828, 865, 890
BmcAI AGTACT 2 cut(s) 320, 839
BmiI GGNNCC 1 cut(s) 381
BoxI GACNNNNGTC 1 cut(s) 8
BpiI GAAGAC 2 cut(s) 499, 543
BpmI CTGGAG 1 cut(s) 798
Bpu10I CCTNAGC 1 cut(s) 534
BpuEI CTTGAG 1 cut(s) 353
BsaHI GRCGYC 2 cut(s) 60, 138
BsaJI CCNNGG 1 cut(s) 157
BsaWI WCCGGW 1 cut(s) 301
BsaXI ACNNNNNCTCC 6 cut(s) 47, 77, 194, 197, 224, 227
Bsc4I CCNNNNNNNGG 5 cut(s) 26, 56, 354, 761, 895
Bse118I RCCGGY 2 cut(s) 301, 347
Bse1I ACTGG 3 cut(s) 604, 731, 781
Bse3DI GCAATG 2 cut(s) 642, 858
BseDI CCNNGG 1 cut(s) 157
BseGI GGATG 2 cut(s) 751, 814
BseLI CCNNNNNNNGG 5 cut(s) 26, 56, 354, 761, 895
BseMI GCAATG 2 cut(s) 642, 858
BseMII CTCAG 3 cut(s) 506, 525, 669
BseNI ACTGG 3 cut(s) 604, 731, 781
BseRI GAGGAG 3 cut(s) 97, 202, 938
BseX3I CGGCCG 2 cut(s) 28, 886
BseXI GCAGC 4 cut(s) 182, 189, 341, 875
Bsh1236I CGCG 2 cut(s) 159, 953
Bsh1285I CGRYCG 2 cut(s) 31, 889
BshFI GGCC 2 cut(s) 30, 888
BshTI ACCGGT 1 cut(s) 301
BsiEI CGRYCG 2 cut(s) 31, 889
BsiHKAI GWGCWC 2 cut(s) 39, 156
BsiSI CCGG 5 cut(s) 27, 216, 302, 348, 434
BslFI GGGAC 2 cut(s) 433, 731
BslI CCNNNNNNNGG 5 cut(s) 26, 56, 354, 761, 895
BsmAI GTCTC 3 cut(s) 67, 109, 876
BsmBI CGTCTC 3 cut(s) 67, 109, 876
BsmFI GGGAC 2 cut(s) 433, 731
BsmI GAATGC 2 cut(s) 683, 746
BsnI GGCC 2 cut(s) 30, 888
Bsp1286I GDGCHC 2 cut(s) 39, 156
Bsp143I GATC 6 cut(s) 91, 342, 379, 511, 649, 954
BspANI GGCC 2 cut(s) 30, 888
BspCNI CTCAG 3 cut(s) 507, 526, 668
BspFNI CGCG 2 cut(s) 159, 953
BspHI TCATGA 1 cut(s) 940
BspLI GGNNCC 1 cut(s) 381
BspMI ACCTGC 1 cut(s) 105
BspPI GGATC 2 cut(s) 374, 387
BsrDI GCAATG 2 cut(s) 642, 858
BsrFI RCCGGY 2 cut(s) 301, 347
BsrI ACTGG 3 cut(s) 604, 731, 781
BssAI RCCGGY 2 cut(s) 301, 347
BssECI CCNNGG 1 cut(s) 157
BssMI GATC 6 cut(s) 91, 342, 379, 511, 649, 954
BssNI GRCGYC 2 cut(s) 60, 138
Bst4CI ACNGT 2 cut(s) 124, 244
BstACI GRCGYC 2 cut(s) 60, 138
BstC8I GCNNGC 2 cut(s) 229, 1020
BstDEI CTNAG 4 cut(s) 515, 534, 611, 655
BstDSI CCRYGG 1 cut(s) 157
BstF5I GGATG 2 cut(s) 751, 814
BstFNI CGCG 2 cut(s) 159, 953
BstH2I RGCGCY 2 cut(s) 228, 234
BstHHI GCGC 3 cut(s) 227, 233, 582
BstKTI GATC 6 cut(s) 94, 345, 382, 514, 652, 957
BstMAI GTCTC 3 cut(s) 67, 109, 876
BstMBI GATC 6 cut(s) 91, 342, 379, 511, 649, 954
BstMCI CGRYCG 2 cut(s) 31, 889
BstMWI GCNNNNNNNGC 1 cut(s) 885
BstNSI RCATGY 1 cut(s) 500
BstPAI GACNNNNGTC 1 cut(s) 8
BstUI CGCG 2 cut(s) 159, 953
BstV1I GCAGC 4 cut(s) 182, 189, 341, 875
BstV2I GAAGAC 2 cut(s) 499, 543
BstX2I RGATCY 1 cut(s) 379
BstYI RGATCY 1 cut(s) 379
BstZI CGGCCG 2 cut(s) 28, 886
BsuI GTATCC 1 cut(s) 858
BsuRI GGCC 2 cut(s) 30, 888
BtgI CCRYGG 1 cut(s) 157
BtsCI GGATG 2 cut(s) 751, 814
BtsI GCAGTG 1 cut(s) 973
BtsIMutI CAGTG 1 cut(s) 973
BveI ACCTGC 1 cut(s) 105
Cac8I GCNNGC 2 cut(s) 229, 1020
CaiI CAGNNNCTG 1 cut(s) 710
CciI TCATGA 1 cut(s) 940
CfoI GCGC 3 cut(s) 227, 233, 582
Cfr10I RCCGGY 2 cut(s) 301, 347
Cfr42I CCGCGG 1 cut(s) 160
CseI GACGC 4 cut(s) 49, 146, 305, 959
Csp6I GTAC 5 cut(s) 133, 319, 408, 765, 838
CspAI ACCGGT 1 cut(s) 301
CviAII CATG 2 cut(s) 497, 941
CviQI GTAC 5 cut(s) 133, 319, 408, 765, 838
DdeI CTNAG 4 cut(s) 515, 534, 611, 655
DpnI GATC 6 cut(s) 93, 344, 381, 513, 651, 956
DpnII GATC 6 cut(s) 91, 342, 379, 511, 649, 954
DrdI GACNNNNNNGTC 1 cut(s) 242
DseDI GACNNNNNNGTC 1 cut(s) 242
EaeI YGGCCR 2 cut(s) 28, 886
EagI CGGCCG 2 cut(s) 28, 886
EciI GGCGGA 2 cut(s) 6, 1005
Ecl136II GAGCTC 1 cut(s) 37
EclXI CGGCCG 2 cut(s) 28, 886
Eco24I GRGCYC 1 cut(s) 39
Eco52I CGGCCG 2 cut(s) 28, 886
Eco53kI GAGCTC 1 cut(s) 37
Eco57I CTGAAG 1 cut(s) 205
EcoICRI GAGCTC 1 cut(s) 37
EcoRI GAATTC 1 cut(s) 641
EcoT22I ATGCAT 1 cut(s) 685
EcoT38I GRGCYC 1 cut(s) 39
Esp3I CGTCTC 3 cut(s) 67, 109, 876
FaeI CATG 2 cut(s) 500, 944
FalI AAGNNNNNCTT 2 cut(s) 535, 567
FaqI GGGAC 2 cut(s) 433, 731
FatI CATG 2 cut(s) 496, 940
FauI CCCGC 1 cut(s) 58
FbaI TGATCA 1 cut(s) 342
FblI GTMKAC 1 cut(s) 1005
Fnu4HI GCNGC 6 cut(s) 178, 196, 330, 827, 864, 889
FokI GGATG 2 cut(s) 738, 821
FriOI GRGCYC 1 cut(s) 39
Fsp4HI GCNGC 6 cut(s) 178, 196, 330, 827, 864, 889
FspBI CTAG 2 cut(s) 384, 663
GlaI GCGC 3 cut(s) 226, 232, 581
GluI GCNGC 6 cut(s) 178, 196, 330, 827, 864, 889
GsuI CTGGAG 1 cut(s) 798
HaeII RGCGCY 2 cut(s) 228, 234
HaeIII GGCC 2 cut(s) 30, 888
HapII CCGG 5 cut(s) 27, 216, 302, 348, 434
HgaI GACGC 4 cut(s) 49, 146, 305, 959
HhaI GCGC 3 cut(s) 227, 233, 582
Hin1I GRCGYC 2 cut(s) 60, 138
Hin1II CATG 2 cut(s) 500, 944
Hin6I GCGC 3 cut(s) 225, 231, 580
HinP1I GCGC 3 cut(s) 225, 231, 580
HinfI GANTC 3 cut(s) 209, 252, 548
HpaII CCGG 5 cut(s) 27, 216, 302, 348, 434
HphI GGTGA 2 cut(s) 86, 337
Hpy166II GTNNAC 2 cut(s) 168, 1006
Hpy188I TCNGA 5 cut(s) 128, 464, 516, 658, 706
Hpy188III TCNNGA 2 cut(s) 188, 941
Hpy8I GTNNAC 2 cut(s) 168, 1006
Hpy99I CGWCG 4 cut(s) 59, 140, 209, 299
HpyAV CCTTC 3 cut(s) 537, 617, 708
HpyCH4III ACNGT 2 cut(s) 124, 244
HpyCH4IV ACGT 1 cut(s) 767
HpyCH4V TGCA 7 cut(s) 329, 482, 635, 683, 740, 746, 863
HpyF10VI GCNNNNNNNGC 1 cut(s) 885
HpyF3I CTNAG 4 cut(s) 515, 534, 611, 655
HpySE526I ACGT 1 cut(s) 767
Hsp92I GRCGYC 2 cut(s) 60, 138
Hsp92II CATG 2 cut(s) 500, 944
HspAI GCGC 3 cut(s) 225, 231, 580
Ksp22I TGATCA 1 cut(s) 342
KspI CCGCGG 1 cut(s) 160
Kzo9I GATC 6 cut(s) 91, 342, 379, 511, 649, 954
LmnI GCTCC 2 cut(s) 159, 436
Lsp1109I GCAGC 4 cut(s) 182, 189, 341, 875
MaeI CTAG 2 cut(s) 384, 663
MaeII ACGT 1 cut(s) 767
MaeIII GTNAC 2 cut(s) 525, 911
MalI GATC 6 cut(s) 93, 344, 381, 513, 651, 956
MboI GATC 6 cut(s) 91, 342, 379, 511, 649, 954
MboII GAAGA 3 cut(s) 287, 504, 543
MfeI CAATTG 1 cut(s) 741
MflI RGATCY 1 cut(s) 379
MhlI GDGCHC 2 cut(s) 39, 156
MluCI AATT 2 cut(s) 641, 741
MlyI GAGTC 2 cut(s) 203, 557
MmeI TCCRAC 5 cut(s) 66, 90, 105, 442, 875
Mph1103I ATGCAT 1 cut(s) 685
MslI CAYNNNNRTG 3 cut(s) 370, 501, 688
MspA1I CMGCKG 2 cut(s) 8, 159
MspI CCGG 5 cut(s) 27, 216, 302, 348, 434
MunI CAATTG 1 cut(s) 741
Mva1269I GAATGC 2 cut(s) 683, 746
MvnI CGCG 2 cut(s) 159, 953
MwoI GCNNNNNNNGC 1 cut(s) 885
NdeII GATC 6 cut(s) 91, 342, 379, 511, 649, 954
NlaIII CATG 2 cut(s) 500, 944
NlaIV GGNNCC 1 cut(s) 381
NmeAIII GCCGAG 1 cut(s) 56
NmuCI GTSAC 1 cut(s) 525
NsiI ATGCAT 1 cut(s) 685
NspI RCATGY 1 cut(s) 500
OliI CACNNNNGTG 1 cut(s) 370
PagI TCATGA 1 cut(s) 940
PaqCI CACCTGC 1 cut(s) 105
PciI ACATGT 1 cut(s) 496
PcsI WCGNNNNNNNCGW 1 cut(s) 180
PctI GAATGC 2 cut(s) 683, 746
PfeI GAWTC 1 cut(s) 252
PflFI GACNNNGTC 1 cut(s) 59
PinAI ACCGGT 1 cut(s) 301
PkrI GCNGC 6 cut(s) 179, 197, 331, 828, 865, 890
PleI GAGTC 2 cut(s) 203, 556
PpsI GAGTC 2 cut(s) 203, 556
PscI ACATGT 1 cut(s) 496
PshAI GACNNNNGTC 1 cut(s) 8
Psp124BI GAGCTC 1 cut(s) 39
PspN4I GGNNCC 1 cut(s) 381
PstNI CAGNNNCTG 1 cut(s) 710
PsuI RGATCY 1 cut(s) 379
PsyI GACNNNGTC 1 cut(s) 59
PvuII CAGCTG 1 cut(s) 8
RsaI GTAC 5 cut(s) 134, 320, 409, 766, 839
RsaNI GTAC 5 cut(s) 133, 319, 408, 765, 838
RseI CAYNNNNRTG 3 cut(s) 370, 501, 688
SacI GAGCTC 1 cut(s) 39
SacII CCGCGG 1 cut(s) 160
SatI GCNGC 6 cut(s) 178, 196, 330, 827, 864, 889
Sau3AI GATC 6 cut(s) 91, 342, 379, 511, 649, 954
ScaI AGTACT 2 cut(s) 320, 839
SchI GAGTC 2 cut(s) 203, 557
SduI GDGCHC 2 cut(s) 39, 156
SetI ASST 9 cut(s) 10, 39, 72, 99, 770, 784, 868, 940, 987
Sfr303I CCGCGG 1 cut(s) 160
SgrBI CCGCGG 1 cut(s) 160
SmiMI CAYNNNNRTG 3 cut(s) 370, 501, 688
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
Sse9I AATT 2 cut(s) 641, 741
SspMI CTAG 2 cut(s) 384, 663
SstI GAGCTC 1 cut(s) 39
TaaI ACNGT 2 cut(s) 124, 244
TaiI ACGT 1 cut(s) 770
TaqI TCGA 2 cut(s) 189, 571
TasI AATT 2 cut(s) 641, 741
TatI WGTACW 2 cut(s) 318, 837
TauI GCSGC 2 cut(s) 829, 891
TfiI GAWTC 1 cut(s) 252
TscAI CASTG 1 cut(s) 973
TseFI GTSAC 1 cut(s) 525
TseI GCWGC 4 cut(s) 177, 195, 329, 863
Tsp45I GTSAC 1 cut(s) 525
TspDTI ATGAA 1 cut(s) 543
TspGWI ACGGA 1 cut(s) 609
TspRI CASTG 1 cut(s) 973
Tth111I GACNNNGTC 1 cut(s) 59
XapI RAATTY 1 cut(s) 641
XceI RCATGY 1 cut(s) 500
XcmI CCANNNNNNNNNTGG 1 cut(s) 758
XmiI GTMKAC 1 cut(s) 1005
XspI CTAG 2 cut(s) 384, 663
ZrmI AGTACT 2 cut(s) 320, 839
Zsp2I ATGCAT 1 cut(s) 685
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.