Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0006719

Physical Location & Seq

Genomic Coordinates Reverse (-)

7134790 .. 7140482

Gene Structure 5693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g08200.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGTTGAAGCTCCTCCTCACCTTCGTAACCCTAACCCTCCCCTTTCTCGTCCACTCCTTCTCGCCGGACCACCCCACCGATCGCCGCGTCCTCGTCTTGCTCGATGACCTCGCCGTCAAATCCTCGCACTCGCTCTTCTTCAAGACTCTCCAGTCTCGCGGCTTCGACCTCGATTTCAAGCTCGCCGACGATCCCAAGATCGGGCTACAGCGTTACGGCCAGTACAACTATGACGCCTTGATCCTCTTCTCTCCGACTGTTGACCGTTTCGGAGGATCCATTGATCTGGCTGCTATACTGGATTTTGTGGATTCCGGTCATGATTTGATTATTGCAGCTGATACTAATGCATCTGATTTAATCCGACAAATCTCTGTTGAGTGCGGAGTTGATTTCGATGAGGACCCTTCAGCGATGGTTATAGATCACACGAGCTACGCAGTTTCAGACAATGAAGGAGATCATACACTGATTGCAAGTGATAATATCATTACGTCTGATGTAATTTTGGGAAGCAAGAAAATTGAGGCTCCTGTACTTTTCAAGGGCATTGGCCATACAATTAATCCTGAAAATAGCTTGGTTTTGAAAGTTCTCTCGGCTTCACCTTCAGCATATTCAGCTAATCCCAAAAGCAAGTTGTCTAGTCCTCCATCACTCACTGGATCTTCTATATCATTAGTCTCAGTTGTGCAGGCAAGAAACAATGCTCGGGTTTTGATCTCGGGTTCATTAAGTATGTTCAGTGATCGATTTTTTAGATCTAAGGTGCAGAAGGCTGGAAGACCAGATAAACATGAGAAATCAGCTAATGAGCAGTTTGTGACTGAACTTAGCAAGTGGGTTTTCCACGAAAGAGGTCATCTGAAGGCTGTGAATGTAAGACACCACAAAGTTGGGGAAACAGATGAACCTGCTATCTACAGGATCAACGATGATGTGGAATATTCGGTTGAGATTTATGAATGGCATGGAAAAAGTTGGGAACCATATGTTGCTGATGATGTCCAAGTGCAGTTTTATATGATGAGTCCCTACGTTCTGAAAACCTTATCAACTGATAAGAAGGGTCATTATTTTACAGCATTCAAGGTTCCAGATATTTACGGGGTTTTCCAATTCAAGGTGGAGTACAATAGGCTTGGTTATACAAGCGTAGCTCTATCAAAGCAGATTCCTGTTCGACCATTCAGACACAATGAATATGAAAGATTTATACCAGCAGCTTATCCTTATTATGGAGCAACATTTACTATGATGGCAGGTTTCTTCGTTTTCACAGCCGTCCACCTATACAACAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0005911 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0008150 GO:0008152 GO:0008250 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009505 GO:0009506 GO:0009653 GO:0009664 GO:0009826 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0031984 GO:0032502 GO:0032989 GO:0032991 GO:0034645 GO:0036211 GO:0040007 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0048589 GO:0048856 GO:0048869 GO:0055044 GO:0060560 GO:0070013 GO:0070085 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0098588 GO:0098796 GO:0098805 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 ko04141 map00510 map00513 map01100 map04141

Pfam Domains

Protein Families

DDOST_48kD

Protein Analysis

435

Amino Acids

48.8

Weight (kDa)

6.14

Isoelectric Point (pI)

32.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OST48_N	PF03345	29 - 282	2.3e-71	OST48, N-terminal domain
OST48_MD	PF23358	296 - 392	5.8e-30	OST48 middle domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66680
fragaria_vesca	FvH4_2g08200 FvH4_2g08200 FvH4_2g08200
malus_domestica	MD05G1070400.v1.1 MD10G1081300.v1.1 MD15G1269000.v1.1
prunus_persica	Prupe.7G148700_v2.0.a1 Prupe.7G148700_v2.0.a1 Prupe.7G148700_v2.0.a1 Prupe.7G148700_v2.0.a1 Prupe.7G148700_v2.0.a1 Prupe.8G102600_v2.0.a1
pyrus_communis	pycom05g06060 pycom10g06430 pycom15g23350
rosa_chinensis	RchiOBHm_Chr6g0262991
rosa_laevigata	RLG00000014386
rosa_multiflora	Rmu_sc0000596.1_g000071
rosa_roxburghii	Rroxscaffold_7G00204800
rosa_rugosa	Rorug06G0002700
rosa_samantha	Rh6AG121400 Rh6BG115000 Rh6CG113500 Rh6DG102800
rosa_wichuraiana	Rw6G010430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	113, 151
Acc36I	ACCTGC	2 cut(s)	922, 1253
AccII	CGCG	2 cut(s)	87, 159
AciI	CCGC	3 cut(s)	85, 159, 384
AclWI	GGATC	6 cut(s)	185, 235, 270, 283, 673, 935
AcoI	YGGCCR	2 cut(s)	217, 553
AcuI	CTGAAG	3 cut(s)	393, 594, 887
AcyI	GRCGYC	1 cut(s)	234
AfaI	GTAC	3 cut(s)	224, 537, 1133
AfiI	CCNNNNNNNGG	4 cut(s)	200, 201, 1123, 1238
AgsI	TTSAA	7 cut(s)	7, 142, 178, 544, 589, 1090, 1123
AluBI	AGCT	9 cut(s)	10, 181, 338, 435, 579, 623, 809, 1160, 1226
AluI	AGCT	9 cut(s)	10, 181, 338, 435, 579, 623, 809, 1160, 1226
Alw26I	GTCTC	2 cut(s)	159, 688
AlwI	GGATC	6 cut(s)	185, 235, 270, 283, 673, 935
Ama87I	CYCGRG	2 cut(s)	711, 724
AoxI	GGCC	2 cut(s)	217, 553
ApeKI	GCWGC	3 cut(s)	290, 335, 1223
AseI	ATTAAT	1 cut(s)	564
AspS9I	GGNCC	2 cut(s)	67, 403
AsuHPI	GGTGA	2 cut(s)	10, 597
AvaI	CYCGRG	2 cut(s)	711, 724
AvaII	GGWCC	2 cut(s)	67, 403
BalI	TGGCCA	1 cut(s)	555
BamHI	GGATCC	1 cut(s)	275
BauI	CACGAG	1 cut(s)	430
BbsI	GAAGAC	1 cut(s)	790
BbvI	GCAGC	3 cut(s)	277, 347, 1235
BccI	CCATC	3 cut(s)	409, 661, 1252
BceAI	ACGGC	3 cut(s)	98, 232, 1268
BcoDI	GTCTC	2 cut(s)	159, 688
BfaI	CTAG	1 cut(s)	645
BfmI	CTRYAG	2 cut(s)	206, 922
BfuAI	ACCTGC	2 cut(s)	922, 1253
BglII	AGATCT	1 cut(s)	761
BisI	GCNGC	5 cut(s)	85, 160, 291, 336, 1224
BlsI	GCNGC	5 cut(s)	86, 161, 292, 337, 1225
Bme18I	GGWCC	2 cut(s)	67, 403
BmeT110I	CYCGRG	2 cut(s)	711, 724
BmgT120I	GGNCC	2 cut(s)	67, 403
BmiI	GGNNCC	5 cut(s)	277, 405, 531, 987, 1095
BmsI	GCATC	1 cut(s)	359
BpiI	GAAGAC	1 cut(s)	790
BpmI	CTGGAG	1 cut(s)	134
Bsa29I	ATCGAT	1 cut(s)	751
BsaHI	GRCGYC	1 cut(s)	234
BsaWI	WCCGGW	1 cut(s)	314
Bsc4I	CCNNNNNNNGG	4 cut(s)	200, 201, 1123, 1238
Bse1I	ACTGG	4 cut(s)	151, 220, 303, 667
BseCI	ATCGAT	1 cut(s)	751
BseLI	CCNNNNNNNGG	4 cut(s)	200, 201, 1123, 1238
BseMII	CTCAG	1 cut(s)	699
BseNI	ACTGG	4 cut(s)	151, 220, 303, 667
BseRI	GAGGAG	1 cut(s)	5
BseXI	GCAGC	3 cut(s)	277, 347, 1235
BsgI	GTGCAG	3 cut(s)	713, 791, 1034
Bsh1236I	CGCG	2 cut(s)	87, 159
Bsh1285I	CGRYCG	1 cut(s)	82
BshFI	GGCC	2 cut(s)	219, 555
BshVI	ATCGAT	1 cut(s)	751
BsiEI	CGRYCG	1 cut(s)	82
BsiHKCI	CYCGRG	2 cut(s)	711, 724
BsiSI	CCGG	2 cut(s)	65, 315
BslFI	GGGAC	1 cut(s)	1017
BslI	CCNNNNNNNGG	4 cut(s)	200, 201, 1123, 1238
BsmAI	GTCTC	2 cut(s)	159, 688
BsmFI	GGGAC	1 cut(s)	1017
BsmI	GAATGC	1 cut(s)	1085
BsnI	GGCC	2 cut(s)	219, 555
BsoBI	CYCGRG	2 cut(s)	711, 724
BspACI	CCGC	3 cut(s)	85, 159, 384
BspANI	GGCC	2 cut(s)	219, 555
BspCNI	CTCAG	1 cut(s)	698
BspDI	ATCGAT	1 cut(s)	751
BspFNI	CGCG	2 cut(s)	87, 159
BspHI	TCATGA	1 cut(s)	319
BspLI	GGNNCC	5 cut(s)	277, 405, 531, 987, 1095
BspMI	ACCTGC	2 cut(s)	922, 1253
BspPI	GGATC	6 cut(s)	185, 235, 270, 283, 673, 935
BspQI	GCTCTTC	1 cut(s)	140
BsrI	ACTGG	4 cut(s)	151, 220, 303, 667
BssNI	GRCGYC	1 cut(s)	234
BssSI	CACGAG	1 cut(s)	430
Bst2BI	CACGAG	1 cut(s)	430
Bst4CI	ACNGT	2 cut(s)	259, 266
Bst6I	CTCTTC	2 cut(s)	140, 251
BstACI	GRCGYC	1 cut(s)	234
BstC8I	GCNNGC	2 cut(s)	183, 696
BstDEI	CTNAG	3 cut(s)	685, 765, 833
BstFNI	CGCG	2 cut(s)	87, 159
BstMAI	GTCTC	2 cut(s)	159, 688
BstMCI	CGRYCG	1 cut(s)	82
BstMWI	GCNNNNNNNGC	1 cut(s)	620
BstSFI	CTRYAG	2 cut(s)	206, 922
BstUI	CGCG	2 cut(s)	87, 159
BstV1I	GCAGC	3 cut(s)	277, 347, 1235
BstV2I	GAAGAC	1 cut(s)	790
BstX2I	RGATCY	3 cut(s)	275, 665, 761
BstXI	CCANNNNNNTGG	2 cut(s)	286, 896
BstYI	RGATCY	3 cut(s)	275, 665, 761
Bsu15I	ATCGAT	1 cut(s)	751
BsuRI	GGCC	2 cut(s)	219, 555
BsuTUI	ATCGAT	1 cut(s)	751
BtgZI	GCGATG	1 cut(s)	428
BtsIMutI	CAGTG	3 cut(s)	467, 660, 751
BveI	ACCTGC	2 cut(s)	922, 1253
Cac8I	GCNNGC	2 cut(s)	183, 696
CciI	TCATGA	1 cut(s)	319
Cfr13I	GGNCC	2 cut(s)	67, 403
ClaI	ATCGAT	1 cut(s)	751
CseI	GACGC	2 cut(s)	76, 242
Csp6I	GTAC	3 cut(s)	223, 536, 1132
CviAII	CATG	3 cut(s)	320, 797, 971
CviQI	GTAC	3 cut(s)	223, 536, 1132
DdeI	CTNAG	3 cut(s)	685, 765, 833
DrdI	GACNNNNNNGTC	2 cut(s)	113, 151
DseDI	GACNNNNNNGTC	2 cut(s)	113, 151
EaeI	YGGCCR	2 cut(s)	217, 553
Eam1104I	CTCTTC	2 cut(s)	140, 251
EarI	CTCTTC	2 cut(s)	140, 251
Eco47I	GGWCC	2 cut(s)	67, 403
Eco57I	CTGAAG	3 cut(s)	393, 594, 887
Eco88I	CYCGRG	2 cut(s)	711, 724
EcoO109I	RGGNCCY	1 cut(s)	403
EcoT22I	ATGCAT	1 cut(s)	352
FaeI	CATG	3 cut(s)	323, 800, 974
FaqI	GGGAC	1 cut(s)	1017
FatI	CATG	3 cut(s)	319, 796, 970
FauNDI	CATATG	1 cut(s)	991
Fnu4HI	GCNGC	5 cut(s)	85, 160, 291, 336, 1224
Fsp4HI	GCNGC	5 cut(s)	85, 160, 291, 336, 1224
FspBI	CTAG	1 cut(s)	645
GluI	GCNGC	5 cut(s)	85, 160, 291, 336, 1224
GsuI	CTGGAG	1 cut(s)	134
HaeIII	GGCC	2 cut(s)	219, 555
HapII	CCGG	2 cut(s)	65, 315
HgaI	GACGC	2 cut(s)	76, 242
Hin1I	GRCGYC	1 cut(s)	234
Hin1II	CATG	3 cut(s)	323, 800, 974
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HinfI	GANTC	4 cut(s)	145, 311, 1030, 1174
HpaII	CCGG	2 cut(s)	65, 315
HphI	GGTGA	2 cut(s)	10, 597
Hpy166II	GTNNAC	3 cut(s)	52, 262, 1288
Hpy188I	TCNGA	9 cut(s)	255, 272, 355, 365, 448, 499, 867, 1044, 1193
Hpy188III	TCNNGA	4 cut(s)	142, 320, 569, 1097
Hpy8I	GTNNAC	3 cut(s)	52, 262, 1288
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	8 cut(s)	31, 67, 417, 449, 618, 769, 862, 1060
HpyCH4III	ACNGT	2 cut(s)	259, 266
HpyCH4IV	ACGT	2 cut(s)	494, 1038
HpyCH4V	TGCA	6 cut(s)	335, 350, 476, 694, 772, 1015
HpyF10VI	GCNNNNNNNGC	1 cut(s)	620
HpyF3I	CTNAG	3 cut(s)	685, 765, 833
HpySE526I	ACGT	2 cut(s)	494, 1038
Hsp92I	GRCGYC	1 cut(s)	234
Hsp92II	CATG	3 cut(s)	323, 800, 974
LguI	GCTCTTC	1 cut(s)	140
LmnI	GCTCC	3 cut(s)	15, 535, 1241
Lsp1109I	GCAGC	3 cut(s)	277, 347, 1235
LweI	GCATC	1 cut(s)	359
MaeI	CTAG	1 cut(s)	645
MaeII	ACGT	2 cut(s)	494, 1038
MaeIII	GTNAC	3 cut(s)	25, 212, 823
MboII	GAAGA	6 cut(s)	127, 130, 238, 660, 795, 1261
MflI	RGATCY	3 cut(s)	275, 665, 761
MlsI	TGGCCA	1 cut(s)	555
MluCI	AATT	4 cut(s)	504, 522, 561, 1118
MluNI	TGGCCA	1 cut(s)	555
MlyI	GAGTC	2 cut(s)	139, 1039
MmeI	TCCRAC	2 cut(s)	278, 388
Mox20I	TGGCCA	1 cut(s)	555
Mph1103I	ATGCAT	1 cut(s)	352
MscI	TGGCCA	1 cut(s)	555
MseI	TTAA	3 cut(s)	359, 564, 734
Msp20I	TGGCCA	1 cut(s)	555
MspA1I	CMGCKG	1 cut(s)	338
MspI	CCGG	2 cut(s)	65, 315
Mva1269I	GAATGC	1 cut(s)	1085
MvnI	CGCG	2 cut(s)	87, 159
MwoI	GCNNNNNNNGC	1 cut(s)	620
NdeI	CATATG	1 cut(s)	991
NlaIII	CATG	3 cut(s)	323, 800, 974
NlaIV	GGNNCC	5 cut(s)	277, 405, 531, 987, 1095
NmeAIII	GCCGAG	1 cut(s)	578
NmuCI	GTSAC	1 cut(s)	823
NsiI	ATGCAT	1 cut(s)	352
PagI	TCATGA	1 cut(s)	319
PciSI	GCTCTTC	1 cut(s)	140
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PctI	GAATGC	1 cut(s)	1085
PfeI	GAWTC	2 cut(s)	311, 1174
PkrI	GCNGC	5 cut(s)	86, 161, 292, 337, 1225
Ple19I	CGATCG	1 cut(s)	82
PleI	GAGTC	2 cut(s)	139, 1038
PpsI	GAGTC	2 cut(s)	139, 1038
PpuMI	RGGWCCY	1 cut(s)	403
PshBI	ATTAAT	1 cut(s)	564
Psp5II	RGGWCCY	1 cut(s)	403
PspN4I	GGNNCC	5 cut(s)	277, 405, 531, 987, 1095
PspPI	GGNCC	2 cut(s)	67, 403
PspPPI	RGGWCCY	1 cut(s)	403
PsuI	RGATCY	3 cut(s)	275, 665, 761
PvuI	CGATCG	1 cut(s)	82
PvuII	CAGCTG	1 cut(s)	338
RsaI	GTAC	3 cut(s)	224, 537, 1133
RsaNI	GTAC	3 cut(s)	223, 536, 1132
SapI	GCTCTTC	1 cut(s)	140
SaqAI	TTAA	3 cut(s)	359, 564, 734
SatI	GCNGC	5 cut(s)	85, 160, 291, 336, 1224
Sau96I	GGNCC	2 cut(s)	67, 403
SchI	GAGTC	2 cut(s)	139, 1039
SfaNI	GCATC	1 cut(s)	359
SfcI	CTRYAG	2 cut(s)	206, 922
SinI	GGWCC	2 cut(s)	67, 403
Sse9I	AATT	4 cut(s)	504, 522, 561, 1118
SsiI	CCGC	3 cut(s)	85, 159, 384
SspI	AATATT	1 cut(s)	947
SspMI	CTAG	1 cut(s)	645
TaaI	ACNGT	2 cut(s)	259, 266
TaiI	ACGT	2 cut(s)	497, 1041
TaqI	TCGA	6 cut(s)	102, 165, 171, 396, 751, 1183
TasI	AATT	4 cut(s)	504, 522, 561, 1118
TatI	WGTACW	3 cut(s)	222, 535, 1131
TauI	GCSGC	2 cut(s)	87, 162
TfiI	GAWTC	2 cut(s)	311, 1174
Tru1I	TTAA	3 cut(s)	359, 564, 734
Tru9I	TTAA	3 cut(s)	359, 564, 734
TscAI	CASTG	3 cut(s)	474, 667, 751
TseFI	GTSAC	1 cut(s)	823
TseI	GCWGC	3 cut(s)	290, 335, 1223
Tsp45I	GTSAC	1 cut(s)	823
TspDTI	ATGAA	6 cut(s)	468, 720, 924, 978, 1215, 1221
TspRI	CASTG	3 cut(s)	474, 667, 751
VpaK11BI	GGWCC	2 cut(s)	67, 403
VspI	ATTAAT	1 cut(s)	564
XspI	CTAG	1 cut(s)	645
Zsp2I	ATGCAT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.