Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006719

Physical Location & Seq

Genomic Coordinates Reverse (-)

17789286 .. 17795528

Gene Structure 6243 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23585

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ATGTTGAAGCTCCTCCTCGCCTTCCTAACCCTAACTCTCCCATTCCTCGCCCACTCCTTCTCGCCGGACCACCCCACCGACCGCCGGGTCCTCGTCTTGCTCGACGACCTCGCCGTCAAATCCTCGCACTCGCTCTTCTTCAAGACCCTCCAATCTCGAGGCTTCGACCTCGATTTCAAGCTCGCCGACGACCCCAAGATCGGGTTGCAGAGATACGGCCAGTACACCTATGACGCCTTGATCCTCTTTTCTCCCACTGTTGACCGTTTTGGAGGATCCATTGATCTCGCTGCTATACTGGATTTTGTGGATACCGGTCATGATTTGATTATTGCTGCTGATACTAATGCATCTGATTTAATCCGACAAATCTCTGTTGAGTGCGGAGTTGATTTCGATGAGGACCCTTCAGCTATGGTTATAGATCACACGAGCTATGCAGTATCAGACAGTGAGGGGGATCATACACTGATTGCAAGCGATGATTTCATTTCGTCTGATGTAATTTTGGGAAGCAAGAAAATTGAGGCAAGCTCTATTCTTGACAACGCTCCTGTACTTTTCAAGGGGATTGGCCATACAATAAATTCAGAAAATAGCTTGGTTTTGAAAGTTCTCTCAGCTTCACCTTCAGCATATTCAGCTAATCCCAACAGCAAGCTGTCTAGTCCTCCATCGCTCACTGGATCTTCTATATCATTAGTATCAGTTGTGCAGGCAAGAAACAATGCTCGGGTTTTGATCTCCGGGTCATTAAGTATGTTCAGTGATCGATTTTTTAGATCTAAGGTGCAGAAGGCTGGGAGCCCAGATAAACATGAGAAATCAGCTAATGAGCAGTTTCTGACTGAACTTAGCAAGTGGGTTTTCCACGAAAGAGGTCATCTGAAGGCTGTGAATGTAAGACACCACAAAGTTGGGGAAGCAGATGAACCAGCTATCTACAGGATCAACGATGATGTGGAATATTCGATCGAGATTTATGAATGGCATGGAAAAAGTTGGGAACCATATGTTGCTGATGATGTCCAAGTGCAGTTTTATATGATGAGCCCTTATGTTCTGAAAACCTTATCAACTGATAAGAAGGGTAATTATTTTACAGCATTCAAGGTCCCAGATGTTTATGGGGTTTTCCAATTCAAGGTTGAGTATCATAGGCTTGGGTATACAAGCGTAGCTCTATCAAAGCAGATTCCTGTTCGACCATTCAGACACAACGAATATGAAAGATTTATACCAGCAGCTTATCCTTATTATGGAGCAGCATTTACTATGATGACAGGTTTCTTCGTTTTCACAGTTGTCCACCTATACAACAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0005911 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0008150 GO:0008152 GO:0008250 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009505 GO:0009506 GO:0009653 GO:0009664 GO:0009826 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0031984 GO:0032502 GO:0032989 GO:0032991 GO:0034645 GO:0036211 GO:0040007 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0048589 GO:0048856 GO:0048869 GO:0055044 GO:0060560 GO:0070013 GO:0070085 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0098588 GO:0098796 GO:0098805 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 ko04141 map00510 map00513 map01100 map04141

Pfam Domains

Protein Families

DDOST_48kD

Protein Analysis

441

Amino Acids

49.37

Weight (kDa)

5.8

Isoelectric Point (pI)

31.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OST48_N	PF03345	29 - 289	4.3e-69	OST48, N-terminal domain
OST48_MD	PF23358	303 - 440	3.8e-49	OST48 middle domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66680
fragaria_vesca	FvH4_2g08200 FvH4_2g08200 FvH4_2g08200
malus_domestica	MD05G1070400.v1.1 MD10G1081300.v1.1 MD15G1269000.v1.1
prunus_persica	Prupe.7G148700_v2.0.a1 Prupe.7G148700_v2.0.a1 Prupe.7G148700_v2.0.a1 Prupe.7G148700_v2.0.a1 Prupe.7G148700_v2.0.a1 Prupe.8G102600_v2.0.a1
pyrus_communis	pycom05g06060 pycom10g06430 pycom15g23350
rosa_chinensis	RchiOBHm_Chr6g0262991
rosa_laevigata	RLG00000014386
rosa_multiflora	Rmu_sc0000596.1_g000071
rosa_roxburghii	Rroxscaffold_7G00204800
rosa_rugosa	Rorug06G0002700
rosa_samantha	Rh6AG121400 Rh6BG115000 Rh6CG113500 Rh6DG102800
rosa_wichuraiana	Rw6G010430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	86, 113
AccI	GTMKAC	1 cut(s)	1169
AciI	CCGC	2 cut(s)	82, 384
AclWI	GGATC	6 cut(s)	235, 270, 283, 468, 694, 956
AcoI	YGGCCR	2 cut(s)	217, 574
AcsI	RAATTY	1 cut(s)	586
AcuI	CTGAAG	3 cut(s)	393, 615, 908
AcyI	GRCGYC	1 cut(s)	234
AfaI	GTAC	2 cut(s)	224, 558
AfiI	CCNNNNNNNGG	5 cut(s)	84, 200, 201, 1144, 1259
AgeI	ACCGGT	1 cut(s)	314
AgsI	TTSAA	7 cut(s)	7, 142, 178, 565, 610, 1111, 1144
AlwI	GGATC	6 cut(s)	235, 270, 283, 468, 694, 956
AlwNI	CAGNNNCTG	1 cut(s)	844
Ama87I	CYCGRG	2 cut(s)	156, 732
AoxI	GGCC	2 cut(s)	217, 574
ApeKI	GCWGC	4 cut(s)	290, 335, 1244, 1265
ApoI	RAATTY	1 cut(s)	586
AsiGI	ACCGGT	1 cut(s)	314
AspS9I	GGNCC	4 cut(s)	67, 88, 403, 1114
AsuC2I	CCSGG	2 cut(s)	86, 748
AsuHPI	GGTGA	1 cut(s)	618
AvaI	CYCGRG	2 cut(s)	156, 732
AvaII	GGWCC	4 cut(s)	67, 88, 403, 1114
BalI	TGGCCA	1 cut(s)	576
BamHI	GGATCC	1 cut(s)	275
BanII	GRGCYC	2 cut(s)	809, 1055
BauI	CACGAG	1 cut(s)	430
BbvI	GCAGC	4 cut(s)	277, 322, 1256, 1277
BccI	CCATC	1 cut(s)	682
BceAI	ACGGC	2 cut(s)	98, 232
BciVI	GTATCC	1 cut(s)	304
BcnI	CCSGG	2 cut(s)	86, 748
BfaI	CTAG	1 cut(s)	666
BfmI	CTRYAG	1 cut(s)	943
BfuI	GTATCC	1 cut(s)	304
BglII	AGATCT	1 cut(s)	782
BisI	GCNGC	4 cut(s)	291, 336, 1245, 1266
BlsI	GCNGC	4 cut(s)	292, 337, 1246, 1267
Bme1390I	CCNGG	2 cut(s)	86, 748
Bme18I	GGWCC	4 cut(s)	67, 88, 403, 1114
BmeT110I	CYCGRG	2 cut(s)	156, 732
BmgT120I	GGNCC	4 cut(s)	67, 88, 403, 1114
BmiI	GGNNCC	6 cut(s)	89, 277, 405, 806, 1008, 1116
BmrFI	CCNGG	2 cut(s)	86, 748
BmsI	GCATC	1 cut(s)	359
BplI	GAGNNNNNCTC	2 cut(s)	518, 550
BpuMI	CCSGG	2 cut(s)	86, 748
Bsa29I	ATCGAT	1 cut(s)	772
BsaHI	GRCGYC	1 cut(s)	234
BsaWI	WCCGGW	1 cut(s)	314
Bsc4I	CCNNNNNNNGG	5 cut(s)	84, 200, 201, 1144, 1259
Bse118I	RCCGGY	1 cut(s)	314
Bse1I	ACTGG	3 cut(s)	220, 303, 688
BseCI	ATCGAT	1 cut(s)	772
BseLI	CCNNNNNNNGG	5 cut(s)	84, 200, 201, 1144, 1259
BseMII	CTCAG	1 cut(s)	633
BseNI	ACTGG	3 cut(s)	220, 303, 688
BseRI	GAGGAG	1 cut(s)	5
BseXI	GCAGC	4 cut(s)	277, 322, 1256, 1277
BseYI	CCCAGC	1 cut(s)	800
BsgI	GTGCAG	3 cut(s)	734, 812, 1055
Bsh1285I	CGRYCG	2 cut(s)	82, 975
BshFI	GGCC	2 cut(s)	219, 576
BshTI	ACCGGT	1 cut(s)	314
BshVI	ATCGAT	1 cut(s)	772
BsiEI	CGRYCG	2 cut(s)	82, 975
BsiHKCI	CYCGRG	2 cut(s)	156, 732
BsiSI	CCGG	4 cut(s)	65, 85, 315, 747
BslFI	GGGAC	1 cut(s)	1100
BslI	CCNNNNNNNGG	5 cut(s)	84, 200, 201, 1144, 1259
BsmFI	GGGAC	1 cut(s)	1100
BsmI	GAATGC	1 cut(s)	1106
BsnI	GGCC	2 cut(s)	219, 576
BsoBI	CYCGRG	2 cut(s)	156, 732
Bsp1286I	GDGCHC	2 cut(s)	809, 1055
BspACI	CCGC	2 cut(s)	82, 384
BspANI	GGCC	2 cut(s)	219, 576
BspCNI	CTCAG	1 cut(s)	632
BspDI	ATCGAT	1 cut(s)	772
BspHI	TCATGA	1 cut(s)	319
BspLI	GGNNCC	6 cut(s)	89, 277, 405, 806, 1008, 1116
BspPI	GGATC	6 cut(s)	235, 270, 283, 468, 694, 956
BspQI	GCTCTTC	1 cut(s)	140
BsrFI	RCCGGY	1 cut(s)	314
BsrI	ACTGG	3 cut(s)	220, 303, 688
BssAI	RCCGGY	1 cut(s)	314
BssNAI	GTATAC	1 cut(s)	1170
BssNI	GRCGYC	1 cut(s)	234
BssSI	CACGAG	1 cut(s)	430
Bst1107I	GTATAC	1 cut(s)	1170
Bst2BI	CACGAG	1 cut(s)	430
Bst4CI	ACNGT	4 cut(s)	259, 266, 452, 1303
Bst6I	CTCTTC	1 cut(s)	140
BstACI	GRCGYC	1 cut(s)	234
BstC8I	GCNNGC	5 cut(s)	183, 478, 532, 659, 717
BstDEI	CTNAG	3 cut(s)	619, 786, 854
BstMCI	CGRYCG	2 cut(s)	82, 975
BstMWI	GCNNNNNNNGC	1 cut(s)	641
BstSCI	CCNGG	2 cut(s)	84, 746
BstSFI	CTRYAG	1 cut(s)	943
BstV1I	GCAGC	4 cut(s)	277, 322, 1256, 1277
BstX2I	RGATCY	3 cut(s)	275, 686, 782
BstXI	CCANNNNNNTGG	1 cut(s)	917
BstYI	RGATCY	3 cut(s)	275, 686, 782
BstZ17I	GTATAC	1 cut(s)	1170
Bsu15I	ATCGAT	1 cut(s)	772
BsuI	GTATCC	1 cut(s)	304
BsuRI	GGCC	2 cut(s)	219, 576
BsuTUI	ATCGAT	1 cut(s)	772
BtgZI	GCGATG	2 cut(s)	495, 660
BtsIMutI	CAGTG	5 cut(s)	255, 457, 467, 681, 772
Cac8I	GCNNGC	5 cut(s)	183, 478, 532, 659, 717
CaiI	CAGNNNCTG	1 cut(s)	844
CciI	TCATGA	1 cut(s)	319
Cfr10I	RCCGGY	1 cut(s)	314
Cfr13I	GGNCC	4 cut(s)	67, 88, 403, 1114
ClaI	ATCGAT	1 cut(s)	772
CseI	GACGC	1 cut(s)	242
Csp6I	GTAC	2 cut(s)	223, 557
CspAI	ACCGGT	1 cut(s)	314
CviAII	CATG	3 cut(s)	320, 818, 992
CviQI	GTAC	2 cut(s)	223, 557
DdeI	CTNAG	3 cut(s)	619, 786, 854
DrdI	GACNNNNNNGTC	2 cut(s)	86, 113
DseDI	GACNNNNNNGTC	2 cut(s)	86, 113
EaeI	YGGCCR	2 cut(s)	217, 574
Eam1104I	CTCTTC	1 cut(s)	140
EarI	CTCTTC	1 cut(s)	140
Eco24I	GRGCYC	2 cut(s)	809, 1055
Eco47I	GGWCC	4 cut(s)	67, 88, 403, 1114
Eco57I	CTGAAG	3 cut(s)	393, 615, 908
Eco88I	CYCGRG	2 cut(s)	156, 732
EcoO109I	RGGNCCY	3 cut(s)	88, 403, 1114
EcoT22I	ATGCAT	1 cut(s)	352
EcoT38I	GRGCYC	2 cut(s)	809, 1055
FaeI	CATG	3 cut(s)	323, 821, 995
FaqI	GGGAC	1 cut(s)	1100
FatI	CATG	3 cut(s)	319, 817, 991
FauNDI	CATATG	1 cut(s)	1012
FblI	GTMKAC	1 cut(s)	1169
Fnu4HI	GCNGC	4 cut(s)	291, 336, 1245, 1266
FriOI	GRGCYC	2 cut(s)	809, 1055
Fsp4HI	GCNGC	4 cut(s)	291, 336, 1245, 1266
FspBI	CTAG	1 cut(s)	666
GluI	GCNGC	4 cut(s)	291, 336, 1245, 1266
GsaI	CCCAGC	1 cut(s)	804
HaeIII	GGCC	2 cut(s)	219, 576
HapII	CCGG	4 cut(s)	65, 85, 315, 747
HgaI	GACGC	1 cut(s)	242
Hin1I	GRCGYC	1 cut(s)	234
Hin1II	CATG	3 cut(s)	323, 821, 995
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HinfI	GANTC	1 cut(s)	1195
HpaII	CCGG	4 cut(s)	65, 85, 315, 747
HphI	GGTGA	1 cut(s)	618
Hpy166II	GTNNAC	4 cut(s)	225, 262, 1170, 1309
Hpy188I	TCNGA	9 cut(s)	355, 365, 448, 499, 592, 846, 888, 1065, 1214
Hpy188III	TCNNGA	5 cut(s)	142, 156, 320, 542, 976
Hpy8I	GTNNAC	4 cut(s)	225, 262, 1170, 1309
Hpy99I	CGWCG	2 cut(s)	107, 191
HpyAV	CCTTC	7 cut(s)	31, 67, 417, 639, 790, 883, 1081
HpyCH4III	ACNGT	4 cut(s)	259, 266, 452, 1303
HpyCH4V	TGCA	7 cut(s)	208, 350, 440, 476, 715, 793, 1036
HpyF10VI	GCNNNNNNNGC	1 cut(s)	641
HpyF3I	CTNAG	3 cut(s)	619, 786, 854
Hsp92I	GRCGYC	1 cut(s)	234
Hsp92II	CATG	3 cut(s)	323, 821, 995
LguI	GCTCTTC	1 cut(s)	140
LmnI	GCTCC	4 cut(s)	15, 556, 804, 1262
Lsp1109I	GCAGC	4 cut(s)	277, 322, 1256, 1277
LweI	GCATC	1 cut(s)	359
MaeI	CTAG	1 cut(s)	666
MboII	GAAGA	4 cut(s)	127, 130, 681, 1282
MflI	RGATCY	3 cut(s)	275, 686, 782
MhlI	GDGCHC	2 cut(s)	809, 1055
MlsI	TGGCCA	1 cut(s)	576
MluCI	AATT	5 cut(s)	504, 522, 586, 1093, 1139
MluNI	TGGCCA	1 cut(s)	576
MmeI	TCCRAC	1 cut(s)	388
Mox20I	TGGCCA	1 cut(s)	576
Mph1103I	ATGCAT	1 cut(s)	352
MscI	TGGCCA	1 cut(s)	576
MseI	TTAA	2 cut(s)	359, 755
Msp20I	TGGCCA	1 cut(s)	576
MspI	CCGG	4 cut(s)	65, 85, 315, 747
MspR9I	CCNGG	2 cut(s)	86, 748
Mva1269I	GAATGC	1 cut(s)	1106
MwoI	GCNNNNNNNGC	1 cut(s)	641
NciI	CCSGG	2 cut(s)	86, 748
NdeI	CATATG	1 cut(s)	1012
NlaIII	CATG	3 cut(s)	323, 821, 995
NlaIV	GGNNCC	6 cut(s)	89, 277, 405, 806, 1008, 1116
NsiI	ATGCAT	1 cut(s)	352
PaeR7I	CTCGAG	1 cut(s)	156
PagI	TCATGA	1 cut(s)	319
PciSI	GCTCTTC	1 cut(s)	140
PcsI	WCGNNNNNNNCGW	2 cut(s)	99, 111
PctI	GAATGC	1 cut(s)	1106
PfeI	GAWTC	1 cut(s)	1195
PinAI	ACCGGT	1 cut(s)	314
PkrI	GCNGC	4 cut(s)	292, 337, 1246, 1267
Ple19I	CGATCG	1 cut(s)	975
PpuMI	RGGWCCY	3 cut(s)	88, 403, 1114
Psp5II	RGGWCCY	3 cut(s)	88, 403, 1114
PspFI	CCCAGC	1 cut(s)	800
PspN4I	GGNNCC	6 cut(s)	89, 277, 405, 806, 1008, 1116
PspPI	GGNCC	4 cut(s)	67, 88, 403, 1114
PspPPI	RGGWCCY	3 cut(s)	88, 403, 1114
PstNI	CAGNNNCTG	1 cut(s)	844
PsuI	RGATCY	3 cut(s)	275, 686, 782
PvuI	CGATCG	1 cut(s)	975
RsaI	GTAC	2 cut(s)	224, 558
RsaNI	GTAC	2 cut(s)	223, 557
SapI	GCTCTTC	1 cut(s)	140
SaqAI	TTAA	2 cut(s)	359, 755
SatI	GCNGC	4 cut(s)	291, 336, 1245, 1266
Sau96I	GGNCC	4 cut(s)	67, 88, 403, 1114
ScrFI	CCNGG	2 cut(s)	86, 748
SduI	GDGCHC	2 cut(s)	809, 1055
SfaNI	GCATC	1 cut(s)	359
SfcI	CTRYAG	1 cut(s)	943
Sfr274I	CTCGAG	1 cut(s)	156
SinI	GGWCC	4 cut(s)	67, 88, 403, 1114
SlaI	CTCGAG	1 cut(s)	156
SmlI	CTYRAG	1 cut(s)	156
SmoI	CTYRAG	1 cut(s)	156
Sse9I	AATT	5 cut(s)	504, 522, 586, 1093, 1139
SsiI	CCGC	2 cut(s)	82, 384
SspI	AATATT	1 cut(s)	968
SspMI	CTAG	1 cut(s)	666
StyD4I	CCNGG	2 cut(s)	84, 746
TaaI	ACNGT	4 cut(s)	259, 266, 452, 1303
TaqI	TCGA	9 cut(s)	102, 157, 165, 171, 396, 772, 971, 975, 1204
TasI	AATT	5 cut(s)	504, 522, 586, 1093, 1139
TatI	WGTACW	2 cut(s)	222, 556
TfiI	GAWTC	1 cut(s)	1195
Tru1I	TTAA	2 cut(s)	359, 755
Tru9I	TTAA	2 cut(s)	359, 755
TscAI	CASTG	5 cut(s)	262, 457, 474, 688, 772
TseI	GCWGC	4 cut(s)	290, 335, 1244, 1265
TspDTI	ATGAA	4 cut(s)	478, 945, 999, 1242
TspRI	CASTG	5 cut(s)	262, 457, 474, 688, 772
VpaK11BI	GGWCC	4 cut(s)	67, 88, 403, 1114
XapI	RAATTY	1 cut(s)	586
XhoI	CTCGAG	1 cut(s)	156
XmiI	GTMKAC	1 cut(s)	1169
XspI	CTAG	1 cut(s)	666
Zsp2I	ATGCAT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.