Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0006719

Physical Location & Seq

Genomic Coordinates Reverse (-)

13030726 .. 13036044

Gene Structure 5319 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG113500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGTTGAAGCTCCTCCTCGCCTTCCTAACCCTAACTCTCCCATTCCTCGCCCACTCCTTCTCGCCGGACCACCCCACCGATCGCCGAGTCCTCGTCTTGCTCGACGACCTCGCCATCAAATCCTCGCACTCGCTCTTCTTCAAGACCCTCCAATCTCGAGGCTTCGACCTCGATTTCAAGCTCGCCGACGACCCCAAGATCGGGTTACAGAGATACGGCCAGTACACCTATGACGCCTTGATCCTCTTTTCTCCCACTGTTGACCGTTTTGGAGGATCCATTGATCTGGCTGCTATACTGGATTTTGTGGATACCGGTCATGATTTGATTATTGCTGCTGATACTAATGCATCTGATTTAATCCGACAAATCTCTGTCGAGTGCGGAGTTGATTTTGATGAGGACCCTTCAGCTATGGTTATAGATCACACGAGCTATGCAGTATCAGACAGTGAGGGAGATCATACACTGATTGCAAGCGATGATTTCATTTCGTCTGATGTAATTTTGGGAAGCAAGAAAATTGAGGCTCCTGTACTTTTCAAGGGGATTGGCCATACAATAAATTCAGAAAATAGCTTGGTTTTGAAAGTTCTCTCAGCTTCACCTTCAGCATATTCAGCTAATCCCAACAGCAAGCTGTCTAGTCCTCCATCGCTCACTGGATCTTCTATATCATTAGTATCAGTTGTGCAGGCAAGAAACAATGCTCGGGTTTTGATCTCTGGGTCATTAAGTATGTTCAGTGATCGATTTTTTAGATCTAAGGTGCAGAAGGCTGGGAGCCCAGATAAACATGAGAAATCAGCTAATGAGCAGTTTCTGACTGAACTTAGCAAGTGGGTTTTCCACGAAAGAGGTCATCTGAAGGCTGTGAATGTAAGACACCACAAAGTTGGGGAAGCAGATGAACCAGCTATCTACAGGATCAACGATGATGTGGAATATTCGGTCGAGATTTATGAATGGCATGGAAAAAGTTGGGAACCATATGTTGCTGATGATGTCCAAGTGCAGTTTTATATGATGAGCCCTTATGTTCTGAAAACCTTATCAACTGATAAGAAGGGTAATTATTTTACAGCATTCAAGGTCCCAGATGTTTATGGGGTTTTCCAATTCAAGGTTGAGTATCATAGGCTTGGGTATACAAGCGTAGCTCTATCAAAGCAGATTCCTGTTCGACCATTCAGACACAATGAATATGAAAGATTTATACCAGCAGCTTATCCTTATTATGGAGCAGCATTTACTATGATGACAGGTTTCTTCGTTTTCACAGCTGTCCACCTATACAACAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0005911 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0008150 GO:0008152 GO:0008250 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009505 GO:0009506 GO:0009653 GO:0009664 GO:0009826 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0031984 GO:0032502 GO:0032989 GO:0032991 GO:0034645 GO:0036211 GO:0040007 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0048589 GO:0048856 GO:0048869 GO:0055044 GO:0060560 GO:0070013 GO:0070085 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0098588 GO:0098796 GO:0098805 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 ko04141 map00510 map00513 map01100 map04141

Pfam Domains

Protein Families

DDOST_48kD

Protein Analysis

434

Amino Acids

48.64

Weight (kDa)

5.88

Isoelectric Point (pI)

29.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OST48_N	PF03345	29 - 282	1.4e-70	OST48, N-terminal domain
OST48_MD	PF23358	296 - 433	5.5e-49	OST48 middle domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66680
fragaria_vesca	FvH4_2g08200 FvH4_2g08200 FvH4_2g08200
malus_domestica	MD05G1070400.v1.1 MD10G1081300.v1.1 MD15G1269000.v1.1
prunus_persica	Prupe.7G148700_v2.0.a1 Prupe.7G148700_v2.0.a1 Prupe.7G148700_v2.0.a1 Prupe.7G148700_v2.0.a1 Prupe.7G148700_v2.0.a1 Prupe.8G102600_v2.0.a1
pyrus_communis	pycom05g06060 pycom10g06430 pycom15g23350
rosa_chinensis	RchiOBHm_Chr6g0262991
rosa_laevigata	RLG00000014386
rosa_multiflora	Rmu_sc0000596.1_g000071
rosa_roxburghii	Rroxscaffold_7G00204800
rosa_rugosa	Rorug06G0002700
rosa_samantha	Rh6AG121400 Rh6BG115000 Rh6CG113500 Rh6DG102800
rosa_wichuraiana	Rw6G010430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1148
AciI	CCGC	1 cut(s)	384
AclWI	GGATC	5 cut(s)	235, 270, 283, 673, 935
AcoI	YGGCCR	2 cut(s)	217, 553
AcsI	RAATTY	1 cut(s)	565
AcuI	CTGAAG	3 cut(s)	393, 594, 887
AcyI	GRCGYC	1 cut(s)	234
AfaI	GTAC	2 cut(s)	224, 537
AfiI	CCNNNNNNNGG	4 cut(s)	200, 201, 1123, 1238
AgeI	ACCGGT	1 cut(s)	314
AgsI	TTSAA	7 cut(s)	7, 142, 178, 544, 589, 1090, 1123
AlwI	GGATC	5 cut(s)	235, 270, 283, 673, 935
AlwNI	CAGNNNCTG	1 cut(s)	823
Ama87I	CYCGRG	2 cut(s)	156, 711
AoxI	GGCC	2 cut(s)	217, 553
ApeKI	GCWGC	4 cut(s)	290, 335, 1223, 1244
ApoI	RAATTY	1 cut(s)	565
AsiGI	ACCGGT	1 cut(s)	314
AspS9I	GGNCC	3 cut(s)	67, 403, 1093
AsuHPI	GGTGA	1 cut(s)	597
AvaI	CYCGRG	2 cut(s)	156, 711
AvaII	GGWCC	3 cut(s)	67, 403, 1093
BalI	TGGCCA	1 cut(s)	555
BamHI	GGATCC	1 cut(s)	275
BanII	GRGCYC	2 cut(s)	788, 1034
BauI	CACGAG	1 cut(s)	430
BbvI	GCAGC	4 cut(s)	277, 322, 1235, 1256
BccI	CCATC	2 cut(s)	122, 661
BceAI	ACGGC	1 cut(s)	232
BciVI	GTATCC	1 cut(s)	304
BfaI	CTAG	1 cut(s)	645
BfmI	CTRYAG	1 cut(s)	922
BfuI	GTATCC	1 cut(s)	304
BglII	AGATCT	1 cut(s)	761
BisI	GCNGC	4 cut(s)	291, 336, 1224, 1245
BlsI	GCNGC	4 cut(s)	292, 337, 1225, 1246
Bme18I	GGWCC	3 cut(s)	67, 403, 1093
BmeT110I	CYCGRG	2 cut(s)	156, 711
BmgT120I	GGNCC	3 cut(s)	67, 403, 1093
BmiI	GGNNCC	6 cut(s)	277, 405, 531, 785, 987, 1095
BmsI	GCATC	1 cut(s)	359
Bsa29I	ATCGAT	1 cut(s)	751
BsaHI	GRCGYC	1 cut(s)	234
BsaWI	WCCGGW	1 cut(s)	314
Bsc4I	CCNNNNNNNGG	4 cut(s)	200, 201, 1123, 1238
Bse118I	RCCGGY	1 cut(s)	314
Bse1I	ACTGG	3 cut(s)	220, 303, 667
BseCI	ATCGAT	1 cut(s)	751
BseLI	CCNNNNNNNGG	4 cut(s)	200, 201, 1123, 1238
BseMII	CTCAG	1 cut(s)	612
BseNI	ACTGG	3 cut(s)	220, 303, 667
BseRI	GAGGAG	1 cut(s)	5
BseXI	GCAGC	4 cut(s)	277, 322, 1235, 1256
BseYI	CCCAGC	1 cut(s)	779
BsgI	GTGCAG	3 cut(s)	713, 791, 1034
Bsh1285I	CGRYCG	2 cut(s)	82, 954
BshFI	GGCC	2 cut(s)	219, 555
BshTI	ACCGGT	1 cut(s)	314
BshVI	ATCGAT	1 cut(s)	751
BsiEI	CGRYCG	2 cut(s)	82, 954
BsiHKCI	CYCGRG	2 cut(s)	156, 711
BsiSI	CCGG	2 cut(s)	65, 315
BslFI	GGGAC	1 cut(s)	1079
BslI	CCNNNNNNNGG	4 cut(s)	200, 201, 1123, 1238
BsmFI	GGGAC	1 cut(s)	1079
BsmI	GAATGC	1 cut(s)	1085
BsnI	GGCC	2 cut(s)	219, 555
BsoBI	CYCGRG	2 cut(s)	156, 711
Bsp1286I	GDGCHC	2 cut(s)	788, 1034
BspACI	CCGC	1 cut(s)	384
BspANI	GGCC	2 cut(s)	219, 555
BspCNI	CTCAG	1 cut(s)	611
BspDI	ATCGAT	1 cut(s)	751
BspHI	TCATGA	1 cut(s)	319
BspLI	GGNNCC	6 cut(s)	277, 405, 531, 785, 987, 1095
BspPI	GGATC	5 cut(s)	235, 270, 283, 673, 935
BspQI	GCTCTTC	1 cut(s)	140
BsrFI	RCCGGY	1 cut(s)	314
BsrI	ACTGG	3 cut(s)	220, 303, 667
BssAI	RCCGGY	1 cut(s)	314
BssNAI	GTATAC	1 cut(s)	1149
BssNI	GRCGYC	1 cut(s)	234
BssSI	CACGAG	1 cut(s)	430
Bst1107I	GTATAC	1 cut(s)	1149
Bst2BI	CACGAG	1 cut(s)	430
Bst4CI	ACNGT	3 cut(s)	259, 266, 452
Bst6I	CTCTTC	1 cut(s)	140
BstACI	GRCGYC	1 cut(s)	234
BstC8I	GCNNGC	4 cut(s)	183, 478, 638, 696
BstDEI	CTNAG	3 cut(s)	598, 765, 833
BstMCI	CGRYCG	2 cut(s)	82, 954
BstMWI	GCNNNNNNNGC	1 cut(s)	620
BstSFI	CTRYAG	1 cut(s)	922
BstV1I	GCAGC	4 cut(s)	277, 322, 1235, 1256
BstX2I	RGATCY	3 cut(s)	275, 665, 761
BstXI	CCANNNNNNTGG	2 cut(s)	286, 896
BstYI	RGATCY	3 cut(s)	275, 665, 761
BstZ17I	GTATAC	1 cut(s)	1149
Bsu15I	ATCGAT	1 cut(s)	751
BsuI	GTATCC	1 cut(s)	304
BsuRI	GGCC	2 cut(s)	219, 555
BsuTUI	ATCGAT	1 cut(s)	751
BtgZI	GCGATG	2 cut(s)	495, 639
BtsIMutI	CAGTG	5 cut(s)	255, 457, 467, 660, 751
Cac8I	GCNNGC	4 cut(s)	183, 478, 638, 696
CaiI	CAGNNNCTG	1 cut(s)	823
CciI	TCATGA	1 cut(s)	319
Cfr10I	RCCGGY	1 cut(s)	314
Cfr13I	GGNCC	3 cut(s)	67, 403, 1093
ClaI	ATCGAT	1 cut(s)	751
CseI	GACGC	1 cut(s)	242
Csp6I	GTAC	2 cut(s)	223, 536
CspAI	ACCGGT	1 cut(s)	314
CviAII	CATG	3 cut(s)	320, 797, 971
CviQI	GTAC	2 cut(s)	223, 536
DdeI	CTNAG	3 cut(s)	598, 765, 833
EaeI	YGGCCR	2 cut(s)	217, 553
Eam1104I	CTCTTC	1 cut(s)	140
EarI	CTCTTC	1 cut(s)	140
Eco24I	GRGCYC	2 cut(s)	788, 1034
Eco47I	GGWCC	3 cut(s)	67, 403, 1093
Eco57I	CTGAAG	3 cut(s)	393, 594, 887
Eco88I	CYCGRG	2 cut(s)	156, 711
EcoO109I	RGGNCCY	2 cut(s)	403, 1093
EcoT22I	ATGCAT	1 cut(s)	352
EcoT38I	GRGCYC	2 cut(s)	788, 1034
FaeI	CATG	3 cut(s)	323, 800, 974
FaqI	GGGAC	1 cut(s)	1079
FatI	CATG	3 cut(s)	319, 796, 970
FauNDI	CATATG	1 cut(s)	991
FblI	GTMKAC	1 cut(s)	1148
Fnu4HI	GCNGC	4 cut(s)	291, 336, 1224, 1245
FriOI	GRGCYC	2 cut(s)	788, 1034
Fsp4HI	GCNGC	4 cut(s)	291, 336, 1224, 1245
FspBI	CTAG	1 cut(s)	645
GluI	GCNGC	4 cut(s)	291, 336, 1224, 1245
GsaI	CCCAGC	1 cut(s)	783
HaeIII	GGCC	2 cut(s)	219, 555
HapII	CCGG	2 cut(s)	65, 315
HgaI	GACGC	1 cut(s)	242
Hin1I	GRCGYC	1 cut(s)	234
Hin1II	CATG	3 cut(s)	323, 800, 974
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HinfI	GANTC	2 cut(s)	87, 1174
HpaII	CCGG	2 cut(s)	65, 315
HphI	GGTGA	1 cut(s)	597
Hpy166II	GTNNAC	4 cut(s)	225, 262, 1149, 1288
Hpy188I	TCNGA	9 cut(s)	355, 365, 448, 499, 571, 825, 867, 1044, 1193
Hpy188III	TCNNGA	4 cut(s)	142, 156, 320, 955
Hpy8I	GTNNAC	4 cut(s)	225, 262, 1149, 1288
Hpy99I	CGWCG	2 cut(s)	107, 191
HpyAV	CCTTC	7 cut(s)	31, 67, 417, 618, 769, 862, 1060
HpyCH4III	ACNGT	3 cut(s)	259, 266, 452
HpyCH4V	TGCA	6 cut(s)	350, 440, 476, 694, 772, 1015
HpyF10VI	GCNNNNNNNGC	1 cut(s)	620
HpyF3I	CTNAG	3 cut(s)	598, 765, 833
Hsp92I	GRCGYC	1 cut(s)	234
Hsp92II	CATG	3 cut(s)	323, 800, 974
LguI	GCTCTTC	1 cut(s)	140
LmnI	GCTCC	4 cut(s)	15, 535, 783, 1241
Lsp1109I	GCAGC	4 cut(s)	277, 322, 1235, 1256
LweI	GCATC	1 cut(s)	359
MaeI	CTAG	1 cut(s)	645
MaeIII	GTNAC	1 cut(s)	204
MboII	GAAGA	4 cut(s)	127, 130, 660, 1261
MflI	RGATCY	3 cut(s)	275, 665, 761
MhlI	GDGCHC	2 cut(s)	788, 1034
MlsI	TGGCCA	1 cut(s)	555
MluCI	AATT	5 cut(s)	504, 522, 565, 1072, 1118
MluNI	TGGCCA	1 cut(s)	555
MlyI	GAGTC	1 cut(s)	96
MmeI	TCCRAC	1 cut(s)	388
Mox20I	TGGCCA	1 cut(s)	555
Mph1103I	ATGCAT	1 cut(s)	352
MscI	TGGCCA	1 cut(s)	555
MseI	TTAA	2 cut(s)	359, 734
Msp20I	TGGCCA	1 cut(s)	555
MspA1I	CMGCKG	1 cut(s)	1283
MspI	CCGG	2 cut(s)	65, 315
Mva1269I	GAATGC	1 cut(s)	1085
MwoI	GCNNNNNNNGC	1 cut(s)	620
NdeI	CATATG	1 cut(s)	991
NlaIII	CATG	3 cut(s)	323, 800, 974
NlaIV	GGNNCC	6 cut(s)	277, 405, 531, 785, 987, 1095
NmeAIII	GCCGAG	1 cut(s)	110
NsiI	ATGCAT	1 cut(s)	352
PaeR7I	CTCGAG	1 cut(s)	156
PagI	TCATGA	1 cut(s)	319
PciSI	GCTCTTC	1 cut(s)	140
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PctI	GAATGC	1 cut(s)	1085
PfeI	GAWTC	1 cut(s)	1174
PinAI	ACCGGT	1 cut(s)	314
PkrI	GCNGC	4 cut(s)	292, 337, 1225, 1246
Ple19I	CGATCG	1 cut(s)	82
PleI	GAGTC	1 cut(s)	95
PpsI	GAGTC	1 cut(s)	95
PpuMI	RGGWCCY	2 cut(s)	403, 1093
Psp5II	RGGWCCY	2 cut(s)	403, 1093
PspFI	CCCAGC	1 cut(s)	779
PspN4I	GGNNCC	6 cut(s)	277, 405, 531, 785, 987, 1095
PspPI	GGNCC	3 cut(s)	67, 403, 1093
PspPPI	RGGWCCY	2 cut(s)	403, 1093
PstNI	CAGNNNCTG	1 cut(s)	823
PsuI	RGATCY	3 cut(s)	275, 665, 761
PvuI	CGATCG	1 cut(s)	82
PvuII	CAGCTG	1 cut(s)	1283
RsaI	GTAC	2 cut(s)	224, 537
RsaNI	GTAC	2 cut(s)	223, 536
SapI	GCTCTTC	1 cut(s)	140
SaqAI	TTAA	2 cut(s)	359, 734
SatI	GCNGC	4 cut(s)	291, 336, 1224, 1245
Sau96I	GGNCC	3 cut(s)	67, 403, 1093
SchI	GAGTC	1 cut(s)	96
SduI	GDGCHC	2 cut(s)	788, 1034
SfaNI	GCATC	1 cut(s)	359
SfcI	CTRYAG	1 cut(s)	922
Sfr274I	CTCGAG	1 cut(s)	156
SinI	GGWCC	3 cut(s)	67, 403, 1093
SlaI	CTCGAG	1 cut(s)	156
SmlI	CTYRAG	1 cut(s)	156
SmoI	CTYRAG	1 cut(s)	156
Sse9I	AATT	5 cut(s)	504, 522, 565, 1072, 1118
SsiI	CCGC	1 cut(s)	384
SspI	AATATT	1 cut(s)	947
SspMI	CTAG	1 cut(s)	645
TaaI	ACNGT	3 cut(s)	259, 266, 452
TaqI	TCGA	8 cut(s)	102, 157, 165, 171, 378, 751, 954, 1183
TaqII	GACCGA	1 cut(s)	940
TasI	AATT	5 cut(s)	504, 522, 565, 1072, 1118
TatI	WGTACW	2 cut(s)	222, 535
TfiI	GAWTC	1 cut(s)	1174
Tru1I	TTAA	2 cut(s)	359, 734
Tru9I	TTAA	2 cut(s)	359, 734
TscAI	CASTG	5 cut(s)	262, 457, 474, 667, 751
TseI	GCWGC	4 cut(s)	290, 335, 1223, 1244
TspDTI	ATGAA	5 cut(s)	478, 924, 978, 1215, 1221
TspRI	CASTG	5 cut(s)	262, 457, 474, 667, 751
VpaK11BI	GGWCC	3 cut(s)	67, 403, 1093
XapI	RAATTY	1 cut(s)	565
XhoI	CTCGAG	1 cut(s)	156
XmiI	GTMKAC	1 cut(s)	1148
XspI	CTAG	1 cut(s)	645
Zsp2I	ATGCAT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.