Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0006719

Physical Location & Seq

Genomic Coordinates Forward (+)

54278343 .. 54284206

Gene Structure 5864 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00204800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGTTGAAGCTCCTCCTCGCCTTCCTAACCCTAACTCTCCCATTCCTCGCCCACTCCTTCTCGCCGGACCACCCCACCGATCGCCGAGTCCTCGTCTTGCTCGACGACCTCGCCATCAAATCCACGCACTCGCTCTTCTTCAAGACCCTCCAATCTCGAGGCTTCGACCTCGATTTCAAGCTCGCCGACGACCCCAAGATCGGGTTACAGAGATACGGCCAGTACACCTATGACGCCTTGATCCTCTTTTCTCCCACTGTTGACCGTTTTGGAGGATCCATTGATCTGGCTGCTATACTGGATTTTGTGGATACCGGTCATGATTTGATTATTGCTGCTGATACTAATGCATCTGATTTAATCCGGCAAATCTCTGTTGAGTGCGGAGTTGATTTCGATGAGGACCCTTCAGCTATGGTTATAGATCACACGAGCTACGCAATATCAGACAGTGAGGGAGATCATACACTGATTGCAAGCAATGATTTCATTTCGTCTGATGCTCCTGTACTTTTCAAGGGGATTGGCCATACAATAAATTCAGAAAATAGCTTGGTTTTGAAAGTTCTCTCAGCTTCACCTTCAGCATATTCAGCTAATCCCAACAGCAAGCTGTCTAGTCCTCCATCGCTCACTGGATCTTCTATATCATTAGTATCAGTTGTGCAGAAGGCTGGGAGCCCAGATAAATATGAGAAATCAGCTAATGAGCAGTTTCTGACTGAACTTAGCAAGTGGGTTTTCCACGAAAGAGGTCATCTGAAGGCTGTGAATGTAAGACACCACAAAGTTGGGGAAGCAGATGAACCATCTATCTACAGGATCAACGATGATGTGGAATATTCGGTTGAGATTTATGAATGGCATGGAAAAAGTTGGGAACCATATGTTGCTGATGATGTCCAAGTGCAGTTTTATATGATGAGCCCTTATGTTCTGAAAACCTTATCAACTGATAAGAAGATTCCTGTTCGACCATTCAGACATAACGAATATGAAAGATTTATACCAGCAGCTTATCCTTATTATGGAGCAGCATTTACTATGTTAGATGGACACTATCATCCCTACAATCTTTACATTAAGGTGTTTTTGAAGCATCTTCTATTGCCCCTTCTCTTGAAGCCTCTTCTATTGCCCCCTCTCTCAACACATCTCGGCATTAGTACATTTATAAAATTTGGTAGAACTGGTTCGAATAATATTGCTCTTGTTAATGCTGGCATTGTGGAGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0005911 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0008150 GO:0008152 GO:0008250 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009505 GO:0009506 GO:0009653 GO:0009664 GO:0009826 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0031984 GO:0032502 GO:0032989 GO:0032991 GO:0034645 GO:0036211 GO:0040007 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0048589 GO:0048856 GO:0048869 GO:0055044 GO:0060560 GO:0070013 GO:0070085 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0098588 GO:0098796 GO:0098805 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 ko04141 map00510 map00513 map01100 map04141

Pfam Domains

Protein Families

DDOST_48kD

Protein Analysis

412

Amino Acids

46.02

Weight (kDa)

5.6

Isoelectric Point (pI)

30.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OST48_N	PF03345	29 - 225	1.2e-49	OST48, N-terminal domain
OST48_MD	PF23358	261 - 319	2.1e-15	OST48 middle domain
OST48_MD	PF23358	314 - 354	2.4e-08	OST48 middle domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66680
fragaria_vesca	FvH4_2g08200 FvH4_2g08200 FvH4_2g08200
malus_domestica	MD05G1070400.v1.1 MD10G1081300.v1.1 MD15G1269000.v1.1
prunus_persica	Prupe.7G148700_v2.0.a1 Prupe.7G148700_v2.0.a1 Prupe.7G148700_v2.0.a1 Prupe.7G148700_v2.0.a1 Prupe.7G148700_v2.0.a1 Prupe.8G102600_v2.0.a1
pyrus_communis	pycom05g06060 pycom10g06430 pycom15g23350
rosa_chinensis	RchiOBHm_Chr6g0262991
rosa_laevigata	RLG00000014386
rosa_multiflora	Rmu_sc0000596.1_g000071
rosa_roxburghii	Rroxscaffold_7G00204800
rosa_rugosa	Rorug06G0002700
rosa_samantha	Rh6AG121400 Rh6BG115000 Rh6CG113500 Rh6DG102800
rosa_wichuraiana	Rw6G010430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1175
AciI	CCGC	1 cut(s)	384
AclWI	GGATC	5 cut(s)	235, 270, 283, 646, 830
AcoI	YGGCCR	2 cut(s)	217, 526
AcsI	RAATTY	2 cut(s)	538, 1178
AcuI	CTGAAG	3 cut(s)	393, 567, 782
AcyI	GRCGYC	1 cut(s)	234
AfaI	GTAC	3 cut(s)	224, 510, 1168
AfiI	CCNNNNNNNGG	3 cut(s)	200, 201, 1028
AgeI	ACCGGT	1 cut(s)	314
AgsI	TTSAA	7 cut(s)	7, 142, 178, 517, 562, 1096, 1123
AlwI	GGATC	5 cut(s)	235, 270, 283, 646, 830
AlwNI	CAGNNNCTG	1 cut(s)	718
Ama87I	CYCGRG	1 cut(s)	156
AoxI	GGCC	2 cut(s)	217, 526
ApeKI	GCWGC	4 cut(s)	290, 335, 1013, 1034
ApoI	RAATTY	2 cut(s)	538, 1178
AsiGI	ACCGGT	1 cut(s)	314
Asp700I	GAANNNNTTC	1 cut(s)	1192
AspS9I	GGNCC	2 cut(s)	67, 403
AsuHPI	GGTGA	1 cut(s)	570
AsuII	TTCGAA	1 cut(s)	1196
AvaI	CYCGRG	1 cut(s)	156
AvaII	GGWCC	2 cut(s)	67, 403
BalI	TGGCCA	1 cut(s)	528
BamHI	GGATCC	1 cut(s)	275
BanII	GRGCYC	2 cut(s)	683, 929
BauI	CACGAG	1 cut(s)	430
BbvI	GCAGC	4 cut(s)	277, 322, 1025, 1046
BccI	CCATC	4 cut(s)	122, 634, 817, 1046
BceAI	ACGGC	1 cut(s)	232
BciVI	GTATCC	1 cut(s)	304
BfaI	CTAG	1 cut(s)	618
BfmI	CTRYAG	1 cut(s)	817
BfuI	GTATCC	1 cut(s)	304
BisI	GCNGC	4 cut(s)	291, 336, 1014, 1035
BlsI	GCNGC	4 cut(s)	292, 337, 1015, 1036
Bme18I	GGWCC	2 cut(s)	67, 403
BmeT110I	CYCGRG	1 cut(s)	156
BmgT120I	GGNCC	2 cut(s)	67, 403
BmiI	GGNNCC	4 cut(s)	277, 405, 680, 882
BmsI	GCATC	3 cut(s)	359, 490, 1108
Bpu14I	TTCGAA	1 cut(s)	1196
BsaHI	GRCGYC	1 cut(s)	234
BsaWI	WCCGGW	1 cut(s)	314
Bsc4I	CCNNNNNNNGG	3 cut(s)	200, 201, 1028
Bse118I	RCCGGY	1 cut(s)	314
Bse1I	ACTGG	4 cut(s)	220, 303, 640, 1195
Bse3DI	GCAATG	1 cut(s)	487
BseGI	GGATG	1 cut(s)	1063
BseLI	CCNNNNNNNGG	3 cut(s)	200, 201, 1028
BseMI	GCAATG	1 cut(s)	487
BseMII	CTCAG	1 cut(s)	585
BseNI	ACTGG	4 cut(s)	220, 303, 640, 1195
BseRI	GAGGAG	1 cut(s)	5
BseXI	GCAGC	4 cut(s)	277, 322, 1025, 1046
BseYI	CCCAGC	1 cut(s)	674
BsgI	GTGCAG	2 cut(s)	686, 929
Bsh1285I	CGRYCG	1 cut(s)	82
BshFI	GGCC	2 cut(s)	219, 528
BshTI	ACCGGT	1 cut(s)	314
BsiEI	CGRYCG	1 cut(s)	82
BsiHKCI	CYCGRG	1 cut(s)	156
BsiSI	CCGG	3 cut(s)	65, 315, 364
BslI	CCNNNNNNNGG	3 cut(s)	200, 201, 1028
BsnI	GGCC	2 cut(s)	219, 528
BsoBI	CYCGRG	1 cut(s)	156
Bsp119I	TTCGAA	1 cut(s)	1196
Bsp1286I	GDGCHC	2 cut(s)	683, 929
Bsp143I	GATC	9 cut(s)	79, 198, 240, 275, 283, 424, 460, 638, 822
BspACI	CCGC	1 cut(s)	384
BspANI	GGCC	2 cut(s)	219, 528
BspCNI	CTCAG	1 cut(s)	584
BspHI	TCATGA	1 cut(s)	319
BspLI	GGNNCC	4 cut(s)	277, 405, 680, 882
BspPI	GGATC	5 cut(s)	235, 270, 283, 646, 830
BspQI	GCTCTTC	1 cut(s)	140
BspT104I	TTCGAA	1 cut(s)	1196
BsrDI	GCAATG	1 cut(s)	487
BsrFI	RCCGGY	1 cut(s)	314
BsrI	ACTGG	4 cut(s)	220, 303, 640, 1195
BssAI	RCCGGY	1 cut(s)	314
BssMI	GATC	9 cut(s)	79, 198, 240, 275, 283, 424, 460, 638, 822
BssNI	GRCGYC	1 cut(s)	234
BssSI	CACGAG	1 cut(s)	430
Bst2BI	CACGAG	1 cut(s)	430
Bst4CI	ACNGT	3 cut(s)	259, 266, 452
Bst6I	CTCTTC	2 cut(s)	140, 1134
BstACI	GRCGYC	1 cut(s)	234
BstBI	TTCGAA	1 cut(s)	1196
BstC8I	GCNNGC	4 cut(s)	183, 478, 611, 1222
BstDEI	CTNAG	2 cut(s)	571, 728
BstF5I	GGATG	1 cut(s)	1063
BstKTI	GATC	9 cut(s)	82, 201, 243, 278, 286, 427, 463, 641, 825
BstMBI	GATC	9 cut(s)	79, 198, 240, 275, 283, 424, 460, 638, 822
BstMCI	CGRYCG	1 cut(s)	82
BstMWI	GCNNNNNNNGC	1 cut(s)	593
BstSFI	CTRYAG	1 cut(s)	817
BstV1I	GCAGC	4 cut(s)	277, 322, 1025, 1046
BstX2I	RGATCY	2 cut(s)	275, 638
BstXI	CCANNNNNNTGG	2 cut(s)	286, 791
BstYI	RGATCY	2 cut(s)	275, 638
BsuI	GTATCC	1 cut(s)	304
BsuRI	GGCC	2 cut(s)	219, 528
BtgZI	GCGATG	1 cut(s)	612
BtsCI	GGATG	1 cut(s)	1063
BtsIMutI	CAGTG	4 cut(s)	255, 457, 467, 633
Cac8I	GCNNGC	4 cut(s)	183, 478, 611, 1222
CaiI	CAGNNNCTG	1 cut(s)	718
CciI	TCATGA	1 cut(s)	319
Cfr10I	RCCGGY	1 cut(s)	314
Cfr13I	GGNCC	2 cut(s)	67, 403
CseI	GACGC	1 cut(s)	242
Csp6I	GTAC	3 cut(s)	223, 509, 1167
CspAI	ACCGGT	1 cut(s)	314
CviAII	CATG	2 cut(s)	320, 866
CviQI	GTAC	3 cut(s)	223, 509, 1167
DdeI	CTNAG	2 cut(s)	571, 728
DpnI	GATC	9 cut(s)	81, 200, 242, 277, 285, 426, 462, 640, 824
DpnII	GATC	9 cut(s)	79, 198, 240, 275, 283, 424, 460, 638, 822
EaeI	YGGCCR	2 cut(s)	217, 526
Eam1104I	CTCTTC	2 cut(s)	140, 1134
EarI	CTCTTC	2 cut(s)	140, 1134
Eco24I	GRGCYC	2 cut(s)	683, 929
Eco47I	GGWCC	2 cut(s)	67, 403
Eco57I	CTGAAG	3 cut(s)	393, 567, 782
Eco88I	CYCGRG	1 cut(s)	156
EcoO109I	RGGNCCY	1 cut(s)	403
EcoT22I	ATGCAT	1 cut(s)	352
EcoT38I	GRGCYC	2 cut(s)	683, 929
FaeI	CATG	2 cut(s)	323, 869
FatI	CATG	2 cut(s)	319, 865
FauNDI	CATATG	1 cut(s)	886
Fnu4HI	GCNGC	4 cut(s)	291, 336, 1014, 1035
FokI	GGATG	1 cut(s)	1050
FriOI	GRGCYC	2 cut(s)	683, 929
Fsp4HI	GCNGC	4 cut(s)	291, 336, 1014, 1035
FspBI	CTAG	1 cut(s)	618
GluI	GCNGC	4 cut(s)	291, 336, 1014, 1035
GsaI	CCCAGC	1 cut(s)	678
HaeIII	GGCC	2 cut(s)	219, 528
HapII	CCGG	3 cut(s)	65, 315, 364
HgaI	GACGC	1 cut(s)	242
Hin1I	GRCGYC	1 cut(s)	234
Hin1II	CATG	2 cut(s)	323, 869
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HinfI	GANTC	2 cut(s)	87, 964
HpaII	CCGG	3 cut(s)	65, 315, 364
HphI	GGTGA	1 cut(s)	570
Hpy166II	GTNNAC	2 cut(s)	225, 262
Hpy188I	TCNGA	8 cut(s)	355, 448, 499, 544, 720, 762, 939, 983
Hpy188III	TCNNGA	4 cut(s)	142, 156, 320, 1120
Hpy8I	GTNNAC	2 cut(s)	225, 262
Hpy99I	CGWCG	2 cut(s)	107, 191
HpyAV	CCTTC	7 cut(s)	31, 67, 417, 591, 664, 757, 1124
HpyCH4III	ACNGT	3 cut(s)	259, 266, 452
HpyCH4V	TGCA	4 cut(s)	350, 476, 667, 910
HpyF10VI	GCNNNNNNNGC	1 cut(s)	593
HpyF3I	CTNAG	2 cut(s)	571, 728
Hsp92I	GRCGYC	1 cut(s)	234
Hsp92II	CATG	2 cut(s)	323, 869
Kzo9I	GATC	9 cut(s)	79, 198, 240, 275, 283, 424, 460, 638, 822
LguI	GCTCTTC	1 cut(s)	140
LmnI	GCTCC	4 cut(s)	15, 508, 678, 1031
Lsp1109I	GCAGC	4 cut(s)	277, 322, 1025, 1046
LweI	GCATC	3 cut(s)	359, 490, 1108
MaeI	CTAG	1 cut(s)	618
MaeIII	GTNAC	1 cut(s)	204
MalI	GATC	9 cut(s)	81, 200, 242, 277, 285, 426, 462, 640, 824
MboI	GATC	9 cut(s)	79, 198, 240, 275, 283, 424, 460, 638, 822
MboII	GAAGA	6 cut(s)	127, 130, 633, 973, 1094, 1121
MflI	RGATCY	2 cut(s)	275, 638
MhlI	GDGCHC	2 cut(s)	683, 929
MlsI	TGGCCA	1 cut(s)	528
MluCI	AATT	2 cut(s)	538, 1178
MluNI	TGGCCA	1 cut(s)	528
MlyI	GAGTC	1 cut(s)	96
Mox20I	TGGCCA	1 cut(s)	528
Mph1103I	ATGCAT	1 cut(s)	352
MroXI	GAANNNNTTC	1 cut(s)	1192
MscI	TGGCCA	1 cut(s)	528
MseI	TTAA	4 cut(s)	359, 1083, 1215, 1237
MslI	CAYNNNNRTG	1 cut(s)	1085
Msp20I	TGGCCA	1 cut(s)	528
MspI	CCGG	3 cut(s)	65, 315, 364
MwoI	GCNNNNNNNGC	1 cut(s)	593
NdeI	CATATG	1 cut(s)	886
NdeII	GATC	9 cut(s)	79, 198, 240, 275, 283, 424, 460, 638, 822
NlaIII	CATG	2 cut(s)	323, 869
NlaIV	GGNNCC	4 cut(s)	277, 405, 680, 882
NmeAIII	GCCGAG	2 cut(s)	110, 1137
NsiI	ATGCAT	1 cut(s)	352
NspV	TTCGAA	1 cut(s)	1196
PaeR7I	CTCGAG	1 cut(s)	156
PagI	TCATGA	1 cut(s)	319
PciSI	GCTCTTC	1 cut(s)	140
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PdmI	GAANNNNTTC	1 cut(s)	1192
PfeI	GAWTC	1 cut(s)	964
PinAI	ACCGGT	1 cut(s)	314
PkrI	GCNGC	4 cut(s)	292, 337, 1015, 1036
Ple19I	CGATCG	1 cut(s)	82
PleI	GAGTC	1 cut(s)	95
PpsI	GAGTC	1 cut(s)	95
PpuMI	RGGWCCY	1 cut(s)	403
PsiI	TTATAA	1 cut(s)	1175
Psp5II	RGGWCCY	1 cut(s)	403
PspFI	CCCAGC	1 cut(s)	674
PspN4I	GGNNCC	4 cut(s)	277, 405, 680, 882
PspPI	GGNCC	2 cut(s)	67, 403
PspPPI	RGGWCCY	1 cut(s)	403
PsrI	GAACNNNNNNTAC	2 cut(s)	1177, 1209
PstNI	CAGNNNCTG	1 cut(s)	718
PsuI	RGATCY	2 cut(s)	275, 638
PvuI	CGATCG	1 cut(s)	82
RsaI	GTAC	3 cut(s)	224, 510, 1168
RsaNI	GTAC	3 cut(s)	223, 509, 1167
RseI	CAYNNNNRTG	1 cut(s)	1085
SapI	GCTCTTC	1 cut(s)	140
SaqAI	TTAA	4 cut(s)	359, 1083, 1215, 1237
SatI	GCNGC	4 cut(s)	291, 336, 1014, 1035
Sau3AI	GATC	9 cut(s)	79, 198, 240, 275, 283, 424, 460, 638, 822
Sau96I	GGNCC	2 cut(s)	67, 403
SchI	GAGTC	1 cut(s)	96
SduI	GDGCHC	2 cut(s)	683, 929
SfaNI	GCATC	3 cut(s)	359, 490, 1108
SfcI	CTRYAG	1 cut(s)	817
Sfr274I	CTCGAG	1 cut(s)	156
SfuI	TTCGAA	1 cut(s)	1196
SinI	GGWCC	2 cut(s)	67, 403
SlaI	CTCGAG	1 cut(s)	156
SmiMI	CAYNNNNRTG	1 cut(s)	1085
SmlI	CTYRAG	1 cut(s)	156
SmoI	CTYRAG	1 cut(s)	156
Sse9I	AATT	2 cut(s)	538, 1178
SsiI	CCGC	1 cut(s)	384
SspI	AATATT	2 cut(s)	842, 1204
SspMI	CTAG	1 cut(s)	618
TaaI	ACNGT	3 cut(s)	259, 266, 452
TaqI	TCGA	7 cut(s)	102, 157, 165, 171, 396, 973, 1196
TasI	AATT	2 cut(s)	538, 1178
TatI	WGTACW	3 cut(s)	222, 508, 1166
TfiI	GAWTC	1 cut(s)	964
Tru1I	TTAA	4 cut(s)	359, 1083, 1215, 1237
Tru9I	TTAA	4 cut(s)	359, 1083, 1215, 1237
TscAI	CASTG	4 cut(s)	262, 457, 474, 640
TseI	GCWGC	4 cut(s)	290, 335, 1013, 1034
TspDTI	ATGAA	4 cut(s)	478, 819, 873, 1011
TspRI	CASTG	4 cut(s)	262, 457, 474, 640
VpaK11BI	GGWCC	2 cut(s)	67, 403
XapI	RAATTY	2 cut(s)	538, 1178
XhoI	CTCGAG	1 cut(s)	156
XmnI	GAANNNNTTC	1 cut(s)	1192
XspI	CTAG	1 cut(s)	618
Zsp2I	ATGCAT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.