Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0006719

Physical Location & Seq

Genomic Coordinates Forward (+)

7808523 .. 7812517

Gene Structure 3995 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g06060.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGTCGAAGCTCGTCGGCGTCCTCGCCTTCCTAACCCTAACCCTCCCATTTCTGGCCCACTCCTTCTCGCCGGACCACCCCACCGACCGCCGCGTTCTCGTTCTGCTTGACGACCTCGCCGTCAAATCCTCCCATTCCTTGTTCTTCAAGTCCCTCCAGTCTCGAGGCTTCGAGCTCGATTTCAAGCTCGCCGATGATCCCAAGATCTCCTTGCAGCGATACGGCCTATACAGCTACGACGCCTTGATCCTCTTTTCTCCTTCCGTCGATCGTTTTGGAGGATCCATTGATCTGGCTGGTATACTGGATTTCGTGGATAGCGGTCATGATTTGATCATTGCAGCTGATACCCATGCATCTGATTTGATCCGCCAAATCGCAGTTGAGTGCGGAGTTGATTTCGATGAGGATCCTGCTGCTATGGTCGTAGATCACACAAGCTATGCAGTTTCAGACACTGAAGGCGATCATACAGTTATTGCTAGTGATGATTTCATCAAGTCTGATGTAATTTTGGGAAGTGAGAAAATTGAGGCTCCTGTACTTTTCCAAGGGATTGGCCATACAGTAAACTCTGAAAATAGCCTGGTTTTGAAAGTTCTCTCAGCTTCACCTTCAGCATATTCTTCTAACCCCAAAGGCAAGCTATCAAATCCTCCATCGCTCACTGGATCTGCTATATCTTTAGTTTCAGTTGTGCAGGCAAGAAACAATGCTCGGGTTTTGATATCTGGTTCATTAAGTTTGTTCAGCGATAGGTTTTTCAGATCTAAGGTGCAGAAGGCTGGAAGCTCAAAGAAACATGAGAAATCGGCAAATGAGCAGTTTCTGACTGAACTTAGCAAATGGGTCTTCCATGAAAGAGGTCATCTCAAGGCTGTGAATGTAAAACACCAGAGAGTTGGGGAAGCCGATGAACCTGCAATTTACAGGATCAATGATGACTTGGAATATTCGGTCGAGATTTATGAATGGCGTGGACAACGTTGGGAACCATATATTGCTGATGATCGATCCAAGTGCAGTTTTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 ko04141 map00510 map00513 map01100 map04141

Pfam Domains

Protein Families

DDOST_48kD

Protein Analysis

345

Amino Acids

37.97

Weight (kDa)

5.44

Isoelectric Point (pI)

29.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66680
fragaria_vesca	FvH4_2g08200 FvH4_2g08200 FvH4_2g08200
malus_domestica	MD05G1070400.v1.1 MD10G1081300.v1.1 MD15G1269000.v1.1
prunus_persica	Prupe.7G148700_v2.0.a1 Prupe.7G148700_v2.0.a1 Prupe.7G148700_v2.0.a1 Prupe.7G148700_v2.0.a1 Prupe.7G148700_v2.0.a1 Prupe.8G102600_v2.0.a1
pyrus_communis	pycom05g06060 pycom10g06430 pycom15g23350
rosa_chinensis	RchiOBHm_Chr6g0262991
rosa_laevigata	RLG00000014386
rosa_multiflora	Rmu_sc0000596.1_g000071
rosa_roxburghii	Rroxscaffold_7G00204800
rosa_rugosa	Rorug06G0002700
rosa_samantha	Rh6AG121400 Rh6BG115000 Rh6CG113500 Rh6DG102800
rosa_wichuraiana	Rw6G010430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	119
Acc36I	ACCTGC	1 cut(s)	928
AccI	GTMKAC	1 cut(s)	301
AccII	CGCG	1 cut(s)	93
AciI	CCGC	5 cut(s)	88, 91, 321, 370, 390
AclI	AACGTT	1 cut(s)	985
AcoI	YGGCCR	1 cut(s)	559
AcuI	CTGAAG	2 cut(s)	480, 600
AcyI	GRCGYC	2 cut(s)	18, 240
AfaI	GTAC	1 cut(s)	543
AfiI	CCNNNNNNNGG	1 cut(s)	52
AgsI	TTSAA	3 cut(s)	148, 184, 595
AjnI	CCWGG	1 cut(s)	585
AluBI	AGCT	9 cut(s)	10, 175, 187, 234, 344, 441, 608, 646, 792
AluI	AGCT	9 cut(s)	10, 175, 187, 234, 344, 441, 608, 646, 792
Alw21I	GWGCWC	1 cut(s)	177
Alw26I	GTCTC	1 cut(s)	165
AlwNI	CAGNNNCTG	2 cut(s)	458, 829
Ama87I	CYCGRG	2 cut(s)	162, 717
AoxI	GGCC	3 cut(s)	54, 223, 559
ApeKI	GCWGC	3 cut(s)	214, 341, 416
AspS9I	GGNCC	2 cut(s)	55, 73
AsuHPI	GGTGA	1 cut(s)	603
AvaI	CYCGRG	2 cut(s)	162, 717
AvaII	GGWCC	1 cut(s)	73
BalI	TGGCCA	1 cut(s)	561
BamHI	GGATCC	2 cut(s)	281, 409
BanII	GRGCYC	1 cut(s)	177
BbsI	GAAGAC	1 cut(s)	844
Bbv12I	GWGCWC	1 cut(s)	177
BbvI	GCAGC	3 cut(s)	226, 353, 403
BccI	CCATC	1 cut(s)	667
BceAI	ACGGC	2 cut(s)	104, 238
BcgI	CGANNNNNNTGC	3 cut(s)	902, 936, 1002
BciT130I	CCWGG	1 cut(s)	587
BclI	TGATCA	1 cut(s)	333
BcoDI	GTCTC	1 cut(s)	165
BfaI	CTAG	1 cut(s)	483
BfuAI	ACCTGC	1 cut(s)	928
BglII	AGATCT	2 cut(s)	204, 767
BisI	GCNGC	4 cut(s)	91, 215, 342, 417
BlsI	GCNGC	4 cut(s)	92, 216, 343, 418
Bme1390I	CCNGG	1 cut(s)	587
Bme18I	GGWCC	1 cut(s)	73
BmeT110I	CYCGRG	2 cut(s)	162, 717
BmgT120I	GGNCC	2 cut(s)	55, 73
BmiI	GGNNCC	4 cut(s)	283, 411, 537, 993
BmrFI	CCNGG	1 cut(s)	587
BmsI	GCATC	1 cut(s)	365
BpiI	GAAGAC	1 cut(s)	844
BplI	GAGNNNNNCTC	2 cut(s)	855, 887
BpmI	CTGGAG	1 cut(s)	140
BpuEI	CTTGAG	1 cut(s)	857
Bsa29I	ATCGAT	1 cut(s)	1012
BsaBI	GATNNNNATC	1 cut(s)	408
BsaHI	GRCGYC	2 cut(s)	18, 240
BsaJI	CCNNGG	1 cut(s)	550
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
Bse1I	ACTGG	3 cut(s)	157, 309, 673
Bse3DI	GCAATG	1 cut(s)	336
Bse8I	GATNNNNATC	1 cut(s)	408
BseBI	CCWGG	1 cut(s)	587
BseCI	ATCGAT	1 cut(s)	1012
BseDI	CCNNGG	1 cut(s)	550
BseJI	GATNNNNATC	1 cut(s)	408
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseMI	GCAATG	1 cut(s)	336
BseMII	CTCAG	1 cut(s)	618
BseNI	ACTGG	3 cut(s)	157, 309, 673
BseXI	GCAGC	3 cut(s)	226, 353, 403
BsgI	GTGCAG	2 cut(s)	719, 797
Bsh1236I	CGCG	1 cut(s)	93
Bsh1285I	CGRYCG	3 cut(s)	88, 271, 960
BshFI	GGCC	3 cut(s)	56, 225, 561
BshVI	ATCGAT	1 cut(s)	1012
BsiEI	CGRYCG	3 cut(s)	88, 271, 960
BsiHKAI	GWGCWC	1 cut(s)	177
BsiHKCI	CYCGRG	2 cut(s)	162, 717
BsiSI	CCGG	1 cut(s)	71
BslFI	GGGAC	1 cut(s)	136
BslI	CCNNNNNNNGG	1 cut(s)	52
BsmAI	GTCTC	1 cut(s)	165
BsmFI	GGGAC	1 cut(s)	136
BsnI	GGCC	3 cut(s)	56, 225, 561
BsoBI	CYCGRG	2 cut(s)	162, 717
Bsp1286I	GDGCHC	1 cut(s)	177
BspACI	CCGC	5 cut(s)	88, 91, 321, 370, 390
BspANI	GGCC	3 cut(s)	56, 225, 561
BspCNI	CTCAG	1 cut(s)	617
BspDI	ATCGAT	1 cut(s)	1012
BspFNI	CGCG	1 cut(s)	93
BspHI	TCATGA	1 cut(s)	325
BspLI	GGNNCC	4 cut(s)	283, 411, 537, 993
BspMI	ACCTGC	1 cut(s)	928
BsrDI	GCAATG	1 cut(s)	336
BsrI	ACTGG	3 cut(s)	157, 309, 673
BssECI	CCNNGG	1 cut(s)	550
BssNAI	GTATAC	1 cut(s)	302
BssNI	GRCGYC	2 cut(s)	18, 240
BssT1I	CCWWGG	1 cut(s)	550
Bst1107I	GTATAC	1 cut(s)	302
Bst2UI	CCWGG	1 cut(s)	587
Bst4CI	ACNGT	2 cut(s)	475, 568
BstACI	GRCGYC	2 cut(s)	18, 240
BstC8I	GCNNGC	3 cut(s)	189, 644, 702
BstDEI	CTNAG	3 cut(s)	604, 771, 839
BstFNI	CGCG	1 cut(s)	93
BstMAI	GTCTC	1 cut(s)	165
BstMCI	CGRYCG	3 cut(s)	88, 271, 960
BstMWI	GCNNNNNNNGC	1 cut(s)	231
BstNI	CCWGG	1 cut(s)	587
BstSCI	CCNGG	1 cut(s)	585
BstUI	CGCG	1 cut(s)	93
BstV1I	GCAGC	3 cut(s)	226, 353, 403
BstV2I	GAAGAC	1 cut(s)	844
BstX2I	RGATCY	5 cut(s)	204, 281, 409, 671, 767
BstXI	CCANNNNNNTGG	3 cut(s)	292, 557, 902
BstYI	RGATCY	5 cut(s)	204, 281, 409, 671, 767
BstZ17I	GTATAC	1 cut(s)	302
Bsu15I	ATCGAT	1 cut(s)	1012
BsuRI	GGCC	3 cut(s)	56, 225, 561
BsuTUI	ATCGAT	1 cut(s)	1012
BtgZI	GCGATG	1 cut(s)	645
BtsIMutI	CAGTG	2 cut(s)	456, 666
BveI	ACCTGC	1 cut(s)	928
Cac8I	GCNNGC	3 cut(s)	189, 644, 702
CaiI	CAGNNNCTG	2 cut(s)	458, 829
CciI	TCATGA	1 cut(s)	325
Cfr13I	GGNCC	2 cut(s)	55, 73
ClaI	ATCGAT	1 cut(s)	1012
CseI	GACGC	2 cut(s)	7, 248
Csp6I	GTAC	1 cut(s)	542
CviAII	CATG	5 cut(s)	326, 353, 803, 857, 1032
CviQI	GTAC	1 cut(s)	542
DdeI	CTNAG	3 cut(s)	604, 771, 839
DrdI	GACNNNNNNGTC	1 cut(s)	119
DseDI	GACNNNNNNGTC	1 cut(s)	119
EaeI	YGGCCR	1 cut(s)	559
EciI	GGCGGA	1 cut(s)	359
Ecl136II	GAGCTC	1 cut(s)	175
Eco130I	CCWWGG	1 cut(s)	550
Eco24I	GRGCYC	1 cut(s)	177
Eco32I	GATATC	1 cut(s)	729
Eco47I	GGWCC	1 cut(s)	73
Eco53kI	GAGCTC	1 cut(s)	175
Eco57I	CTGAAG	2 cut(s)	480, 600
Eco88I	CYCGRG	2 cut(s)	162, 717
EcoICRI	GAGCTC	1 cut(s)	175
EcoRII	CCWGG	1 cut(s)	585
EcoRV	GATATC	1 cut(s)	729
EcoT14I	CCWWGG	1 cut(s)	550
EcoT22I	ATGCAT	1 cut(s)	358
EcoT38I	GRGCYC	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	550
FaeI	CATG	5 cut(s)	329, 356, 806, 860, 1035
FalI	AAGNNNNNCTT	2 cut(s)	194, 226
FaqI	GGGAC	1 cut(s)	136
FatI	CATG	5 cut(s)	325, 352, 802, 856, 1031
FbaI	TGATCA	1 cut(s)	333
FblI	GTMKAC	1 cut(s)	301
Fnu4HI	GCNGC	4 cut(s)	91, 215, 342, 417
FriOI	GRGCYC	1 cut(s)	177
Fsp4HI	GCNGC	4 cut(s)	91, 215, 342, 417
FspBI	CTAG	1 cut(s)	483
GluI	GCNGC	4 cut(s)	91, 215, 342, 417
GsuI	CTGGAG	1 cut(s)	140
HaeIII	GGCC	3 cut(s)	56, 225, 561
HapII	CCGG	1 cut(s)	71
HgaI	GACGC	2 cut(s)	7, 248
Hin1I	GRCGYC	2 cut(s)	18, 240
Hin1II	CATG	5 cut(s)	329, 356, 806, 860, 1035
HpaII	CCGG	1 cut(s)	71
HphI	GGTGA	1 cut(s)	603
Hpy166II	GTNNAC	3 cut(s)	302, 571, 980
Hpy188I	TCNGA	6 cut(s)	361, 454, 505, 577, 767, 831
Hpy188III	TCNNGA	3 cut(s)	162, 326, 961
Hpy8I	GTNNAC	3 cut(s)	302, 571, 980
Hpy99I	CGWCG	3 cut(s)	17, 242, 269
HpyAV	CCTTC	6 cut(s)	37, 73, 270, 455, 624, 775
HpyCH4III	ACNGT	2 cut(s)	475, 568
HpyCH4IV	ACGT	1 cut(s)	985
HpyCH4V	TGCA	8 cut(s)	214, 341, 356, 446, 700, 778, 923, 1023
HpyF10VI	GCNNNNNNNGC	1 cut(s)	231
HpyF3I	CTNAG	3 cut(s)	604, 771, 839
HpySE526I	ACGT	1 cut(s)	985
Hsp92I	GRCGYC	2 cut(s)	18, 240
Hsp92II	CATG	5 cut(s)	329, 356, 806, 860, 1035
Ksp22I	TGATCA	1 cut(s)	333
LmnI	GCTCC	1 cut(s)	541
Lsp1109I	GCAGC	3 cut(s)	226, 353, 403
LweI	GCATC	1 cut(s)	365
MaeI	CTAG	1 cut(s)	483
MaeII	ACGT	1 cut(s)	985
MboII	GAAGA	3 cut(s)	136, 618, 844
MflI	RGATCY	5 cut(s)	204, 281, 409, 671, 767
MhlI	GDGCHC	1 cut(s)	177
MlsI	TGGCCA	1 cut(s)	561
MluCI	AATT	3 cut(s)	510, 528, 924
MluNI	TGGCCA	1 cut(s)	561
Mox20I	TGGCCA	1 cut(s)	561
Mph1103I	ATGCAT	1 cut(s)	358
MscI	TGGCCA	1 cut(s)	561
MseI	TTAA	1 cut(s)	740
Msp20I	TGGCCA	1 cut(s)	561
MspA1I	CMGCKG	1 cut(s)	344
MspI	CCGG	1 cut(s)	71
MspR9I	CCNGG	1 cut(s)	587
MvaI	CCWGG	1 cut(s)	587
MvnI	CGCG	1 cut(s)	93
MwoI	GCNNNNNNNGC	1 cut(s)	231
NlaIII	CATG	5 cut(s)	329, 356, 806, 860, 1035
NlaIV	GGNNCC	4 cut(s)	283, 411, 537, 993
NsiI	ATGCAT	1 cut(s)	358
PaeR7I	CTCGAG	1 cut(s)	162
PagI	TCATGA	1 cut(s)	325
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PkrI	GCNGC	4 cut(s)	92, 216, 343, 418
Ple19I	CGATCG	1 cut(s)	271
Psp124BI	GAGCTC	1 cut(s)	177
Psp1406I	AACGTT	1 cut(s)	985
Psp6I	CCWGG	1 cut(s)	585
PspGI	CCWGG	1 cut(s)	585
PspN4I	GGNNCC	4 cut(s)	283, 411, 537, 993
PspPI	GGNCC	2 cut(s)	55, 73
PstNI	CAGNNNCTG	2 cut(s)	458, 829
PsuI	RGATCY	5 cut(s)	204, 281, 409, 671, 767
PvuI	CGATCG	1 cut(s)	271
PvuII	CAGCTG	1 cut(s)	344
RsaI	GTAC	1 cut(s)	543
RsaNI	GTAC	1 cut(s)	542
SacI	GAGCTC	1 cut(s)	177
SaqAI	TTAA	1 cut(s)	740
SatI	GCNGC	4 cut(s)	91, 215, 342, 417
Sau96I	GGNCC	2 cut(s)	55, 73
ScrFI	CCNGG	1 cut(s)	587
SduI	GDGCHC	1 cut(s)	177
SfaNI	GCATC	1 cut(s)	365
Sfr274I	CTCGAG	1 cut(s)	162
SinI	GGWCC	1 cut(s)	73
SlaI	CTCGAG	1 cut(s)	162
SmlI	CTYRAG	2 cut(s)	162, 872
SmoI	CTYRAG	2 cut(s)	162, 872
Sse9I	AATT	3 cut(s)	510, 528, 924
SsiI	CCGC	5 cut(s)	88, 91, 321, 370, 390
SspI	AATATT	1 cut(s)	953
SspMI	CTAG	1 cut(s)	483
SstI	GAGCTC	1 cut(s)	177
StyD4I	CCNGG	1 cut(s)	585
StyI	CCWWGG	1 cut(s)	550
TaaI	ACNGT	2 cut(s)	475, 568
TaiI	ACGT	1 cut(s)	988
TaqI	TCGA	8 cut(s)	5, 163, 171, 177, 267, 402, 960, 1012
TaqII	GACCGA	1 cut(s)	946
TasI	AATT	3 cut(s)	510, 528, 924
TatI	WGTACW	1 cut(s)	541
TauI	GCSGC	1 cut(s)	93
Tru1I	TTAA	1 cut(s)	740
Tru9I	TTAA	1 cut(s)	740
TscAI	CASTG	2 cut(s)	463, 673
TseI	GCWGC	3 cut(s)	214, 341, 416
TspDTI	ATGAA	5 cut(s)	484, 726, 873, 930, 984
TspGWI	ACGGA	1 cut(s)	253
TspRI	CASTG	2 cut(s)	463, 673
VpaK11BI	GGWCC	1 cut(s)	73
XhoI	CTCGAG	1 cut(s)	162
XmiI	GTMKAC	1 cut(s)	301
XspI	CTAG	1 cut(s)	483
Zsp2I	ATGCAT	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.