Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0006719

Physical Location & Seq

Genomic Coordinates Reverse (-)

12948430 .. 12955160

Gene Structure 6731 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG102800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGTTGAAGCTCCTCCTCGCCTTCCTAACCCTAACTCTCCCATTCCTCGCCCACTCCTTCTCGCCGGACCACCCCACCGATCGCCGAGTCCTCGTCTTGCTCGACGACCTCGCCATCAAATCCTCGCACTCGCTCTTCTTCAAGACCCTCCAATCTCGAGGCTTCGACCTCGATTTCAAGCTCGCCGACGACCCCAAGATCGGGTTACAGAGATACGGCCAGTACACCTATGACGCCTTGATCCTCTTTTCTCCCACTGTTGACCGTTTTGGAGGATCCATTGATCTGGCTGCTATACTGGATTTTGTGGATACCGGTCATGATTTGATTATTGCTGCTGATACTAATGCATCTGATTTAATCCGACAAATCTCTGTCGAGTGCGGAGTTGATTTTGATGAGGACCCTTCAGCTATGGTTATAGATCACACGAGCTATGCAGTATCAGACAGTGAGGGAGATCATACACTGATTGCAAGCGATGATTTCATTTCGTCTGATGTAATTTTGGGAAGCAAGAAAATTGAGGCTCCTGTACTTTTCAAGGGGATTGGCCATACAATAAATTCAGAAAATAGCTTGGTTTTGAAAGTTCTCTCAGCTTCACCTTCAGCATATTCAGCTAATCCCAACAGCAAGCTGTCTAGTCCTCCATCGCTCACTGGATCTTCTATATCATTAGTATCAGTTGTGCAGGCAAGAAACAATGCTCGGGTTTTGATCTCTGGGTCATTAAGTATGTTCAGTGATCGATTTTTTAGATCTAAGGTGCAGAAGGCTGGGAGCCCAGATAAACATGAGAAATCAGCTAATGAGCAGTTTCTGACTGAACTTAGCAAGTGGGTTTTCCACGAAAGAGGTCATCTGAAGGCTGTGAATGTAAGACACCACAAAGTTGGGGAAGCAGATGAACCAGCTATCTACAGGATCAACGATGATGTGGTAATTTTTTTTACTGTGTTAGTTAAACTCCACGAAGAGGGGAAAAAAAGTATACTTTTTGGTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0005911 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0008150 GO:0008152 GO:0008250 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009505 GO:0009506 GO:0009653 GO:0009664 GO:0009826 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0031984 GO:0032502 GO:0032989 GO:0032991 GO:0034645 GO:0036211 GO:0040007 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0048589 GO:0048856 GO:0048869 GO:0055044 GO:0060560 GO:0070013 GO:0070085 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0098588 GO:0098796 GO:0098805 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 ko04141 map00510 map00513 map01100 map04141

Pfam Domains

Protein Families

DDOST_48kD

Protein Analysis

336

Amino Acids

36.9

Weight (kDa)

5.68

Isoelectric Point (pI)

29.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OST48_N	PF03345	29 - 282	6.3e-71	OST48, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66680
fragaria_vesca	FvH4_2g08200 FvH4_2g08200 FvH4_2g08200
malus_domestica	MD05G1070400.v1.1 MD10G1081300.v1.1 MD15G1269000.v1.1
prunus_persica	Prupe.7G148700_v2.0.a1 Prupe.7G148700_v2.0.a1 Prupe.7G148700_v2.0.a1 Prupe.7G148700_v2.0.a1 Prupe.7G148700_v2.0.a1 Prupe.8G102600_v2.0.a1
pyrus_communis	pycom05g06060 pycom10g06430 pycom15g23350
rosa_chinensis	RchiOBHm_Chr6g0262991
rosa_laevigata	RLG00000014386
rosa_multiflora	Rmu_sc0000596.1_g000071
rosa_roxburghii	Rroxscaffold_7G00204800
rosa_rugosa	Rorug06G0002700
rosa_samantha	Rh6AG121400 Rh6BG115000 Rh6CG113500 Rh6DG102800
rosa_wichuraiana	Rw6G010430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	994
AciI	CCGC	1 cut(s)	384
AclWI	GGATC	5 cut(s)	235, 270, 283, 673, 935
AcoI	YGGCCR	2 cut(s)	217, 553
AcsI	RAATTY	1 cut(s)	565
AcuI	CTGAAG	3 cut(s)	393, 594, 887
AcyI	GRCGYC	1 cut(s)	234
AfaI	GTAC	2 cut(s)	224, 537
AfiI	CCNNNNNNNGG	3 cut(s)	200, 201, 979
AgeI	ACCGGT	1 cut(s)	314
AgsI	TTSAA	5 cut(s)	7, 142, 178, 544, 589
AlwI	GGATC	5 cut(s)	235, 270, 283, 673, 935
AlwNI	CAGNNNCTG	1 cut(s)	823
Ama87I	CYCGRG	2 cut(s)	156, 711
AoxI	GGCC	2 cut(s)	217, 553
ApeKI	GCWGC	2 cut(s)	290, 335
ApoI	RAATTY	1 cut(s)	565
AsiGI	ACCGGT	1 cut(s)	314
AspS9I	GGNCC	2 cut(s)	67, 403
AsuHPI	GGTGA	1 cut(s)	597
AvaI	CYCGRG	2 cut(s)	156, 711
AvaII	GGWCC	2 cut(s)	67, 403
BalI	TGGCCA	1 cut(s)	555
BamHI	GGATCC	1 cut(s)	275
BanII	GRGCYC	1 cut(s)	788
BauI	CACGAG	1 cut(s)	430
BbvI	GCAGC	2 cut(s)	277, 322
BccI	CCATC	2 cut(s)	122, 661
BceAI	ACGGC	1 cut(s)	232
BciVI	GTATCC	1 cut(s)	304
BfaI	CTAG	1 cut(s)	645
BfmI	CTRYAG	1 cut(s)	922
BfuI	GTATCC	1 cut(s)	304
BglII	AGATCT	1 cut(s)	761
BisI	GCNGC	2 cut(s)	291, 336
BlsI	GCNGC	2 cut(s)	292, 337
Bme18I	GGWCC	2 cut(s)	67, 403
BmeT110I	CYCGRG	2 cut(s)	156, 711
BmgT120I	GGNCC	2 cut(s)	67, 403
BmiI	GGNNCC	4 cut(s)	277, 405, 531, 785
BmsI	GCATC	1 cut(s)	359
Bsa29I	ATCGAT	1 cut(s)	751
BsaHI	GRCGYC	1 cut(s)	234
BsaWI	WCCGGW	1 cut(s)	314
Bsc4I	CCNNNNNNNGG	3 cut(s)	200, 201, 979
Bse118I	RCCGGY	1 cut(s)	314
Bse1I	ACTGG	3 cut(s)	220, 303, 667
BseCI	ATCGAT	1 cut(s)	751
BseLI	CCNNNNNNNGG	3 cut(s)	200, 201, 979
BseMII	CTCAG	1 cut(s)	612
BseNI	ACTGG	3 cut(s)	220, 303, 667
BseRI	GAGGAG	1 cut(s)	5
BseXI	GCAGC	2 cut(s)	277, 322
BseYI	CCCAGC	1 cut(s)	779
BsgI	GTGCAG	2 cut(s)	713, 791
Bsh1285I	CGRYCG	1 cut(s)	82
BshFI	GGCC	2 cut(s)	219, 555
BshTI	ACCGGT	1 cut(s)	314
BshVI	ATCGAT	1 cut(s)	751
BsiEI	CGRYCG	1 cut(s)	82
BsiHKCI	CYCGRG	2 cut(s)	156, 711
BsiSI	CCGG	2 cut(s)	65, 315
BslI	CCNNNNNNNGG	3 cut(s)	200, 201, 979
BsnI	GGCC	2 cut(s)	219, 555
BsoBI	CYCGRG	2 cut(s)	156, 711
Bsp1286I	GDGCHC	1 cut(s)	788
BspACI	CCGC	1 cut(s)	384
BspANI	GGCC	2 cut(s)	219, 555
BspCNI	CTCAG	1 cut(s)	611
BspDI	ATCGAT	1 cut(s)	751
BspHI	TCATGA	1 cut(s)	319
BspLI	GGNNCC	4 cut(s)	277, 405, 531, 785
BspPI	GGATC	5 cut(s)	235, 270, 283, 673, 935
BspQI	GCTCTTC	1 cut(s)	140
BsrFI	RCCGGY	1 cut(s)	314
BsrI	ACTGG	3 cut(s)	220, 303, 667
BssAI	RCCGGY	1 cut(s)	314
BssNAI	GTATAC	1 cut(s)	995
BssNI	GRCGYC	1 cut(s)	234
BssSI	CACGAG	1 cut(s)	430
Bst1107I	GTATAC	1 cut(s)	995
Bst2BI	CACGAG	1 cut(s)	430
Bst4CI	ACNGT	4 cut(s)	259, 266, 452, 958
Bst6I	CTCTTC	2 cut(s)	140, 972
BstACI	GRCGYC	1 cut(s)	234
BstC8I	GCNNGC	4 cut(s)	183, 478, 638, 696
BstDEI	CTNAG	3 cut(s)	598, 765, 833
BstMCI	CGRYCG	1 cut(s)	82
BstMWI	GCNNNNNNNGC	1 cut(s)	620
BstSFI	CTRYAG	1 cut(s)	922
BstV1I	GCAGC	2 cut(s)	277, 322
BstX2I	RGATCY	3 cut(s)	275, 665, 761
BstXI	CCANNNNNNTGG	2 cut(s)	286, 896
BstYI	RGATCY	3 cut(s)	275, 665, 761
BstZ17I	GTATAC	1 cut(s)	995
Bsu15I	ATCGAT	1 cut(s)	751
BsuI	GTATCC	1 cut(s)	304
BsuRI	GGCC	2 cut(s)	219, 555
BsuTUI	ATCGAT	1 cut(s)	751
BtgZI	GCGATG	2 cut(s)	495, 639
BtsIMutI	CAGTG	5 cut(s)	255, 457, 467, 660, 751
Cac8I	GCNNGC	4 cut(s)	183, 478, 638, 696
CaiI	CAGNNNCTG	1 cut(s)	823
CciI	TCATGA	1 cut(s)	319
Cfr10I	RCCGGY	1 cut(s)	314
Cfr13I	GGNCC	2 cut(s)	67, 403
ClaI	ATCGAT	1 cut(s)	751
CseI	GACGC	1 cut(s)	242
Csp6I	GTAC	2 cut(s)	223, 536
CspAI	ACCGGT	1 cut(s)	314
CviAII	CATG	2 cut(s)	320, 797
CviQI	GTAC	2 cut(s)	223, 536
DdeI	CTNAG	3 cut(s)	598, 765, 833
EaeI	YGGCCR	2 cut(s)	217, 553
Eam1104I	CTCTTC	2 cut(s)	140, 972
EarI	CTCTTC	2 cut(s)	140, 972
Eco24I	GRGCYC	1 cut(s)	788
Eco47I	GGWCC	2 cut(s)	67, 403
Eco57I	CTGAAG	3 cut(s)	393, 594, 887
Eco88I	CYCGRG	2 cut(s)	156, 711
EcoO109I	RGGNCCY	1 cut(s)	403
EcoT22I	ATGCAT	1 cut(s)	352
EcoT38I	GRGCYC	1 cut(s)	788
FaeI	CATG	2 cut(s)	323, 800
FatI	CATG	2 cut(s)	319, 796
FblI	GTMKAC	1 cut(s)	994
Fnu4HI	GCNGC	2 cut(s)	291, 336
FriOI	GRGCYC	1 cut(s)	788
Fsp4HI	GCNGC	2 cut(s)	291, 336
FspBI	CTAG	1 cut(s)	645
GluI	GCNGC	2 cut(s)	291, 336
GsaI	CCCAGC	1 cut(s)	783
HaeIII	GGCC	2 cut(s)	219, 555
HapII	CCGG	2 cut(s)	65, 315
HgaI	GACGC	1 cut(s)	242
Hin1I	GRCGYC	1 cut(s)	234
Hin1II	CATG	2 cut(s)	323, 800
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HinfI	GANTC	1 cut(s)	87
HpaII	CCGG	2 cut(s)	65, 315
HphI	GGTGA	1 cut(s)	597
Hpy166II	GTNNAC	3 cut(s)	225, 262, 995
Hpy188I	TCNGA	8 cut(s)	355, 365, 448, 499, 571, 825, 867, 1010
Hpy188III	TCNNGA	3 cut(s)	142, 156, 320
Hpy8I	GTNNAC	3 cut(s)	225, 262, 995
Hpy99I	CGWCG	2 cut(s)	107, 191
HpyAV	CCTTC	6 cut(s)	31, 67, 417, 618, 769, 862
HpyCH4III	ACNGT	4 cut(s)	259, 266, 452, 958
HpyCH4V	TGCA	5 cut(s)	350, 440, 476, 694, 772
HpyF10VI	GCNNNNNNNGC	1 cut(s)	620
HpyF3I	CTNAG	3 cut(s)	598, 765, 833
Hsp92I	GRCGYC	1 cut(s)	234
Hsp92II	CATG	2 cut(s)	323, 800
LguI	GCTCTTC	1 cut(s)	140
LmnI	GCTCC	3 cut(s)	15, 535, 783
Lsp1109I	GCAGC	2 cut(s)	277, 322
LweI	GCATC	1 cut(s)	359
MaeI	CTAG	1 cut(s)	645
MaeIII	GTNAC	1 cut(s)	204
MboII	GAAGA	4 cut(s)	127, 130, 660, 989
MflI	RGATCY	3 cut(s)	275, 665, 761
MhlI	GDGCHC	1 cut(s)	788
MlsI	TGGCCA	1 cut(s)	555
MluCI	AATT	4 cut(s)	504, 522, 565, 945
MluNI	TGGCCA	1 cut(s)	555
MlyI	GAGTC	1 cut(s)	96
MmeI	TCCRAC	1 cut(s)	388
Mox20I	TGGCCA	1 cut(s)	555
Mph1103I	ATGCAT	1 cut(s)	352
MscI	TGGCCA	1 cut(s)	555
MseI	TTAA	3 cut(s)	359, 734, 966
Msp20I	TGGCCA	1 cut(s)	555
MspI	CCGG	2 cut(s)	65, 315
MwoI	GCNNNNNNNGC	1 cut(s)	620
NlaIII	CATG	2 cut(s)	323, 800
NlaIV	GGNNCC	4 cut(s)	277, 405, 531, 785
NmeAIII	GCCGAG	1 cut(s)	110
NsiI	ATGCAT	1 cut(s)	352
PaeR7I	CTCGAG	1 cut(s)	156
PagI	TCATGA	1 cut(s)	319
PciSI	GCTCTTC	1 cut(s)	140
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PinAI	ACCGGT	1 cut(s)	314
PkrI	GCNGC	2 cut(s)	292, 337
Ple19I	CGATCG	1 cut(s)	82
PleI	GAGTC	1 cut(s)	95
PpsI	GAGTC	1 cut(s)	95
PpuMI	RGGWCCY	1 cut(s)	403
Psp5II	RGGWCCY	1 cut(s)	403
PspFI	CCCAGC	1 cut(s)	779
PspN4I	GGNNCC	4 cut(s)	277, 405, 531, 785
PspPI	GGNCC	2 cut(s)	67, 403
PspPPI	RGGWCCY	1 cut(s)	403
PstNI	CAGNNNCTG	1 cut(s)	823
PsuI	RGATCY	3 cut(s)	275, 665, 761
PvuI	CGATCG	1 cut(s)	82
RsaI	GTAC	2 cut(s)	224, 537
RsaNI	GTAC	2 cut(s)	223, 536
SapI	GCTCTTC	1 cut(s)	140
SaqAI	TTAA	3 cut(s)	359, 734, 966
SatI	GCNGC	2 cut(s)	291, 336
Sau96I	GGNCC	2 cut(s)	67, 403
SchI	GAGTC	1 cut(s)	96
SduI	GDGCHC	1 cut(s)	788
SfaNI	GCATC	1 cut(s)	359
SfcI	CTRYAG	1 cut(s)	922
Sfr274I	CTCGAG	1 cut(s)	156
SinI	GGWCC	2 cut(s)	67, 403
SlaI	CTCGAG	1 cut(s)	156
SmlI	CTYRAG	1 cut(s)	156
SmoI	CTYRAG	1 cut(s)	156
Sse9I	AATT	4 cut(s)	504, 522, 565, 945
SsiI	CCGC	1 cut(s)	384
SspMI	CTAG	1 cut(s)	645
TaaI	ACNGT	4 cut(s)	259, 266, 452, 958
TaqI	TCGA	6 cut(s)	102, 157, 165, 171, 378, 751
TasI	AATT	4 cut(s)	504, 522, 565, 945
TatI	WGTACW	2 cut(s)	222, 535
Tru1I	TTAA	3 cut(s)	359, 734, 966
Tru9I	TTAA	3 cut(s)	359, 734, 966
TscAI	CASTG	5 cut(s)	262, 457, 474, 667, 751
TseI	GCWGC	2 cut(s)	290, 335
TspDTI	ATGAA	2 cut(s)	478, 924
TspRI	CASTG	5 cut(s)	262, 457, 474, 667, 751
VpaK11BI	GGWCC	2 cut(s)	67, 403
XapI	RAATTY	1 cut(s)	565
XhoI	CTCGAG	1 cut(s)	156
XmiI	GTMKAC	1 cut(s)	994
XspI	CTAG	1 cut(s)	645
Zsp2I	ATGCAT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.