Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0009392

Physical Location & Seq

Genomic Coordinates Reverse (-)

8855269 .. 8863262

Gene Structure 7994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g10010.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGTGAGGCTGAGACAAGGAGGAGGAGGAGGAGGAGGACAGGGTTTAACAATGGGATCAAGGTCAAGGTGCGAAGACTGTGGGAATAAAGCAAAGAAGGAGTGTGTGTACATGAGATGCAGGACTTGTTGTAAGAACAAAGGGTTTCAGTGCCAAACACACGTCAAATCGACTTGGGTTCCTCTCTACAAAAGAAGCCTACTTCATGAGCAGCAGCACAGCTATGATGATTACCACCAGCAACAGCGTCTTGCTGTTGATCAAGGACACGTCTTCATCAACCCTAGTAAGAGGCTAAGACAACACAACCCCTGTTCATCATCTGCAGTCAATCTATCAATGGAAGGGCTGGATCGAGATCATCAAGAAGCTAATAATTTTCCTGCTGAAGTGAATACCATGGCGAAATTTCAGGGTGTTCGAGTGAGCTCCATGGACGATATGGTGGATCTGGATCAGTATGCTTATCAGACAAGTGTGACTATAGGTGGCCATGTATTCAGGGGCATTCTCTATGATCAAGGCCCTGCTGTTCATCAGATGAGTTGTTACACTACTTCAGCTTCTGCAGCAGATCAACCACATCTTCCAACTTCTTTTTCATATCAATTGGTTAATCCATTTAATTCTTCCATGCCTGCAGGGACAAGGCTGGAGCAACATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF702

Protein Analysis

223

Amino Acids

24.84

Weight (kDa)

8.56

Isoelectric Point (pI)

51.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF702	PF05142	22 - 176	6.8e-52	Domain of unknown function (DUF702)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21400 AT2G21400 AT2G21400 AT2G21400
fragaria_vesca	FvH4_2g10010 FvH4_2g10010
malus_domestica	MD05G1058700.v1.1 MD10G1066400.v1.1
prunus_persica	Prupe.8G088300_v2.0.a1
pyrus_communis	pycom05g04960 pycom10g05190
rosa_chinensis	RchiOBHm_Chr6g0266901
rosa_laevigata	RLG00000014061
rosa_multiflora	Rmu_ssc0000486.1_g000003
rosa_roxburghii	Rroxscaffold_7G00201300
rosa_rugosa	Rorug06G0028000 Rorug06G0028100
rosa_samantha	Rh6AG149100 Rh6BG150100 Rh6CG145000 Rh6DG134300
rosa_wichuraiana	Rw6G012900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	64, 360, 456, 462
AcoI	YGGCCR	1 cut(s)	490
AcsI	RAATTY	1 cut(s)	407
AcuI	CTGAAG	2 cut(s)	408, 543
AfaI	GTAC	1 cut(s)	110
AflIII	ACRYGT	2 cut(s)	160, 268
AjiI	CACGTC	2 cut(s)	163, 271
AjuI	GAANNNNNNNTTGG	2 cut(s)	583, 615
AluBI	AGCT	4 cut(s)	222, 371, 429, 563
AluI	AGCT	4 cut(s)	222, 371, 429, 563
Alw21I	GWGCWC	1 cut(s)	431
Alw26I	GTCTC	1 cut(s)	7
AlwI	GGATC	4 cut(s)	64, 360, 456, 462
AlwNI	CAGNNNCTG	1 cut(s)	566
AoxI	GGCC	2 cut(s)	490, 523
ApeKI	GCWGC	3 cut(s)	211, 214, 569
ApoI	RAATTY	1 cut(s)	407
AspS9I	GGNCC	1 cut(s)	524
AsuHPI	GGTGA	1 cut(s)	16
BalI	TGGCCA	1 cut(s)	492
BanII	GRGCYC	1 cut(s)	431
BbsI	GAAGAC	2 cut(s)	81, 265
Bbv12I	GWGCWC	1 cut(s)	431
BbvI	GCAGC	3 cut(s)	223, 226, 581
BclI	TGATCA	2 cut(s)	259, 517
BcoDI	GTCTC	1 cut(s)	7
BfaI	CTAG	1 cut(s)	285
BfmI	CTRYAG	4 cut(s)	324, 483, 567, 639
BisI	GCNGC	3 cut(s)	212, 215, 570
BlsI	GCNGC	3 cut(s)	213, 216, 571
BmgBI	CACGTC	2 cut(s)	163, 271
BmgT120I	GGNCC	1 cut(s)	524
BmiI	GGNNCC	1 cut(s)	180
BmsI	GCATC	1 cut(s)	107
BpiI	GAAGAC	2 cut(s)	81, 265
BsaBI	GATNNNNATC	2 cut(s)	357, 453
BsaJI	CCNNGG	2 cut(s)	399, 432
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bse8I	GATNNNNATC	2 cut(s)	357, 453
BseDI	CCNNGG	2 cut(s)	399, 432
BseJI	GATNNNNATC	2 cut(s)	357, 453
BseRI	GAGGAG	5 cut(s)	36, 39, 42, 45, 48
BseXI	GCAGC	3 cut(s)	223, 226, 581
BshFI	GGCC	2 cut(s)	492, 525
BsiHKAI	GWGCWC	1 cut(s)	431
BslFI	GGGAC	1 cut(s)	658
BsmAI	GTCTC	1 cut(s)	7
BsmFI	GGGAC	1 cut(s)	658
BsmI	GAATGC	1 cut(s)	507
BsnI	GGCC	2 cut(s)	492, 525
Bsp1286I	GDGCHC	1 cut(s)	431
Bsp1407I	TGTACA	1 cut(s)	108
Bsp143I	GATC	8 cut(s)	56, 259, 352, 358, 448, 454, 517, 574
Bsp19I	CCATGG	2 cut(s)	399, 432
BspANI	GGCC	2 cut(s)	492, 525
BspHI	TCATGA	1 cut(s)	205
BspLI	GGNNCC	1 cut(s)	180
BspMAI	CTGCAG	3 cut(s)	328, 571, 643
BspPI	GGATC	4 cut(s)	64, 360, 456, 462
BsrGI	TGTACA	1 cut(s)	108
BssECI	CCNNGG	2 cut(s)	399, 432
BssMI	GATC	8 cut(s)	56, 259, 352, 358, 448, 454, 517, 574
BssT1I	CCWWGG	2 cut(s)	399, 432
Bst4CI	ACNGT	1 cut(s)	80
BstAUI	TGTACA	1 cut(s)	108
BstC8I	GCNNGC	1 cut(s)	639
BstDEI	CTNAG	2 cut(s)	11, 296
BstDSI	CCRYGG	2 cut(s)	399, 432
BstKTI	GATC	8 cut(s)	59, 262, 355, 361, 451, 457, 520, 577
BstMAI	GTCTC	1 cut(s)	7
BstMBI	GATC	8 cut(s)	56, 259, 352, 358, 448, 454, 517, 574
BstMWI	GCNNNNNNNGC	1 cut(s)	569
BstSFI	CTRYAG	4 cut(s)	324, 483, 567, 639
BstV1I	GCAGC	3 cut(s)	223, 226, 581
BstV2I	GAAGAC	2 cut(s)	81, 265
BstX2I	RGATCY	1 cut(s)	448
BstYI	RGATCY	1 cut(s)	448
BsuRI	GGCC	2 cut(s)	492, 525
BtgI	CCRYGG	2 cut(s)	399, 432
BtrI	CACGTC	2 cut(s)	163, 271
BtsIMutI	CAGTG	1 cut(s)	155
Cac8I	GCNNGC	1 cut(s)	639
CaiI	CAGNNNCTG	1 cut(s)	566
CciI	TCATGA	1 cut(s)	205
Cfr13I	GGNCC	1 cut(s)	524
CseI	GACGC	1 cut(s)	236
Csp6I	GTAC	1 cut(s)	109
CviAII	CATG	6 cut(s)	112, 206, 400, 433, 494, 634
CviQI	GTAC	1 cut(s)	109
DdeI	CTNAG	2 cut(s)	11, 296
DpnI	GATC	8 cut(s)	58, 261, 354, 360, 450, 456, 519, 576
DpnII	GATC	8 cut(s)	56, 259, 352, 358, 448, 454, 517, 574
EaeI	YGGCCR	1 cut(s)	490
Ecl136II	GAGCTC	1 cut(s)	429
Eco130I	CCWWGG	2 cut(s)	399, 432
Eco24I	GRGCYC	1 cut(s)	431
Eco53kI	GAGCTC	1 cut(s)	429
Eco57I	CTGAAG	2 cut(s)	408, 543
EcoICRI	GAGCTC	1 cut(s)	429
EcoO109I	RGGNCCY	1 cut(s)	524
EcoT14I	CCWWGG	2 cut(s)	399, 432
EcoT38I	GRGCYC	1 cut(s)	431
ErhI	CCWWGG	2 cut(s)	399, 432
FaeI	CATG	6 cut(s)	115, 209, 403, 436, 497, 637
FaqI	GGGAC	1 cut(s)	658
FatI	CATG	6 cut(s)	111, 205, 399, 432, 493, 633
FbaI	TGATCA	2 cut(s)	259, 517
Fnu4HI	GCNGC	3 cut(s)	212, 215, 570
FriOI	GRGCYC	1 cut(s)	431
Fsp4HI	GCNGC	3 cut(s)	212, 215, 570
FspBI	CTAG	1 cut(s)	285
GluI	GCNGC	3 cut(s)	212, 215, 570
HaeIII	GGCC	2 cut(s)	492, 525
HgaI	GACGC	1 cut(s)	236
Hin1II	CATG	6 cut(s)	115, 209, 403, 436, 497, 637
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188I	TCNGA	2 cut(s)	471, 540
Hpy188III	TCNNGA	4 cut(s)	206, 356, 365, 452
Hpy8I	GTNNAC	1 cut(s)	109
HpyAV	CCTTC	2 cut(s)	91, 338
HpyCH4III	ACNGT	1 cut(s)	80
HpyCH4IV	ACGT	2 cut(s)	162, 270
HpyCH4V	TGCA	4 cut(s)	120, 326, 569, 641
HpyF10VI	GCNNNNNNNGC	1 cut(s)	569
HpyF3I	CTNAG	2 cut(s)	11, 296
HpySE526I	ACGT	2 cut(s)	162, 270
Hsp92II	CATG	6 cut(s)	115, 209, 403, 436, 497, 637
Ksp22I	TGATCA	2 cut(s)	259, 517
Kzo9I	GATC	8 cut(s)	56, 259, 352, 358, 448, 454, 517, 574
LmnI	GCTCC	2 cut(s)	434, 655
Lsp1109I	GCAGC	3 cut(s)	223, 226, 581
LweI	GCATC	1 cut(s)	107
MaeI	CTAG	1 cut(s)	285
MaeII	ACGT	2 cut(s)	162, 270
MaeIII	GTNAC	2 cut(s)	478, 548
MalI	GATC	8 cut(s)	58, 261, 354, 360, 450, 456, 519, 576
MboI	GATC	8 cut(s)	56, 259, 352, 358, 448, 454, 517, 574
MboII	GAAGA	4 cut(s)	86, 265, 578, 621
MfeI	CAATTG	1 cut(s)	608
MflI	RGATCY	1 cut(s)	448
MhlI	GDGCHC	1 cut(s)	431
MlsI	TGGCCA	1 cut(s)	492
MluCI	AATT	4 cut(s)	376, 407, 608, 625
MluNI	TGGCCA	1 cut(s)	492
MmeI	TCCRAC	1 cut(s)	614
MnlI	CCTC	8 cut(s)	14, 17, 20, 23, 26, 29, 192, 285
Mox20I	TGGCCA	1 cut(s)	492
MscI	TGGCCA	1 cut(s)	492
MseI	TTAA	3 cut(s)	47, 615, 624
MslI	CAYNNNNRTG	1 cut(s)	222
Msp20I	TGGCCA	1 cut(s)	492
MunI	CAATTG	1 cut(s)	608
Mva1269I	GAATGC	1 cut(s)	507
MwoI	GCNNNNNNNGC	1 cut(s)	569
NcoI	CCATGG	2 cut(s)	399, 432
NdeII	GATC	8 cut(s)	56, 259, 352, 358, 448, 454, 517, 574
NlaIII	CATG	6 cut(s)	115, 209, 403, 436, 497, 637
NlaIV	GGNNCC	1 cut(s)	180
NmuCI	GTSAC	1 cut(s)	478
PagI	TCATGA	1 cut(s)	205
PctI	GAATGC	1 cut(s)	507
PkrI	GCNGC	3 cut(s)	213, 216, 571
Psp124BI	GAGCTC	1 cut(s)	431
PspN4I	GGNNCC	1 cut(s)	180
PspPI	GGNCC	1 cut(s)	524
PstI	CTGCAG	3 cut(s)	328, 571, 643
PstNI	CAGNNNCTG	1 cut(s)	566
PsuI	RGATCY	1 cut(s)	448
RsaI	GTAC	1 cut(s)	110
RsaNI	GTAC	1 cut(s)	109
RseI	CAYNNNNRTG	1 cut(s)	222
SacI	GAGCTC	1 cut(s)	431
SaqAI	TTAA	3 cut(s)	47, 615, 624
SatI	GCNGC	3 cut(s)	212, 215, 570
Sau3AI	GATC	8 cut(s)	56, 259, 352, 358, 448, 454, 517, 574
Sau96I	GGNCC	1 cut(s)	524
SbfI	CCTGCAGG	1 cut(s)	643
SdaI	CCTGCAGG	1 cut(s)	643
SduI	GDGCHC	1 cut(s)	431
SetI	ASST	9 cut(s)	65, 71, 165, 224, 273, 373, 431, 490, 565
SfaNI	GCATC	1 cut(s)	107
SfcI	CTRYAG	4 cut(s)	324, 483, 567, 639
SmiMI	CAYNNNNRTG	1 cut(s)	222
Sse8387I	CCTGCAGG	1 cut(s)	643
Sse9I	AATT	4 cut(s)	376, 407, 608, 625
SspMI	CTAG	1 cut(s)	285
SstI	GAGCTC	1 cut(s)	431
StyI	CCWWGG	2 cut(s)	399, 432
TaaI	ACNGT	1 cut(s)	80
TaiI	ACGT	2 cut(s)	165, 273
TaqI	TCGA	3 cut(s)	170, 355, 421
TasI	AATT	4 cut(s)	376, 407, 608, 625
TatI	WGTACW	1 cut(s)	108
Tru1I	TTAA	3 cut(s)	47, 615, 624
Tru9I	TTAA	3 cut(s)	47, 615, 624
TscAI	CASTG	1 cut(s)	155
TseFI	GTSAC	1 cut(s)	478
TseI	GCWGC	3 cut(s)	211, 214, 569
Tsp45I	GTSAC	1 cut(s)	478
TspDTI	ATGAA	5 cut(s)	194, 265, 306, 524, 591
TspRI	CASTG	1 cut(s)	155
XapI	RAATTY	1 cut(s)	407
XcmI	CCANNNNNNNNNTGG	1 cut(s)	439
XspI	CTAG	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.