Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0009392

Physical Location & Seq

Genomic Coordinates Reverse (-)

19196573 .. 19197867

Gene Structure 1295 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG134300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGGATCAAGGTCAAGGTGCGAAGACTGTGGGAATAAAGCAAAGAAGGAGTGTGTGTACATGAGATGCAGGACTTGTTGTAAGAACAAAGGGTTTCGGTGCCAAACTCACGTCAAATCGACTTGGGTTCCTCTCTACAAAAGAAGCCTACTCCATGAGCAGCAGCACCCTAATGATGATCACCACAGGCAACAGCAACTTGCTATTGATCAAGGACACATCTTCATCAACCCTGATAAGAAGCTAAGACAACACAACCCCTCTTCATCATGTGCAGGGCTAGATCGAGATCATCAAGAGGCTAATTTTCCGGCTGAAGTGACTACCATGGCCAAATTTCAGGGTATTCGAGTGAGCTCCATGGACGATATGGTGGATCTGGATCAGCATGCTTATCAGACAAGCGTGATTATAGGTGGCCATGTATTCAGGGGCATTCTCTATAATCAAGGCCCTGCTGTTCATCAGATGAACTATTACACTTCAGCCTCTGCTGCAGATCAACCACATCATCCTCCTTCATATCAATTGATTAATCCATTTAACGCTTTCATGCCTGCAGATATGTTTAGCGTTAACCGCATCTTCAAGGTTAGTTTCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF702

Protein Analysis

201

Amino Acids

23.04

Weight (kDa)

8.91

Isoelectric Point (pI)

42.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF702	PF05142	5 - 152	6.8e-49	Domain of unknown function (DUF702)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21400 AT2G21400 AT2G21400 AT2G21400
fragaria_vesca	FvH4_2g10010 FvH4_2g10010
malus_domestica	MD05G1058700.v1.1 MD10G1066400.v1.1
prunus_persica	Prupe.8G088300_v2.0.a1
pyrus_communis	pycom05g04960 pycom10g05190
rosa_chinensis	RchiOBHm_Chr6g0266901
rosa_laevigata	RLG00000014061
rosa_multiflora	Rmu_ssc0000486.1_g000003
rosa_roxburghii	Rroxscaffold_7G00201300
rosa_rugosa	Rorug06G0028000 Rorug06G0028100
rosa_samantha	Rh6AG149100 Rh6BG150100 Rh6CG145000 Rh6DG134300
rosa_wichuraiana	Rw6G012900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	99
AciI	CCGC	1 cut(s)	580
AclWI	GGATC	3 cut(s)	13, 384, 390
AcoI	YGGCCR	2 cut(s)	330, 418
AcsI	RAATTY	1 cut(s)	335
AcuI	CTGAAG	2 cut(s)	336, 468
AfaI	GTAC	1 cut(s)	59
AgsI	TTSAA	2 cut(s)	589, 601
AjiI	CACGTC	1 cut(s)	112
AluBI	AGCT	2 cut(s)	244, 357
AluI	AGCT	2 cut(s)	244, 357
Alw21I	GWGCWC	1 cut(s)	359
AlwI	GGATC	3 cut(s)	13, 384, 390
AlwNI	CAGNNNCTG	1 cut(s)	491
AoxI	GGCC	3 cut(s)	330, 418, 451
ApeKI	GCWGC	3 cut(s)	160, 163, 494
ApoI	RAATTY	1 cut(s)	335
AseI	ATTAAT	1 cut(s)	534
AspS9I	GGNCC	1 cut(s)	452
AsuHPI	GGTGA	1 cut(s)	173
BalI	TGGCCA	2 cut(s)	332, 420
BanI	GGYRCC	1 cut(s)	99
BanII	GRGCYC	1 cut(s)	359
BbsI	GAAGAC	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	359
BbvI	GCAGC	3 cut(s)	172, 175, 481
BclI	TGATCA	2 cut(s)	178, 208
BfaI	CTAG	1 cut(s)	281
BfmI	CTRYAG	2 cut(s)	495, 558
BisI	GCNGC	3 cut(s)	161, 164, 495
BlsI	GCNGC	3 cut(s)	162, 165, 496
BmgBI	CACGTC	1 cut(s)	112
BmgT120I	GGNCC	1 cut(s)	452
BmiI	GGNNCC	2 cut(s)	101, 129
BmsI	GCATC	2 cut(s)	56, 591
BpiI	GAAGAC	1 cut(s)	30
BsaBI	GATNNNNATC	2 cut(s)	288, 381
BsaJI	CCNNGG	2 cut(s)	327, 360
BsaXI	ACNNNNNCTCC	2 cut(s)	41, 71
Bse8I	GATNNNNATC	2 cut(s)	288, 381
BseDI	CCNNGG	2 cut(s)	327, 360
BseGI	GGATG	1 cut(s)	511
BseJI	GATNNNNATC	2 cut(s)	288, 381
BseXI	GCAGC	3 cut(s)	172, 175, 481
BsgI	GTGCAG	1 cut(s)	294
BshFI	GGCC	3 cut(s)	332, 420, 453
BshNI	GGYRCC	1 cut(s)	99
BsiHKAI	GWGCWC	1 cut(s)	359
BsiSI	CCGG	1 cut(s)	311
BsmI	GAATGC	1 cut(s)	435
BsnI	GGCC	3 cut(s)	332, 420, 453
Bsp1286I	GDGCHC	1 cut(s)	359
Bsp1407I	TGTACA	1 cut(s)	57
Bsp143I	GATC	8 cut(s)	5, 178, 208, 283, 289, 376, 382, 499
Bsp19I	CCATGG	2 cut(s)	327, 360
BspACI	CCGC	1 cut(s)	580
BspANI	GGCC	3 cut(s)	332, 420, 453
BspLI	GGNNCC	2 cut(s)	101, 129
BspMAI	CTGCAG	2 cut(s)	499, 562
BspPI	GGATC	3 cut(s)	13, 384, 390
BspT107I	GGYRCC	1 cut(s)	99
BsrGI	TGTACA	1 cut(s)	57
BssECI	CCNNGG	2 cut(s)	327, 360
BssMI	GATC	8 cut(s)	5, 178, 208, 283, 289, 376, 382, 499
BssT1I	CCWWGG	2 cut(s)	327, 360
Bst4CI	ACNGT	1 cut(s)	29
Bst6I	CTCTTC	1 cut(s)	268
BstAUI	TGTACA	1 cut(s)	57
BstC8I	GCNNGC	2 cut(s)	390, 558
BstDEI	CTNAG	1 cut(s)	245
BstDSI	CCRYGG	2 cut(s)	327, 360
BstF5I	GGATG	1 cut(s)	511
BstKTI	GATC	8 cut(s)	8, 181, 211, 286, 292, 379, 385, 502
BstMBI	GATC	8 cut(s)	5, 178, 208, 283, 289, 376, 382, 499
BstMWI	GCNNNNNNNGC	2 cut(s)	494, 579
BstNSI	RCATGY	1 cut(s)	392
BstSFI	CTRYAG	2 cut(s)	495, 558
BstV1I	GCAGC	3 cut(s)	172, 175, 481
BstV2I	GAAGAC	1 cut(s)	30
BstX2I	RGATCY	1 cut(s)	376
BstYI	RGATCY	1 cut(s)	376
BsuRI	GGCC	3 cut(s)	332, 420, 453
BtgI	CCRYGG	2 cut(s)	327, 360
BtrI	CACGTC	1 cut(s)	112
BtsCI	GGATG	1 cut(s)	511
Cac8I	GCNNGC	2 cut(s)	390, 558
CaiI	CAGNNNCTG	1 cut(s)	491
Cfr13I	GGNCC	1 cut(s)	452
Csp6I	GTAC	1 cut(s)	58
CviAII	CATG	8 cut(s)	61, 155, 270, 328, 361, 389, 422, 553
CviQI	GTAC	1 cut(s)	58
DdeI	CTNAG	1 cut(s)	245
DpnI	GATC	8 cut(s)	7, 180, 210, 285, 291, 378, 384, 501
DpnII	GATC	8 cut(s)	5, 178, 208, 283, 289, 376, 382, 499
EaeI	YGGCCR	2 cut(s)	330, 418
Eam1104I	CTCTTC	1 cut(s)	268
EarI	CTCTTC	1 cut(s)	268
Ecl136II	GAGCTC	1 cut(s)	357
Eco130I	CCWWGG	2 cut(s)	327, 360
Eco24I	GRGCYC	1 cut(s)	359
Eco53kI	GAGCTC	1 cut(s)	357
Eco57I	CTGAAG	2 cut(s)	336, 468
EcoICRI	GAGCTC	1 cut(s)	357
EcoO109I	RGGNCCY	1 cut(s)	452
EcoT14I	CCWWGG	2 cut(s)	327, 360
EcoT38I	GRGCYC	1 cut(s)	359
ErhI	CCWWGG	2 cut(s)	327, 360
FaeI	CATG	8 cut(s)	64, 158, 273, 331, 364, 392, 425, 556
FatI	CATG	8 cut(s)	60, 154, 269, 327, 360, 388, 421, 552
FbaI	TGATCA	2 cut(s)	178, 208
Fnu4HI	GCNGC	3 cut(s)	161, 164, 495
FokI	GGATG	1 cut(s)	498
FriOI	GRGCYC	1 cut(s)	359
Fsp4HI	GCNGC	3 cut(s)	161, 164, 495
FspBI	CTAG	1 cut(s)	281
GluI	GCNGC	3 cut(s)	161, 164, 495
HaeIII	GGCC	3 cut(s)	332, 420, 453
HapII	CCGG	1 cut(s)	311
Hin1II	CATG	8 cut(s)	64, 158, 273, 331, 364, 392, 425, 556
HincII	GTYRAC	1 cut(s)	577
HindII	GTYRAC	1 cut(s)	577
HpaI	GTTAAC	1 cut(s)	577
HpaII	CCGG	1 cut(s)	311
HphI	GGTGA	1 cut(s)	173
Hpy166II	GTNNAC	2 cut(s)	58, 577
Hpy188I	TCNGA	2 cut(s)	399, 468
Hpy188III	TCNNGA	3 cut(s)	287, 296, 380
Hpy8I	GTNNAC	2 cut(s)	58, 577
HpyAV	CCTTC	2 cut(s)	40, 528
HpyCH4III	ACNGT	1 cut(s)	29
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	4 cut(s)	69, 275, 497, 560
HpyF10VI	GCNNNNNNNGC	2 cut(s)	494, 579
HpyF3I	CTNAG	1 cut(s)	245
HpySE526I	ACGT	1 cut(s)	111
Hsp92II	CATG	8 cut(s)	64, 158, 273, 331, 364, 392, 425, 556
Ksp22I	TGATCA	2 cut(s)	178, 208
KspAI	GTTAAC	1 cut(s)	577
Kzo9I	GATC	8 cut(s)	5, 178, 208, 283, 289, 376, 382, 499
LmnI	GCTCC	1 cut(s)	362
Lsp1109I	GCAGC	3 cut(s)	172, 175, 481
LweI	GCATC	2 cut(s)	56, 591
MaeI	CTAG	1 cut(s)	281
MaeII	ACGT	1 cut(s)	111
MaeIII	GTNAC	1 cut(s)	319
MalI	GATC	8 cut(s)	7, 180, 210, 285, 291, 378, 384, 501
MboI	GATC	8 cut(s)	5, 178, 208, 283, 289, 376, 382, 499
MboII	GAAGA	4 cut(s)	35, 214, 255, 577
MfeI	CAATTG	1 cut(s)	527
MflI	RGATCY	1 cut(s)	376
MhlI	GDGCHC	1 cut(s)	359
MlsI	TGGCCA	2 cut(s)	332, 420
MluCI	AATT	3 cut(s)	304, 335, 527
MluNI	TGGCCA	2 cut(s)	332, 420
MnlI	CCTC	5 cut(s)	141, 271, 292, 499, 525
Mox20I	TGGCCA	2 cut(s)	332, 420
MscI	TGGCCA	2 cut(s)	332, 420
MseI	TTAA	3 cut(s)	534, 543, 576
MslI	CAYNNNNRTG	1 cut(s)	171
Msp20I	TGGCCA	2 cut(s)	332, 420
MspI	CCGG	1 cut(s)	311
MunI	CAATTG	1 cut(s)	527
Mva1269I	GAATGC	1 cut(s)	435
MwoI	GCNNNNNNNGC	2 cut(s)	494, 579
NcoI	CCATGG	2 cut(s)	327, 360
NdeII	GATC	8 cut(s)	5, 178, 208, 283, 289, 376, 382, 499
NlaIII	CATG	8 cut(s)	64, 158, 273, 331, 364, 392, 425, 556
NlaIV	GGNNCC	2 cut(s)	101, 129
NmuCI	GTSAC	1 cut(s)	319
NspI	RCATGY	1 cut(s)	392
PaeI	GCATGC	1 cut(s)	392
PctI	GAATGC	1 cut(s)	435
PkrI	GCNGC	3 cut(s)	162, 165, 496
PshBI	ATTAAT	1 cut(s)	534
Psp124BI	GAGCTC	1 cut(s)	359
PspN4I	GGNNCC	2 cut(s)	101, 129
PspPI	GGNCC	1 cut(s)	452
PstI	CTGCAG	2 cut(s)	499, 562
PstNI	CAGNNNCTG	1 cut(s)	491
PsuI	RGATCY	1 cut(s)	376
RsaI	GTAC	1 cut(s)	59
RsaNI	GTAC	1 cut(s)	58
RseI	CAYNNNNRTG	1 cut(s)	171
SacI	GAGCTC	1 cut(s)	359
SaqAI	TTAA	3 cut(s)	534, 543, 576
SatI	GCNGC	3 cut(s)	161, 164, 495
Sau3AI	GATC	8 cut(s)	5, 178, 208, 283, 289, 376, 382, 499
Sau96I	GGNCC	1 cut(s)	452
SduI	GDGCHC	1 cut(s)	359
SetI	ASST	7 cut(s)	14, 20, 114, 246, 359, 418, 594
SfaNI	GCATC	2 cut(s)	56, 591
SfcI	CTRYAG	2 cut(s)	495, 558
SmiMI	CAYNNNNRTG	1 cut(s)	171
SphI	GCATGC	1 cut(s)	392
Sse9I	AATT	3 cut(s)	304, 335, 527
SsiI	CCGC	1 cut(s)	580
SspMI	CTAG	1 cut(s)	281
SstI	GAGCTC	1 cut(s)	359
StyI	CCWWGG	2 cut(s)	327, 360
TaaI	ACNGT	1 cut(s)	29
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	3 cut(s)	119, 286, 349
TasI	AATT	3 cut(s)	304, 335, 527
TatI	WGTACW	1 cut(s)	57
Tru1I	TTAA	3 cut(s)	534, 543, 576
Tru9I	TTAA	3 cut(s)	534, 543, 576
TseFI	GTSAC	1 cut(s)	319
TseI	GCWGC	3 cut(s)	160, 163, 494
Tsp45I	GTSAC	1 cut(s)	319
TspDTI	ATGAA	6 cut(s)	214, 255, 452, 485, 510, 541
VspI	ATTAAT	1 cut(s)	534
XapI	RAATTY	1 cut(s)	335
XceI	RCATGY	1 cut(s)	392
XcmI	CCANNNNNNNNNTGG	1 cut(s)	367
XspI	CTAG	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.