Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009392

Physical Location & Seq

Genomic Coordinates Forward (+)

3356678 .. 3357100

Gene Structure 423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0028100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGAAGAGAAAGGTGCTTAATAAAAAGGAGAAGGCTGGCCAGACTCAGAATTGGTATGAGAGGTCCGTTGATTGCATAAACGATAAAGAACAATTAAACTTCTTCAAGAATGTGTTGAGGGAGCTAGGCGATATGGTGGCCCAACATTCTGAAATGCTGCGGCAAAAGCAGGTTGGACTAATGCAGCAAAACGCTGGAATGGTGCAGCAAGCCGAGCTGATGCAGCAAAACACTACTATCGGGGCTATTAGGGACTTCATGCAACCGAGGGCAGCTGCTGCTCGGCCGTTTTATGGGGGGAATTCTTCGAGCAGCAATGTGATGAATCCCTATGGTCCTATCACTCCTATGCCTTCTTCTTCTCCTCCTCCTCCTCCTGCCGAACCCTGGAATCCAAATCTTGAAAGTCGCCAATTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF702

Protein Analysis

140

Amino Acids

15.87

Weight (kDa)

9.41

Isoelectric Point (pI)

50.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21400 AT2G21400 AT2G21400 AT2G21400
fragaria_vesca	FvH4_2g10010 FvH4_2g10010
malus_domestica	MD05G1058700.v1.1 MD10G1066400.v1.1
prunus_persica	Prupe.8G088300_v2.0.a1
pyrus_communis	pycom05g04960 pycom10g05190
rosa_chinensis	RchiOBHm_Chr6g0266901
rosa_laevigata	RLG00000014061
rosa_multiflora	Rmu_ssc0000486.1_g000003
rosa_roxburghii	Rroxscaffold_7G00201300
rosa_rugosa	Rorug06G0028000 Rorug06G0028100
rosa_samantha	Rh6AG149100 Rh6BG150100 Rh6CG145000 Rh6DG134300
rosa_wichuraiana	Rw6G012900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	160
AciI	CCGC	1 cut(s)	160
AcoI	YGGCCR	2 cut(s)	37, 284
AcsI	RAATTY	1 cut(s)	301
AfiI	CCNNNNNNNGG	2 cut(s)	293, 387
AgsI	TTSAA	2 cut(s)	106, 404
AjnI	CCWGG	1 cut(s)	386
AluBI	AGCT	3 cut(s)	124, 217, 275
AluI	AGCT	3 cut(s)	124, 217, 275
AlwNI	CAGNNNCTG	1 cut(s)	278
AoxI	GGCC	3 cut(s)	37, 138, 284
ApeKI	GCWGC	8 cut(s)	157, 184, 205, 223, 272, 275, 278, 312
ApoI	RAATTY	1 cut(s)	301
AspS9I	GGNCC	3 cut(s)	63, 139, 335
AvaII	GGWCC	2 cut(s)	63, 335
BalI	TGGCCA	1 cut(s)	39
BbvI	GCAGC	8 cut(s)	144, 196, 217, 235, 262, 265, 284, 324
BceAI	ACGGC	1 cut(s)	271
BciT130I	CCWGG	1 cut(s)	388
BfaI	CTAG	1 cut(s)	125
BfuAI	ACCTGC	1 cut(s)	160
BisI	GCNGC	9 cut(s)	158, 161, 185, 206, 224, 273, 276, 279, 313
BlsI	GCNGC	9 cut(s)	159, 162, 186, 207, 225, 274, 277, 280, 314
Bme1390I	CCNGG	1 cut(s)	388
Bme18I	GGWCC	2 cut(s)	63, 335
BmgT120I	GGNCC	3 cut(s)	63, 139, 335
BmrFI	CCNGG	1 cut(s)	388
BmsI	GCATC	1 cut(s)	210
BsaJI	CCNNGG	2 cut(s)	266, 386
Bsc4I	CCNNNNNNNGG	2 cut(s)	293, 387
Bse3DI	GCAATG	1 cut(s)	322
BseBI	CCWGG	1 cut(s)	388
BseDI	CCNNGG	2 cut(s)	266, 386
BseLI	CCNNNNNNNGG	2 cut(s)	293, 387
BseMI	GCAATG	1 cut(s)	322
BseMII	CTCAG	1 cut(s)	59
BseRI	GAGGAG	4 cut(s)	354, 357, 360, 363
BseX3I	CGGCCG	1 cut(s)	284
BseXI	GCAGC	8 cut(s)	144, 196, 217, 235, 262, 265, 284, 324
BsgI	GTGCAG	1 cut(s)	224
Bsh1285I	CGRYCG	1 cut(s)	287
BshFI	GGCC	3 cut(s)	39, 140, 286
BsiEI	CGRYCG	1 cut(s)	287
BslFI	GGGAC	1 cut(s)	266
BslI	CCNNNNNNNGG	2 cut(s)	293, 387
BsmFI	GGGAC	1 cut(s)	266
BsnI	GGCC	3 cut(s)	39, 140, 286
BspACI	CCGC	1 cut(s)	160
BspANI	GGCC	3 cut(s)	39, 140, 286
BspCNI	CTCAG	1 cut(s)	58
BspMI	ACCTGC	1 cut(s)	160
BsrDI	GCAATG	1 cut(s)	322
BssECI	CCNNGG	2 cut(s)	266, 386
Bst2UI	CCWGG	1 cut(s)	388
BstAPI	GCANNNNNTGC	1 cut(s)	278
BstC8I	GCNNGC	2 cut(s)	37, 210
BstDEI	CTNAG	1 cut(s)	45
BstMCI	CGRYCG	1 cut(s)	287
BstMWI	GCNNNNNNNGC	4 cut(s)	166, 214, 223, 278
BstNI	CCWGG	1 cut(s)	388
BstSCI	CCNGG	1 cut(s)	386
BstV1I	GCAGC	8 cut(s)	144, 196, 217, 235, 262, 265, 284, 324
BstZI	CGGCCG	1 cut(s)	284
BsuRI	GGCC	3 cut(s)	39, 140, 286
BveI	ACCTGC	1 cut(s)	160
Cac8I	GCNNGC	2 cut(s)	37, 210
CaiI	CAGNNNCTG	1 cut(s)	278
Cfr13I	GGNCC	3 cut(s)	63, 139, 335
CviAII	CATG	1 cut(s)	259
CviJI	RGCY	9 cut(s)	35, 39, 124, 140, 212, 217, 245, 275, 286
CviKI_1	RGCY	9 cut(s)	35, 39, 124, 140, 212, 217, 245, 275, 286
DdeI	CTNAG	1 cut(s)	45
EaeI	YGGCCR	2 cut(s)	37, 284
EagI	CGGCCG	1 cut(s)	284
EclXI	CGGCCG	1 cut(s)	284
Eco47I	GGWCC	2 cut(s)	63, 335
Eco52I	CGGCCG	1 cut(s)	284
EcoRI	GAATTC	1 cut(s)	301
EcoRII	CCWGG	1 cut(s)	386
FaeI	CATG	1 cut(s)	262
FaiI	YATR	7 cut(s)	57, 77, 134, 260, 294, 333, 350
FaqI	GGGAC	1 cut(s)	266
FatI	CATG	1 cut(s)	258
Fnu4HI	GCNGC	9 cut(s)	158, 161, 185, 206, 224, 273, 276, 279, 313
Fsp4HI	GCNGC	9 cut(s)	158, 161, 185, 206, 224, 273, 276, 279, 313
FspBI	CTAG	1 cut(s)	125
GluI	GCNGC	9 cut(s)	158, 161, 185, 206, 224, 273, 276, 279, 313
HaeIII	GGCC	3 cut(s)	39, 140, 286
Hin1II	CATG	1 cut(s)	262
HinfI	GANTC	3 cut(s)	43, 325, 391
Hpy188I	TCNGA	3 cut(s)	48, 151, 422
Hpy188III	TCNNGA	2 cut(s)	106, 401
HpyAV	CCTTC	2 cut(s)	25, 363
HpyCH4V	TGCA	5 cut(s)	75, 184, 205, 223, 262
HpyF10VI	GCNNNNNNNGC	4 cut(s)	166, 214, 223, 278
HpyF3I	CTNAG	1 cut(s)	45
Hsp92II	CATG	1 cut(s)	262
LmnI	GCTCC	1 cut(s)	121
LpnPI	CCDG	7 cut(s)	21, 53, 155, 180, 373, 390, 400
Lsp1109I	GCAGC	8 cut(s)	144, 196, 217, 235, 262, 265, 284, 324
LweI	GCATC	1 cut(s)	210
MaeI	CTAG	1 cut(s)	125
MboII	GAAGA	5 cut(s)	16, 94, 297, 348, 351
MlsI	TGGCCA	1 cut(s)	39
MluCI	AATT	4 cut(s)	49, 92, 301, 413
MluNI	TGGCCA	1 cut(s)	39
MlyI	GAGTC	1 cut(s)	37
MmeI	TCCRAC	1 cut(s)	154
MnlI	CCTC	7 cut(s)	54, 111, 261, 375, 378, 381, 384
Mox20I	TGGCCA	1 cut(s)	39
MscI	TGGCCA	1 cut(s)	39
MseI	TTAA	2 cut(s)	18, 95
MslI	CAYNNNNRTG	1 cut(s)	347
Msp20I	TGGCCA	1 cut(s)	39
MspA1I	CMGCKG	1 cut(s)	275
MspR9I	CCNGG	1 cut(s)	388
MvaI	CCWGG	1 cut(s)	388
MwoI	GCNNNNNNNGC	4 cut(s)	166, 214, 223, 278
NlaIII	CATG	1 cut(s)	262
NmeAIII	GCCGAG	2 cut(s)	238, 262
PfeI	GAWTC	2 cut(s)	325, 391
PkrI	GCNGC	9 cut(s)	159, 162, 186, 207, 225, 274, 277, 280, 314
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
Psp6I	CCWGG	1 cut(s)	386
PspGI	CCWGG	1 cut(s)	386
PspPI	GGNCC	3 cut(s)	63, 139, 335
PstNI	CAGNNNCTG	1 cut(s)	278
PvuII	CAGCTG	1 cut(s)	275
RseI	CAYNNNNRTG	1 cut(s)	347
SaqAI	TTAA	2 cut(s)	18, 95
SatI	GCNGC	9 cut(s)	158, 161, 185, 206, 224, 273, 276, 279, 313
Sau96I	GGNCC	3 cut(s)	63, 139, 335
SchI	GAGTC	1 cut(s)	37
ScrFI	CCNGG	1 cut(s)	388
SetI	ASST	6 cut(s)	15, 65, 126, 174, 219, 277
SfaNI	GCATC	1 cut(s)	210
SinI	GGWCC	2 cut(s)	63, 335
SmiMI	CAYNNNNRTG	1 cut(s)	347
Sse9I	AATT	4 cut(s)	49, 92, 301, 413
SsiI	CCGC	1 cut(s)	160
SspMI	CTAG	1 cut(s)	125
StyD4I	CCNGG	1 cut(s)	386
TaqI	TCGA	1 cut(s)	308
TasI	AATT	4 cut(s)	49, 92, 301, 413
TauI	GCSGC	1 cut(s)	163
TfiI	GAWTC	2 cut(s)	325, 391
Tru1I	TTAA	2 cut(s)	18, 95
Tru9I	TTAA	2 cut(s)	18, 95
TseI	GCWGC	8 cut(s)	157, 184, 205, 223, 272, 275, 278, 312
TspDTI	ATGAA	3 cut(s)	17, 247, 338
TspGWI	ACGGA	1 cut(s)	55
VpaK11BI	GGWCC	2 cut(s)	63, 335
XapI	RAATTY	1 cut(s)	301
XspI	CTAG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.