Rh6AG149100

Protein SHI RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0009392
Physical Location & Seq
Reverse (-)
23474854 .. 23476631
1778 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG149100.1

Sequence Viewer

Length: 594 bp
ATGGGATCAAGGTCAAGGTGCGAAGACTGTGGGAATAAAGCAAAGAAGGAGTGTGTGTACATGAGATGCAGGACTTGTTGTAAGAACAAAGGGTTTCGGTGCCAAACTCACGTCAAATCGACTTGGGTTCCTCTCTACAAAAGAAGCCTACTCCATGAGCAGCAGCACCCTAATGATGATCACCACAGGCAACAGCAACTTGCTATTGATCAAGGACACATCTTCATCAACCCTGATAAGAAGCTAAGCCAACACAACCCCTCTTCATCATGTGCAGGGCTAGATCGAGATCATCAAGAGGCTAATTTTCCGGTTGAAGTGACTACCATGGCCAAATTTCAGGGTATTCGAGTGAGCTCCATGGACGATATGGTGGATCTGGATCAGCATGCTTATCAGACAAGCGTGATTATAGGTGGCCATGTATTCAGGGGCATTCTCTATGATCAAGGCCCTGCTGTTCATCAGATGAATTATTACACTTCAGCCTCTGCAGCGGATCAACCAAATCCTCCTCCTTCATATCAATTGATTAATCCATTTAACGCTTTCATGCCTGCAGGTACACAATTTTTCCAAAACCTATCATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF702

Protein Analysis

197

Amino Acids

22.35

Weight (kDa)

8.12

Isoelectric Point (pI)

47.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF702 PF05142 5 - 152 1e-48 Domain of unknown function (DUF702)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 551
AccB1I GGYRCC 1 cut(s) 99
AciI CCGC 1 cut(s) 497
AclWI GGATC 4 cut(s) 13, 384, 390, 507
AcoI YGGCCR 2 cut(s) 330, 418
AcsI RAATTY 1 cut(s) 335
AcuI CTGAAG 1 cut(s) 468
AfaI GTAC 2 cut(s) 59, 565
AgsI TTSAA 1 cut(s) 317
AjiI CACGTC 1 cut(s) 112
AluBI AGCT 2 cut(s) 244, 357
AluI AGCT 2 cut(s) 244, 357
Alw21I GWGCWC 1 cut(s) 359
AlwI GGATC 4 cut(s) 13, 384, 390, 507
AlwNI CAGNNNCTG 1 cut(s) 491
AoxI GGCC 3 cut(s) 330, 418, 451
ApeKI GCWGC 3 cut(s) 160, 163, 494
ApoI RAATTY 1 cut(s) 335
AseI ATTAAT 1 cut(s) 534
AspS9I GGNCC 1 cut(s) 452
AsuHPI GGTGA 1 cut(s) 173
BalI TGGCCA 2 cut(s) 332, 420
BanI GGYRCC 1 cut(s) 99
BanII GRGCYC 1 cut(s) 359
BbsI GAAGAC 1 cut(s) 30
Bbv12I GWGCWC 1 cut(s) 359
BbvI GCAGC 3 cut(s) 172, 175, 506
BclI TGATCA 3 cut(s) 178, 208, 445
BfaI CTAG 1 cut(s) 281
BfmI CTRYAG 2 cut(s) 492, 558
BfuAI ACCTGC 1 cut(s) 551
BisI GCNGC 3 cut(s) 161, 164, 495
BlpI GCTNAGC 1 cut(s) 245
BlsI GCNGC 3 cut(s) 162, 165, 496
BmgBI CACGTC 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 452
BmiI GGNNCC 2 cut(s) 101, 129
BmsI GCATC 1 cut(s) 56
BpiI GAAGAC 1 cut(s) 30
Bpu1102I GCTNAGC 1 cut(s) 245
BsaBI GATNNNNATC 2 cut(s) 288, 381
BsaJI CCNNGG 2 cut(s) 327, 360
BsaWI WCCGGW 1 cut(s) 310
BsaXI ACNNNNNCTCC 2 cut(s) 41, 71
Bse8I GATNNNNATC 2 cut(s) 288, 381
BseDI CCNNGG 2 cut(s) 327, 360
BseJI GATNNNNATC 2 cut(s) 288, 381
BseRI GAGGAG 1 cut(s) 504
BseXI GCAGC 3 cut(s) 172, 175, 506
BsgI GTGCAG 1 cut(s) 294
BshFI GGCC 3 cut(s) 332, 420, 453
BshNI GGYRCC 1 cut(s) 99
BsiHKAI GWGCWC 1 cut(s) 359
BsiSI CCGG 1 cut(s) 311
BsmI GAATGC 1 cut(s) 435
BsnI GGCC 3 cut(s) 332, 420, 453
Bsp1286I GDGCHC 1 cut(s) 359
Bsp1407I TGTACA 1 cut(s) 57
Bsp143I GATC 9 cut(s) 5, 178, 208, 283, 289, 376, 382, 445, 499
Bsp1720I GCTNAGC 1 cut(s) 245
Bsp19I CCATGG 2 cut(s) 327, 360
BspACI CCGC 1 cut(s) 497
BspANI GGCC 3 cut(s) 332, 420, 453
BspLI GGNNCC 2 cut(s) 101, 129
BspMAI CTGCAG 2 cut(s) 496, 562
BspMI ACCTGC 1 cut(s) 551
BspPI GGATC 4 cut(s) 13, 384, 390, 507
BspT107I GGYRCC 1 cut(s) 99
BsrGI TGTACA 1 cut(s) 57
BssECI CCNNGG 2 cut(s) 327, 360
BssMI GATC 9 cut(s) 5, 178, 208, 283, 289, 376, 382, 445, 499
BssT1I CCWWGG 2 cut(s) 327, 360
Bst4CI ACNGT 1 cut(s) 29
Bst6I CTCTTC 1 cut(s) 268
BstAUI TGTACA 1 cut(s) 57
BstC8I GCNNGC 2 cut(s) 390, 558
BstDEI CTNAG 1 cut(s) 245
BstDSI CCRYGG 2 cut(s) 327, 360
BstKTI GATC 9 cut(s) 8, 181, 211, 286, 292, 379, 385, 448, 502
BstMBI GATC 9 cut(s) 5, 178, 208, 283, 289, 376, 382, 445, 499
BstMWI GCNNNNNNNGC 1 cut(s) 494
BstNSI RCATGY 1 cut(s) 392
BstSFI CTRYAG 2 cut(s) 492, 558
BstV1I GCAGC 3 cut(s) 172, 175, 506
BstV2I GAAGAC 1 cut(s) 30
BstX2I RGATCY 1 cut(s) 376
BstYI RGATCY 1 cut(s) 376
BsuRI GGCC 3 cut(s) 332, 420, 453
BtgI CCRYGG 2 cut(s) 327, 360
BtrI CACGTC 1 cut(s) 112
BveI ACCTGC 1 cut(s) 551
Cac8I GCNNGC 2 cut(s) 390, 558
CaiI CAGNNNCTG 1 cut(s) 491
Cfr13I GGNCC 1 cut(s) 452
Csp6I GTAC 2 cut(s) 58, 564
CviAII CATG 8 cut(s) 61, 155, 270, 328, 361, 389, 422, 553
CviQI GTAC 2 cut(s) 58, 564
DdeI CTNAG 1 cut(s) 245
DpnI GATC 9 cut(s) 7, 180, 210, 285, 291, 378, 384, 447, 501
DpnII GATC 9 cut(s) 5, 178, 208, 283, 289, 376, 382, 445, 499
EaeI YGGCCR 2 cut(s) 330, 418
Eam1104I CTCTTC 1 cut(s) 268
EarI CTCTTC 1 cut(s) 268
Ecl136II GAGCTC 1 cut(s) 357
Eco130I CCWWGG 2 cut(s) 327, 360
Eco24I GRGCYC 1 cut(s) 359
Eco53kI GAGCTC 1 cut(s) 357
Eco57I CTGAAG 1 cut(s) 468
EcoICRI GAGCTC 1 cut(s) 357
EcoO109I RGGNCCY 1 cut(s) 452
EcoT14I CCWWGG 2 cut(s) 327, 360
EcoT38I GRGCYC 1 cut(s) 359
ErhI CCWWGG 2 cut(s) 327, 360
FaeI CATG 8 cut(s) 64, 158, 273, 331, 364, 392, 425, 556
FatI CATG 8 cut(s) 60, 154, 269, 327, 360, 388, 421, 552
FbaI TGATCA 3 cut(s) 178, 208, 445
Fnu4HI GCNGC 3 cut(s) 161, 164, 495
FriOI GRGCYC 1 cut(s) 359
Fsp4HI GCNGC 3 cut(s) 161, 164, 495
FspBI CTAG 1 cut(s) 281
GluI GCNGC 3 cut(s) 161, 164, 495
HaeIII GGCC 3 cut(s) 332, 420, 453
HapII CCGG 1 cut(s) 311
Hin1II CATG 8 cut(s) 64, 158, 273, 331, 364, 392, 425, 556
HpaII CCGG 1 cut(s) 311
HphI GGTGA 1 cut(s) 173
Hpy166II GTNNAC 2 cut(s) 58, 566
Hpy188I TCNGA 2 cut(s) 399, 468
Hpy188III TCNNGA 3 cut(s) 287, 296, 380
Hpy8I GTNNAC 2 cut(s) 58, 566
HpyAV CCTTC 2 cut(s) 40, 528
HpyCH4III ACNGT 1 cut(s) 29
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 4 cut(s) 69, 275, 494, 560
HpyF10VI GCNNNNNNNGC 1 cut(s) 494
HpyF3I CTNAG 1 cut(s) 245
HpySE526I ACGT 1 cut(s) 111
Hsp92II CATG 8 cut(s) 64, 158, 273, 331, 364, 392, 425, 556
Ksp22I TGATCA 3 cut(s) 178, 208, 445
Kzo9I GATC 9 cut(s) 5, 178, 208, 283, 289, 376, 382, 445, 499
LmnI GCTCC 1 cut(s) 362
Lsp1109I GCAGC 3 cut(s) 172, 175, 506
LweI GCATC 1 cut(s) 56
MaeI CTAG 1 cut(s) 281
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 1 cut(s) 319
MalI GATC 9 cut(s) 7, 180, 210, 285, 291, 378, 384, 447, 501
MboI GATC 9 cut(s) 5, 178, 208, 283, 289, 376, 382, 445, 499
MboII GAAGA 3 cut(s) 35, 214, 255
MfeI CAATTG 1 cut(s) 527
MflI RGATCY 1 cut(s) 376
MhlI GDGCHC 1 cut(s) 359
MlsI TGGCCA 2 cut(s) 332, 420
MluCI AATT 5 cut(s) 304, 335, 472, 527, 569
MluNI TGGCCA 2 cut(s) 332, 420
MnlI CCTC 6 cut(s) 141, 271, 292, 499, 522, 525
Mox20I TGGCCA 2 cut(s) 332, 420
MscI TGGCCA 2 cut(s) 332, 420
MseI TTAA 3 cut(s) 534, 543, 592
MslI CAYNNNNRTG 1 cut(s) 171
Msp20I TGGCCA 2 cut(s) 332, 420
MspA1I CMGCKG 1 cut(s) 497
MspI CCGG 1 cut(s) 311
MunI CAATTG 1 cut(s) 527
Mva1269I GAATGC 1 cut(s) 435
MwoI GCNNNNNNNGC 1 cut(s) 494
NcoI CCATGG 2 cut(s) 327, 360
NdeII GATC 9 cut(s) 5, 178, 208, 283, 289, 376, 382, 445, 499
NlaIII CATG 8 cut(s) 64, 158, 273, 331, 364, 392, 425, 556
NlaIV GGNNCC 2 cut(s) 101, 129
NmuCI GTSAC 1 cut(s) 319
NspI RCATGY 1 cut(s) 392
PaeI GCATGC 1 cut(s) 392
PctI GAATGC 1 cut(s) 435
PkrI GCNGC 3 cut(s) 162, 165, 496
PshBI ATTAAT 1 cut(s) 534
Psp124BI GAGCTC 1 cut(s) 359
PspN4I GGNNCC 2 cut(s) 101, 129
PspPI GGNCC 1 cut(s) 452
PstI CTGCAG 2 cut(s) 496, 562
PstNI CAGNNNCTG 1 cut(s) 491
PsuI RGATCY 1 cut(s) 376
RsaI GTAC 2 cut(s) 59, 565
RsaNI GTAC 2 cut(s) 58, 564
RseI CAYNNNNRTG 1 cut(s) 171
SacI GAGCTC 1 cut(s) 359
SaqAI TTAA 3 cut(s) 534, 543, 592
SatI GCNGC 3 cut(s) 161, 164, 495
Sau3AI GATC 9 cut(s) 5, 178, 208, 283, 289, 376, 382, 445, 499
Sau96I GGNCC 1 cut(s) 452
SbfI CCTGCAGG 1 cut(s) 562
SdaI CCTGCAGG 1 cut(s) 562
SduI GDGCHC 1 cut(s) 359
SetI ASST 8 cut(s) 14, 20, 114, 246, 359, 418, 565, 585
SfaNI GCATC 1 cut(s) 56
SfcI CTRYAG 2 cut(s) 492, 558
SmiMI CAYNNNNRTG 1 cut(s) 171
SphI GCATGC 1 cut(s) 392
Sse8387I CCTGCAGG 1 cut(s) 562
Sse9I AATT 5 cut(s) 304, 335, 472, 527, 569
SsiI CCGC 1 cut(s) 497
SspMI CTAG 1 cut(s) 281
SstI GAGCTC 1 cut(s) 359
StyI CCWWGG 2 cut(s) 327, 360
TaaI ACNGT 1 cut(s) 29
TaiI ACGT 1 cut(s) 114
TaqI TCGA 3 cut(s) 119, 286, 349
TasI AATT 5 cut(s) 304, 335, 472, 527, 569
TatI WGTACW 1 cut(s) 57
Tru1I TTAA 3 cut(s) 534, 543, 592
Tru9I TTAA 3 cut(s) 534, 543, 592
TseFI GTSAC 1 cut(s) 319
TseI GCWGC 3 cut(s) 160, 163, 494
Tsp45I GTSAC 1 cut(s) 319
TspDTI ATGAA 6 cut(s) 214, 255, 452, 485, 510, 541
VspI ATTAAT 1 cut(s) 534
XapI RAATTY 1 cut(s) 335
XceI RCATGY 1 cut(s) 392
XcmI CCANNNNNNNNNTGG 1 cut(s) 367
XspI CTAG 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.