Rorug06G0028000

Protein SHI RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0009392
Physical Location & Seq
Forward (+)
3356344 .. 3356622
279 bp
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UTR
Exon/CDS
Intron
Rorug06G0028000.1

Sequence Viewer

Length: 279 bp
ATGGGTCGTCAGAGAATCGAGGTGCGCAAATTGGAAAATGCTAGTAACCGACAGGTTACATTCTCCAAAAGGAGGTTTGGCGTTTTCAAGAAAGCCAGCGAGCTCTGCACCCTCAGTGGTGTAGAGATTACTCTAATCGTAGATTCTCCAGCAAAGAAGACATATTCGTTTGGCTACCCTTCTATGGAAGCTGTTATTGACCACTATGAGAACATGAACGCTCCCTTGGTGAACAACGGCAACACTGAGCAGCTCATGGAGGCTGCACGTAGAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF702

Protein Analysis

92

Amino Acids

10.5

Weight (kDa)

9.72

Isoelectric Point (pI)

61.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 10 - 57 6.4e-21 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 26
AfiI CCNNNNNNNGG 2 cut(s) 72, 184
AgsI TTSAA 1 cut(s) 88
AjuI GAANNNNNNNTTGG 2 cut(s) 209, 241
AluBI AGCT 3 cut(s) 103, 191, 253
AluI AGCT 3 cut(s) 103, 191, 253
Alw21I GWGCWC 1 cut(s) 105
ApeKI GCWGC 2 cut(s) 250, 263
AspLEI GCGC 1 cut(s) 27
AsuHPI GGTGA 1 cut(s) 241
BanII GRGCYC 1 cut(s) 105
BbsI GAAGAC 1 cut(s) 164
Bbv12I GWGCWC 1 cut(s) 105
BbvI GCAGC 2 cut(s) 250, 262
BceAI ACGGC 1 cut(s) 253
BfaI CTAG 1 cut(s) 42
BisI GCNGC 2 cut(s) 251, 264
BlsI GCNGC 2 cut(s) 252, 265
BpiI GAAGAC 1 cut(s) 164
BpmI CTGGAG 1 cut(s) 132
BsaAI YACGTR 1 cut(s) 269
BsaJI CCNNGG 1 cut(s) 225
Bsc4I CCNNNNNNNGG 2 cut(s) 72, 184
BseDI CCNNGG 1 cut(s) 225
BseLI CCNNNNNNNGG 2 cut(s) 72, 184
BseMII CTCAG 2 cut(s) 127, 237
BseXI GCAGC 2 cut(s) 250, 262
BsgI GTGCAG 2 cut(s) 91, 249
BsiHKAI GWGCWC 1 cut(s) 105
BslI CCNNNNNNNGG 2 cut(s) 72, 184
Bsp1286I GDGCHC 1 cut(s) 105
BspCNI CTCAG 2 cut(s) 126, 238
BssECI CCNNGG 1 cut(s) 225
BssT1I CCWWGG 1 cut(s) 225
BstBAI YACGTR 1 cut(s) 269
BstC8I GCNNGC 2 cut(s) 97, 101
BstDEI CTNAG 2 cut(s) 113, 246
BstHHI GCGC 1 cut(s) 27
BstMWI GCNNNNNNNGC 1 cut(s) 105
BstV1I GCAGC 2 cut(s) 250, 262
BstV2I GAAGAC 1 cut(s) 164
BtsIMutI CAGTG 2 cut(s) 121, 243
Cac8I GCNNGC 2 cut(s) 97, 101
CfoI GCGC 1 cut(s) 27
CviAII CATG 2 cut(s) 214, 256
CviJI RGCY 6 cut(s) 95, 103, 174, 191, 253, 263
CviKI_1 RGCY 6 cut(s) 95, 103, 174, 191, 253, 263
DdeI CTNAG 2 cut(s) 113, 246
Ecl136II GAGCTC 1 cut(s) 103
Eco130I CCWWGG 1 cut(s) 225
Eco24I GRGCYC 1 cut(s) 105
Eco53kI GAGCTC 1 cut(s) 103
EcoICRI GAGCTC 1 cut(s) 103
EcoT14I CCWWGG 1 cut(s) 225
EcoT38I GRGCYC 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 225
FaeI CATG 2 cut(s) 217, 259
FaiI YATR 5 cut(s) 163, 185, 207, 215, 257
FatI CATG 2 cut(s) 213, 255
Fnu4HI GCNGC 2 cut(s) 251, 264
FriOI GRGCYC 1 cut(s) 105
Fsp4HI GCNGC 2 cut(s) 251, 264
FspBI CTAG 1 cut(s) 42
FspI TGCGCA 1 cut(s) 26
GlaI GCGC 1 cut(s) 26
GluI GCNGC 2 cut(s) 251, 264
GsuI CTGGAG 1 cut(s) 132
HhaI GCGC 1 cut(s) 27
Hin1II CATG 2 cut(s) 217, 259
Hin6I GCGC 1 cut(s) 25
HinP1I GCGC 1 cut(s) 25
HinfI GANTC 2 cut(s) 15, 143
HphI GGTGA 1 cut(s) 241
Hpy166II GTNNAC 1 cut(s) 232
Hpy188I TCNGA 1 cut(s) 12
Hpy188III TCNNGA 1 cut(s) 88
Hpy8I GTNNAC 1 cut(s) 232
HpyAV CCTTC 1 cut(s) 189
HpyCH4IV ACGT 1 cut(s) 268
HpyCH4V TGCA 2 cut(s) 108, 266
HpyF10VI GCNNNNNNNGC 1 cut(s) 105
HpyF3I CTNAG 2 cut(s) 113, 246
HpySE526I ACGT 1 cut(s) 268
Hsp92II CATG 2 cut(s) 217, 259
HspAI GCGC 1 cut(s) 25
LmnI GCTCC 1 cut(s) 226
LpnPI CCDG 3 cut(s) 38, 109, 162
Lsp1109I GCAGC 2 cut(s) 250, 262
MaeI CTAG 1 cut(s) 42
MaeII ACGT 1 cut(s) 268
MaeIII GTNAC 2 cut(s) 44, 55
MboII GAAGA 1 cut(s) 169
MhlI GDGCHC 1 cut(s) 105
MluCI AATT 1 cut(s) 29
MnlI CCTC 4 cut(s) 13, 66, 122, 253
MwoI GCNNNNNNNGC 1 cut(s) 105
NlaIII CATG 2 cut(s) 217, 259
NsbI TGCGCA 1 cut(s) 26
PfeI GAWTC 2 cut(s) 15, 143
PkrI GCNGC 2 cut(s) 252, 265
Ppu21I YACGTR 1 cut(s) 269
Psp124BI GAGCTC 1 cut(s) 105
SacI GAGCTC 1 cut(s) 105
SatI GCNGC 2 cut(s) 251, 264
SduI GDGCHC 1 cut(s) 105
SetI ASST 7 cut(s) 24, 57, 77, 105, 193, 255, 271
Sse9I AATT 1 cut(s) 29
SspMI CTAG 1 cut(s) 42
SstI GAGCTC 1 cut(s) 105
StyI CCWWGG 1 cut(s) 225
TaiI ACGT 1 cut(s) 271
TaqI TCGA 1 cut(s) 18
TasI AATT 1 cut(s) 29
TfiI GAWTC 2 cut(s) 15, 143
TscAI CASTG 2 cut(s) 121, 250
TseI GCWGC 2 cut(s) 250, 263
TspDTI ATGAA 1 cut(s) 230
TspRI CASTG 2 cut(s) 121, 250
XspI CTAG 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.