Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000486.1

Orthogroup ID

OG0009392

Physical Location & Seq

Genomic Coordinates Reverse (-)

14050 .. 14975

Gene Structure 926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000486.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

atgggatcaaggtcaaggtgcgaagactgtgggaataaagcaaagaaggagtgtgtgtacatgagatgcaggacttgttgtaagaacaaagggtttcggtgccaaactcacgtcaaatcgacttgggttcctctctacaaaagaagcctactcaatgagcagcagcaccctaatgatgatcaccacaggcaacagcaacttgctattgatcaaggacacatcttcatcaaccctgataagaagctaagacaacacaagccctcttcatcatgtgcagggctagatcgagatcatcaagaggctaattttccggctgaagtgactaccatggccaaatttcagggtattcgagtgagctccatggacgatatggtggatctggatcagcatgcttatcagacaagcgtgattataggtggccatgtattcaggggcattctctatgatcaaggccctgctgttcatcagatggattattacacttcagcctctgcagcggatcaaccacatcctcctccttcatatcaattgattaatccatttaacgctttcatgcctgcaggtacacaatttttccaaaacctatcatcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF702

Protein Analysis

197

Amino Acids

22.4

Weight (kDa)

8.41

Isoelectric Point (pI)

48.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21400 AT2G21400 AT2G21400 AT2G21400
fragaria_vesca	FvH4_2g10010 FvH4_2g10010
malus_domestica	MD05G1058700.v1.1 MD10G1066400.v1.1
prunus_persica	Prupe.8G088300_v2.0.a1
pyrus_communis	pycom05g04960 pycom10g05190
rosa_chinensis	RchiOBHm_Chr6g0266901
rosa_laevigata	RLG00000014061
rosa_multiflora	Rmu_ssc0000486.1_g000003
rosa_roxburghii	Rroxscaffold_7G00201300
rosa_rugosa	Rorug06G0028000 Rorug06G0028100
rosa_samantha	Rh6AG149100 Rh6BG150100 Rh6CG145000 Rh6DG134300
rosa_wichuraiana	Rw6G012900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	551
AccB1I	GGYRCC	1 cut(s)	99
AciI	CCGC	1 cut(s)	497
AclWI	GGATC	4 cut(s)	13, 384, 390, 507
AcoI	YGGCCR	2 cut(s)	330, 418
AcsI	RAATTY	1 cut(s)	335
AcuI	CTGAAG	2 cut(s)	336, 468
AfaI	GTAC	2 cut(s)	59, 565
AjiI	CACGTC	1 cut(s)	112
AluBI	AGCT	2 cut(s)	244, 357
AluI	AGCT	2 cut(s)	244, 357
Alw21I	GWGCWC	1 cut(s)	359
AlwI	GGATC	4 cut(s)	13, 384, 390, 507
AlwNI	CAGNNNCTG	1 cut(s)	491
AoxI	GGCC	3 cut(s)	330, 418, 451
ApeKI	GCWGC	3 cut(s)	160, 163, 494
ApoI	RAATTY	1 cut(s)	335
AseI	ATTAAT	1 cut(s)	534
AspS9I	GGNCC	1 cut(s)	452
AsuHPI	GGTGA	1 cut(s)	173
BalI	TGGCCA	2 cut(s)	332, 420
BanI	GGYRCC	1 cut(s)	99
BanII	GRGCYC	1 cut(s)	359
BbsI	GAAGAC	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	359
BbvI	GCAGC	3 cut(s)	172, 175, 506
BccI	CCATC	1 cut(s)	463
BclI	TGATCA	3 cut(s)	178, 208, 445
BfaI	CTAG	1 cut(s)	281
BfmI	CTRYAG	2 cut(s)	492, 558
BfuAI	ACCTGC	1 cut(s)	551
BisI	GCNGC	3 cut(s)	161, 164, 495
BlsI	GCNGC	3 cut(s)	162, 165, 496
BmgBI	CACGTC	1 cut(s)	112
BmgT120I	GGNCC	1 cut(s)	452
BmiI	GGNNCC	2 cut(s)	101, 129
BmsI	GCATC	1 cut(s)	56
BpiI	GAAGAC	1 cut(s)	30
BsaBI	GATNNNNATC	2 cut(s)	288, 381
BsaJI	CCNNGG	2 cut(s)	327, 360
BsaXI	ACNNNNNCTCC	2 cut(s)	41, 71
Bse8I	GATNNNNATC	2 cut(s)	288, 381
BseDI	CCNNGG	2 cut(s)	327, 360
BseGI	GGATG	1 cut(s)	508
BseJI	GATNNNNATC	2 cut(s)	288, 381
BseRI	GAGGAG	1 cut(s)	504
BseXI	GCAGC	3 cut(s)	172, 175, 506
BsgI	GTGCAG	1 cut(s)	294
BshFI	GGCC	3 cut(s)	332, 420, 453
BshNI	GGYRCC	1 cut(s)	99
BsiHKAI	GWGCWC	1 cut(s)	359
BsiSI	CCGG	1 cut(s)	311
BsmI	GAATGC	1 cut(s)	435
BsnI	GGCC	3 cut(s)	332, 420, 453
Bsp1286I	GDGCHC	1 cut(s)	359
Bsp1407I	TGTACA	1 cut(s)	57
Bsp143I	GATC	9 cut(s)	5, 178, 208, 283, 289, 376, 382, 445, 499
Bsp19I	CCATGG	2 cut(s)	327, 360
BspACI	CCGC	1 cut(s)	497
BspANI	GGCC	3 cut(s)	332, 420, 453
BspLI	GGNNCC	2 cut(s)	101, 129
BspMAI	CTGCAG	2 cut(s)	496, 562
BspMI	ACCTGC	1 cut(s)	551
BspPI	GGATC	4 cut(s)	13, 384, 390, 507
BspT107I	GGYRCC	1 cut(s)	99
BsrGI	TGTACA	1 cut(s)	57
BssECI	CCNNGG	2 cut(s)	327, 360
BssMI	GATC	9 cut(s)	5, 178, 208, 283, 289, 376, 382, 445, 499
BssT1I	CCWWGG	2 cut(s)	327, 360
Bst4CI	ACNGT	1 cut(s)	29
Bst6I	CTCTTC	1 cut(s)	268
BstAUI	TGTACA	1 cut(s)	57
BstC8I	GCNNGC	2 cut(s)	390, 558
BstDEI	CTNAG	1 cut(s)	245
BstDSI	CCRYGG	2 cut(s)	327, 360
BstF5I	GGATG	1 cut(s)	508
BstKTI	GATC	9 cut(s)	8, 181, 211, 286, 292, 379, 385, 448, 502
BstMBI	GATC	9 cut(s)	5, 178, 208, 283, 289, 376, 382, 445, 499
BstMWI	GCNNNNNNNGC	1 cut(s)	494
BstNSI	RCATGY	1 cut(s)	392
BstSFI	CTRYAG	2 cut(s)	492, 558
BstV1I	GCAGC	3 cut(s)	172, 175, 506
BstV2I	GAAGAC	1 cut(s)	30
BstX2I	RGATCY	1 cut(s)	376
BstYI	RGATCY	1 cut(s)	376
BsuRI	GGCC	3 cut(s)	332, 420, 453
BtgI	CCRYGG	2 cut(s)	327, 360
BtrI	CACGTC	1 cut(s)	112
BtsCI	GGATG	1 cut(s)	508
BveI	ACCTGC	1 cut(s)	551
Cac8I	GCNNGC	2 cut(s)	390, 558
CaiI	CAGNNNCTG	1 cut(s)	491
Cfr13I	GGNCC	1 cut(s)	452
Csp6I	GTAC	2 cut(s)	58, 564
CviAII	CATG	7 cut(s)	61, 270, 328, 361, 389, 422, 553
CviQI	GTAC	2 cut(s)	58, 564
DdeI	CTNAG	1 cut(s)	245
DpnI	GATC	9 cut(s)	7, 180, 210, 285, 291, 378, 384, 447, 501
DpnII	GATC	9 cut(s)	5, 178, 208, 283, 289, 376, 382, 445, 499
EaeI	YGGCCR	2 cut(s)	330, 418
Eam1104I	CTCTTC	1 cut(s)	268
EarI	CTCTTC	1 cut(s)	268
Ecl136II	GAGCTC	1 cut(s)	357
Eco130I	CCWWGG	2 cut(s)	327, 360
Eco24I	GRGCYC	1 cut(s)	359
Eco53kI	GAGCTC	1 cut(s)	357
Eco57I	CTGAAG	2 cut(s)	336, 468
EcoICRI	GAGCTC	1 cut(s)	357
EcoO109I	RGGNCCY	1 cut(s)	452
EcoT14I	CCWWGG	2 cut(s)	327, 360
EcoT38I	GRGCYC	1 cut(s)	359
ErhI	CCWWGG	2 cut(s)	327, 360
FaeI	CATG	7 cut(s)	64, 273, 331, 364, 392, 425, 556
FatI	CATG	7 cut(s)	60, 269, 327, 360, 388, 421, 552
FbaI	TGATCA	3 cut(s)	178, 208, 445
Fnu4HI	GCNGC	3 cut(s)	161, 164, 495
FokI	GGATG	1 cut(s)	495
FriOI	GRGCYC	1 cut(s)	359
Fsp4HI	GCNGC	3 cut(s)	161, 164, 495
FspBI	CTAG	1 cut(s)	281
GluI	GCNGC	3 cut(s)	161, 164, 495
HaeIII	GGCC	3 cut(s)	332, 420, 453
HapII	CCGG	1 cut(s)	311
Hin1II	CATG	7 cut(s)	64, 273, 331, 364, 392, 425, 556
HpaII	CCGG	1 cut(s)	311
HphI	GGTGA	1 cut(s)	173
Hpy166II	GTNNAC	2 cut(s)	58, 566
Hpy188I	TCNGA	2 cut(s)	399, 468
Hpy188III	TCNNGA	3 cut(s)	287, 296, 380
Hpy8I	GTNNAC	2 cut(s)	58, 566
HpyAV	CCTTC	2 cut(s)	40, 528
HpyCH4III	ACNGT	1 cut(s)	29
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	4 cut(s)	69, 275, 494, 560
HpyF10VI	GCNNNNNNNGC	1 cut(s)	494
HpyF3I	CTNAG	1 cut(s)	245
HpySE526I	ACGT	1 cut(s)	111
Hsp92II	CATG	7 cut(s)	64, 273, 331, 364, 392, 425, 556
Ksp22I	TGATCA	3 cut(s)	178, 208, 445
Kzo9I	GATC	9 cut(s)	5, 178, 208, 283, 289, 376, 382, 445, 499
LmnI	GCTCC	1 cut(s)	362
Lsp1109I	GCAGC	3 cut(s)	172, 175, 506
LweI	GCATC	1 cut(s)	56
MaeI	CTAG	1 cut(s)	281
MaeII	ACGT	1 cut(s)	111
MaeIII	GTNAC	1 cut(s)	319
MalI	GATC	9 cut(s)	7, 180, 210, 285, 291, 378, 384, 447, 501
MboI	GATC	9 cut(s)	5, 178, 208, 283, 289, 376, 382, 445, 499
MboII	GAAGA	3 cut(s)	35, 214, 255
MfeI	CAATTG	1 cut(s)	527
MflI	RGATCY	1 cut(s)	376
MhlI	GDGCHC	1 cut(s)	359
MlsI	TGGCCA	2 cut(s)	332, 420
MluCI	AATT	4 cut(s)	304, 335, 527, 569
MluNI	TGGCCA	2 cut(s)	332, 420
MnlI	CCTC	6 cut(s)	141, 271, 292, 499, 522, 525
Mox20I	TGGCCA	2 cut(s)	332, 420
MscI	TGGCCA	2 cut(s)	332, 420
MseI	TTAA	3 cut(s)	534, 543, 592
MslI	CAYNNNNRTG	1 cut(s)	171
Msp20I	TGGCCA	2 cut(s)	332, 420
MspA1I	CMGCKG	1 cut(s)	497
MspI	CCGG	1 cut(s)	311
MunI	CAATTG	1 cut(s)	527
Mva1269I	GAATGC	1 cut(s)	435
MwoI	GCNNNNNNNGC	1 cut(s)	494
NcoI	CCATGG	2 cut(s)	327, 360
NdeII	GATC	9 cut(s)	5, 178, 208, 283, 289, 376, 382, 445, 499
NlaIII	CATG	7 cut(s)	64, 273, 331, 364, 392, 425, 556
NlaIV	GGNNCC	2 cut(s)	101, 129
NmuCI	GTSAC	1 cut(s)	319
NspI	RCATGY	1 cut(s)	392
PaeI	GCATGC	1 cut(s)	392
PctI	GAATGC	1 cut(s)	435
PkrI	GCNGC	3 cut(s)	162, 165, 496
PshBI	ATTAAT	1 cut(s)	534
Psp124BI	GAGCTC	1 cut(s)	359
PspN4I	GGNNCC	2 cut(s)	101, 129
PspPI	GGNCC	1 cut(s)	452
PstI	CTGCAG	2 cut(s)	496, 562
PstNI	CAGNNNCTG	1 cut(s)	491
PsuI	RGATCY	1 cut(s)	376
RsaI	GTAC	2 cut(s)	59, 565
RsaNI	GTAC	2 cut(s)	58, 564
RseI	CAYNNNNRTG	1 cut(s)	171
SacI	GAGCTC	1 cut(s)	359
SaqAI	TTAA	3 cut(s)	534, 543, 592
SatI	GCNGC	3 cut(s)	161, 164, 495
Sau3AI	GATC	9 cut(s)	5, 178, 208, 283, 289, 376, 382, 445, 499
Sau96I	GGNCC	1 cut(s)	452
SbfI	CCTGCAGG	1 cut(s)	562
SdaI	CCTGCAGG	1 cut(s)	562
SduI	GDGCHC	1 cut(s)	359
SetI	ASST	8 cut(s)	14, 20, 114, 246, 359, 418, 565, 585
SfaNI	GCATC	1 cut(s)	56
SfcI	CTRYAG	2 cut(s)	492, 558
SmiMI	CAYNNNNRTG	1 cut(s)	171
SphI	GCATGC	1 cut(s)	392
Sse8387I	CCTGCAGG	1 cut(s)	562
Sse9I	AATT	4 cut(s)	304, 335, 527, 569
SsiI	CCGC	1 cut(s)	497
SspMI	CTAG	1 cut(s)	281
SstI	GAGCTC	1 cut(s)	359
StyI	CCWWGG	2 cut(s)	327, 360
TaaI	ACNGT	1 cut(s)	29
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	3 cut(s)	119, 286, 349
TasI	AATT	4 cut(s)	304, 335, 527, 569
TatI	WGTACW	1 cut(s)	57
Tru1I	TTAA	3 cut(s)	534, 543, 592
Tru9I	TTAA	3 cut(s)	534, 543, 592
TseFI	GTSAC	1 cut(s)	319
TseI	GCWGC	3 cut(s)	160, 163, 494
Tsp45I	GTSAC	1 cut(s)	319
TspDTI	ATGAA	5 cut(s)	214, 255, 452, 510, 541
VspI	ATTAAT	1 cut(s)	534
XapI	RAATTY	1 cut(s)	335
XceI	RCATGY	1 cut(s)	392
XcmI	CCANNNNNNNNNTGG	1 cut(s)	367
XspI	CTAG	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.