Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0011302

Physical Location & Seq

Genomic Coordinates Reverse (-)

8883183 .. 8889748

Gene Structure 6566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g10050.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGCTTCCTCCTCCTCCTCACTCTTCATGCCCACGTCTCTCTCCCCACAACCTCCTCGATGCTCTCATCACCAGGCACATTGCTTTGGCATAAACTTTTCATTGCTAAAGAATTGGGATTCTGTGGCTTCCGGGATGTGGAGGACGAGTCCATTCGGTTCGACTAATTTGATGGATTCTAAGAAGAGGAGAACTTTGATCTGTGCAGTCAATCAAGATCCTGAGGAAGCATTCAAAAAGACTGTAGAAGTCGATAGGCTGATAGACAAATTGAGGGAAGCAAATCCAATTGAACTTCAGAAGCTTGTTGTTGAAAATGTGTTGGCATTTAATGAGGGCTTTTGGATACGGCTTGCAGCAAGAACTGATACCTGCAAATCAGAAGATGATAAAAAAGATTATGAGGAATTGGCTATATCTGTAATGAGCACAGTGGATCGCCTTGTTCACAAGACCAATGAGAAGATAAATTCAGCTACTGATGTCCTTAAGGGGATTCTGAAACCTGTAGTTGATGATGTTGTAGAAATCCAGTGGCCTCCTAGAGATCCTGAGTCTCTTAAATTAATGGAGAAAGAAATCACTGAACGGGAACAAGACGGGCAACTGGATGAAGGCTTCCTTTCAGAAGTTAACGCGCAACTAAGACAAGCAAAAGAAGATGGAGATAAGCCAGGGCTTGAGGCTATGTTACAAAAGGTTTTACAACTATATGCTTCTAAAGTTCTATCCAAACGCAGTTATGCAAAGAAAGGGGATGAAATTCTGAAGGCTGAGGAGTTTCTTGAATCCATAATTAAAGCTCCTGAGGAAGAATGGAACAAGCTATTGCTCAATGGATTGTCAATTGGCAAAGGTGAAATTCCACCACCTGACCTCTATGCTGTCATTAAGAAAAGGATTGAACGAACTCTGATCCGAACGGAGGGTGGTTCTTACCAGCAGCGTGTTCTTTCCGAGTACCTGAATGGCATTCAATCGAGAGCAGAGCAAGTTGTCCAAGTACTAGAGGGCAAGCTGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

342

Amino Acids

38.57

Weight (kDa)

5.55

Isoelectric Point (pI)

46.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21385 AT2G21385 AT2G21385 AT2G21385 AT2G21385
fragaria_vesca	FvH4_2g10050
malus_domestica	MD10G1066100.v1.1
prunus_persica	Prupe.8G088000_v2.0.a1 Prupe.8G088000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0266981
rosa_laevigata	RLG00000014054
rosa_multiflora	Rmu_sc0011492.1_g000003 Rmu_sc0017071.1_g000006
rosa_roxburghii	Rroxscaffold_7G00201240
rosa_rugosa	Rorug06G0028400
rosa_samantha	Rh6AG149800 Rh6BG150700 Rh6CG145800 Rh6DG134800
rosa_wichuraiana	Rw6G012970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	380
AccII	CGCG	1 cut(s)	638
AclWI	GGATC	4 cut(s)	212, 444, 542, 910
AcsI	RAATTY	3 cut(s)	469, 762, 861
AcuI	CTGAAG	2 cut(s)	281, 788
AfaI	GTAC	2 cut(s)	962, 1005
AfiI	CCNNNNNNNGG	2 cut(s)	138, 925
AflII	CTTAAG	1 cut(s)	488
AgsI	TTSAA	6 cut(s)	235, 293, 314, 788, 905, 977
AjiI	CACGTC	1 cut(s)	36
AjnI	CCWGG	2 cut(s)	72, 673
AluBI	AGCT	5 cut(s)	304, 476, 803, 826, 1018
AluI	AGCT	5 cut(s)	304, 476, 803, 826, 1018
Alw21I	GWGCWC	1 cut(s)	431
Alw26I	GTCTC	2 cut(s)	42, 561
AlwI	GGATC	4 cut(s)	212, 444, 542, 910
AlwNI	CAGNNNCTG	1 cut(s)	479
AoxI	GGCC	1 cut(s)	536
ApeKI	GCWGC	3 cut(s)	356, 943, 1018
ApoI	RAATTY	3 cut(s)	469, 762, 861
AseI	ATTAAT	1 cut(s)	566
AspLEI	GCGC	1 cut(s)	640
AsuC2I	CCSGG	1 cut(s)	133
AsuHPI	GGTGA	2 cut(s)	62, 869
AxyI	CCTNAGG	2 cut(s)	222, 807
Bbv12I	GWGCWC	1 cut(s)	431
BbvCI	CCTCAGC	1 cut(s)	774
BbvI	GCAGC	3 cut(s)	368, 955, 1005
BccI	CCATC	2 cut(s)	166, 656
BceAI	ACGGC	1 cut(s)	365
BciT130I	CCWGG	2 cut(s)	74, 675
BciVI	GTATCC	1 cut(s)	339
BcnI	CCSGG	1 cut(s)	133
BcoDI	GTCTC	2 cut(s)	42, 561
BfaI	CTAG	2 cut(s)	543, 1007
BfmI	CTRYAG	2 cut(s)	243, 507
BfrI	CTTAAG	1 cut(s)	488
BfuAI	ACCTGC	1 cut(s)	380
BfuI	GTATCC	1 cut(s)	339
BisI	GCNGC	3 cut(s)	357, 944, 1019
BlsI	GCNGC	3 cut(s)	358, 945, 1020
BmcAI	AGTACT	1 cut(s)	1005
Bme1390I	CCNGG	3 cut(s)	74, 133, 675
BmgBI	CACGTC	1 cut(s)	36
BmrFI	CCNGG	3 cut(s)	74, 133, 675
BmsI	GCATC	1 cut(s)	50
Bpu10I	CCTNAGC	1 cut(s)	774
BpuEI	CTTGAG	1 cut(s)	701
BpuMI	CCSGG	1 cut(s)	133
BsaJI	CCNNGG	1 cut(s)	674
BsaXI	ACNNNNNCTCC	2 cut(s)	133, 163
Bsc4I	CCNNNNNNNGG	2 cut(s)	138, 925
Bse1I	ACTGG	2 cut(s)	532, 612
Bse21I	CCTNAGG	2 cut(s)	222, 807
Bse3DI	GCAATG	2 cut(s)	79, 101
BseBI	CCWGG	2 cut(s)	74, 675
BseDI	CCNNGG	1 cut(s)	674
BseGI	GGATG	3 cut(s)	141, 616, 763
BseLI	CCNNNNNNNGG	2 cut(s)	138, 925
BseMI	GCAATG	2 cut(s)	79, 101
BseMII	CTCAG	4 cut(s)	213, 543, 765, 798
BseNI	ACTGG	2 cut(s)	532, 612
BseRI	GAGGAG	5 cut(s)	4, 7, 45, 202, 791
BseXI	GCAGC	3 cut(s)	368, 955, 1005
BsgI	GTGCAG	1 cut(s)	225
Bsh1236I	CGCG	1 cut(s)	638
BshFI	GGCC	1 cut(s)	538
BsiHKAI	GWGCWC	1 cut(s)	431
BsiSI	CCGG	1 cut(s)	132
BslI	CCNNNNNNNGG	2 cut(s)	138, 925
BsmAI	GTCTC	2 cut(s)	42, 561
BsmBI	CGTCTC	1 cut(s)	42
BsmI	GAATGC	2 cut(s)	230, 972
BsnI	GGCC	1 cut(s)	538
Bsp1286I	GDGCHC	1 cut(s)	431
Bsp143I	GATC	5 cut(s)	198, 217, 436, 547, 915
BspANI	GGCC	1 cut(s)	538
BspCNI	CTCAG	4 cut(s)	214, 544, 766, 799
BspFNI	CGCG	1 cut(s)	638
BspMI	ACCTGC	1 cut(s)	380
BspPI	GGATC	4 cut(s)	212, 444, 542, 910
BspTI	CTTAAG	1 cut(s)	488
BsrDI	GCAATG	2 cut(s)	79, 101
BsrI	ACTGG	2 cut(s)	532, 612
BssECI	CCNNGG	1 cut(s)	674
BssMI	GATC	5 cut(s)	198, 217, 436, 547, 915
Bst2UI	CCWGG	2 cut(s)	74, 675
Bst4CI	ACNGT	2 cut(s)	244, 433
Bst6I	CTCTTC	2 cut(s)	29, 179
BstAFI	CTTAAG	1 cut(s)	488
BstC8I	GCNNGC	2 cut(s)	354, 1016
BstDEI	CTNAG	6 cut(s)	180, 222, 552, 644, 774, 807
BstF5I	GGATG	3 cut(s)	141, 616, 763
BstFNI	CGCG	1 cut(s)	638
BstHHI	GCGC	1 cut(s)	640
BstKTI	GATC	5 cut(s)	201, 220, 439, 550, 918
BstMAI	GTCTC	2 cut(s)	42, 561
BstMBI	GATC	5 cut(s)	198, 217, 436, 547, 915
BstNI	CCWGG	2 cut(s)	74, 675
BstSCI	CCNGG	3 cut(s)	72, 131, 673
BstSFI	CTRYAG	2 cut(s)	243, 507
BstUI	CGCG	1 cut(s)	638
BstV1I	GCAGC	3 cut(s)	368, 955, 1005
BstX2I	RGATCY	2 cut(s)	217, 547
BstYI	RGATCY	2 cut(s)	217, 547
Bsu36I	CCTNAGG	2 cut(s)	222, 807
BsuI	GTATCC	1 cut(s)	339
BsuRI	GGCC	1 cut(s)	538
BtrI	CACGTC	1 cut(s)	36
BtsCI	GGATG	3 cut(s)	141, 616, 763
BtsIMutI	CAGTG	3 cut(s)	438, 539, 582
BveI	ACCTGC	1 cut(s)	380
Cac8I	GCNNGC	2 cut(s)	354, 1016
CaiI	CAGNNNCTG	1 cut(s)	479
CfoI	GCGC	1 cut(s)	640
Csp6I	GTAC	2 cut(s)	961, 1004
CviAII	CATG	1 cut(s)	28
CviQI	GTAC	2 cut(s)	961, 1004
DdeI	CTNAG	6 cut(s)	180, 222, 552, 644, 774, 807
DpnI	GATC	5 cut(s)	200, 219, 438, 549, 917
DpnII	GATC	5 cut(s)	198, 217, 436, 547, 915
Eam1104I	CTCTTC	2 cut(s)	29, 179
EarI	CTCTTC	2 cut(s)	29, 179
Eco57I	CTGAAG	2 cut(s)	281, 788
Eco81I	CCTNAGG	2 cut(s)	222, 807
EcoRII	CCWGG	2 cut(s)	72, 673
Esp3I	CGTCTC	1 cut(s)	42
FaeI	CATG	1 cut(s)	31
FalI	AAGNNNNNCTT	2 cut(s)	606, 638
FatI	CATG	1 cut(s)	27
Fnu4HI	GCNGC	3 cut(s)	357, 944, 1019
FokI	GGATG	3 cut(s)	148, 623, 770
Fsp4HI	GCNGC	3 cut(s)	357, 944, 1019
FspBI	CTAG	2 cut(s)	543, 1007
GlaI	GCGC	1 cut(s)	639
GluI	GCNGC	3 cut(s)	357, 944, 1019
HaeIII	GGCC	1 cut(s)	538
HapII	CCGG	1 cut(s)	132
HhaI	GCGC	1 cut(s)	640
Hin1II	CATG	1 cut(s)	31
Hin6I	GCGC	1 cut(s)	638
HinP1I	GCGC	1 cut(s)	638
HincII	GTYRAC	1 cut(s)	634
HindII	GTYRAC	1 cut(s)	634
HindIII	AAGCTT	1 cut(s)	302
HinfI	GANTC	6 cut(s)	119, 148, 176, 496, 554, 788
HpaI	GTTAAC	1 cut(s)	634
HpaII	CCGG	1 cut(s)	132
HphI	GGTGA	2 cut(s)	62, 869
Hpy166II	GTNNAC	2 cut(s)	448, 634
Hpy188I	TCNGA	8 cut(s)	300, 382, 501, 628, 768, 915, 920, 958
Hpy188III	TCNNGA	6 cut(s)	215, 221, 551, 785, 806, 981
Hpy8I	GTNNAC	2 cut(s)	448, 634
HpyAV	CCTTC	2 cut(s)	608, 763
HpyCH4III	ACNGT	2 cut(s)	244, 433
HpyCH4IV	ACGT	1 cut(s)	35
HpyCH4V	TGCA	5 cut(s)	206, 356, 375, 746, 1021
HpyF3I	CTNAG	6 cut(s)	180, 222, 552, 644, 774, 807
HpySE526I	ACGT	1 cut(s)	35
Hsp92II	CATG	1 cut(s)	31
HspAI	GCGC	1 cut(s)	638
KspAI	GTTAAC	1 cut(s)	634
Kzo9I	GATC	5 cut(s)	198, 217, 436, 547, 915
LmnI	GCTCC	1 cut(s)	808
Lsp1109I	GCAGC	3 cut(s)	368, 955, 1005
LweI	GCATC	1 cut(s)	50
MaeI	CTAG	2 cut(s)	543, 1007
MaeII	ACGT	1 cut(s)	35
MaeIII	GTNAC	1 cut(s)	690
MalI	GATC	5 cut(s)	200, 219, 438, 549, 917
MboI	GATC	5 cut(s)	198, 217, 436, 547, 915
MboII	GAAGA	6 cut(s)	16, 196, 395, 475, 671, 824
MfeI	CAATTG	2 cut(s)	288, 846
MflI	RGATCY	2 cut(s)	217, 547
MhlI	GDGCHC	1 cut(s)	431
MlyI	GAGTC	2 cut(s)	157, 563
MseI	TTAA	7 cut(s)	330, 489, 561, 566, 633, 798, 891
MspCI	CTTAAG	1 cut(s)	488
MspI	CCGG	1 cut(s)	132
MspR9I	CCNGG	3 cut(s)	74, 133, 675
MunI	CAATTG	2 cut(s)	288, 846
Mva1269I	GAATGC	2 cut(s)	230, 972
MvaI	CCWGG	2 cut(s)	74, 675
MvnI	CGCG	1 cut(s)	638
NciI	CCSGG	1 cut(s)	133
NdeII	GATC	5 cut(s)	198, 217, 436, 547, 915
NlaIII	CATG	1 cut(s)	31
PctI	GAATGC	2 cut(s)	230, 972
PfeI	GAWTC	4 cut(s)	119, 176, 496, 788
PfoI	TCCNGGA	1 cut(s)	131
PkrI	GCNGC	3 cut(s)	358, 945, 1020
PleI	GAGTC	2 cut(s)	156, 562
PpsI	GAGTC	2 cut(s)	156, 562
PshBI	ATTAAT	1 cut(s)	566
Psp6I	CCWGG	2 cut(s)	72, 673
PspGI	CCWGG	2 cut(s)	72, 673
PstNI	CAGNNNCTG	1 cut(s)	479
PsuI	RGATCY	2 cut(s)	217, 547
RsaI	GTAC	2 cut(s)	962, 1005
RsaNI	GTAC	2 cut(s)	961, 1004
SaqAI	TTAA	7 cut(s)	330, 489, 561, 566, 633, 798, 891
SatI	GCNGC	3 cut(s)	357, 944, 1019
Sau3AI	GATC	5 cut(s)	198, 217, 436, 547, 915
ScaI	AGTACT	1 cut(s)	1005
SchI	GAGTC	2 cut(s)	157, 563
ScrFI	CCNGG	3 cut(s)	74, 133, 675
SduI	GDGCHC	1 cut(s)	431
SfaNI	GCATC	1 cut(s)	50
SfcI	CTRYAG	2 cut(s)	243, 507
SmlI	CTYRAG	2 cut(s)	488, 680
SmoI	CTYRAG	2 cut(s)	488, 680
SspMI	CTAG	2 cut(s)	543, 1007
StyD4I	CCNGG	3 cut(s)	72, 131, 673
TaaI	ACNGT	2 cut(s)	244, 433
TaiI	ACGT	1 cut(s)	38
TaqI	TCGA	4 cut(s)	58, 161, 252, 980
TatI	WGTACW	1 cut(s)	1003
TfiI	GAWTC	4 cut(s)	119, 176, 496, 788
Tru1I	TTAA	7 cut(s)	330, 489, 561, 566, 633, 798, 891
Tru9I	TTAA	7 cut(s)	330, 489, 561, 566, 633, 798, 891
TscAI	CASTG	3 cut(s)	438, 539, 589
TseI	GCWGC	3 cut(s)	356, 943, 1018
TspDTI	ATGAA	4 cut(s)	16, 90, 627, 774
TspGWI	ACGGA	1 cut(s)	938
TspRI	CASTG	3 cut(s)	438, 539, 589
Vha464I	CTTAAG	1 cut(s)	488
VspI	ATTAAT	1 cut(s)	566
XapI	RAATTY	3 cut(s)	469, 762, 861
XspI	CTAG	2 cut(s)	543, 1007
ZrmI	AGTACT	1 cut(s)	1005

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.