Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017071.1

Orthogroup ID

OG0011302

Physical Location & Seq

Genomic Coordinates Reverse (-)

12515 .. 19366

Gene Structure 6852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017071.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

atgacaaatgagacagcttggttcaaacccattggggctgtagtggctgaaaagcttgcggaacgaatcttcgattggtacaacataatgaacagggactcgagggctgatgctggggaggaaggtgcccaaactctcccatccgctgaaaattatccatatatcgaagtgataaaaggaagacatcactcatcagcgctctgtctcccgccacaaagcttccctccaatggcttcctcttcctcctccttctctctttctctgtccctacaacctcctcgatgctcttatcaccgacacccggtacattgctttggcataagcttttctttgctaaagaattgggatgtgatggtttcgggcatgtggaggccgaggccattccgttcggccaatttgatggactgtaagaagaggagaactttgatctgtgcagtcaatcaagatgctgaggaagcattcaaaaagactgtagaagtcgataggctgatagacaaattgagggatgcaaatccaattgaacttcagaagcttgttgttgaaaatgtgttggcatttaacgagggcttttggatacggcttgcagcaagaactgatacctgcaaatcagaagatgataaaaaagattatgaggaattggctatatcaataatgagcatagtggatcgccttgttcacaagaccaatgaaaagataaattcagctactgatgtcctcaaggggattctgaaacctatagttgatgatgttgtagaaattcagtggcctcctagagatcctgagtctcttaaattaatggagaaagaaatcaccgaaagggaacaagaagggctactggatgaaggcttcctttcagaagttaatgctcaactaagacaagcaaaagaagatggagataagccagggcttgaggctatgttacaaaaggttttgcaactctatgcttctaaagttctatccaaacgtagttatgcaaagaaaggggacgaaattctgaaggccgaggagtttcttgaaaccataattaaagctcctgaggaagaatggaacaagctattgctcgatggattgtcaattggcaaaggtgaaattccaccacaggacctctatgctgtcataaagaaaaggattgaacggactctgatccgaacggagggtggttcttaccagcagcgtgttctttctgagtatctgaacggcattcaatcgagagcagagcaagttgtccaagtgctagagggcaaggctcagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

417

Amino Acids

47.37

Weight (kDa)

5.66

Isoelectric Point (pI)

46.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21385 AT2G21385 AT2G21385 AT2G21385 AT2G21385
fragaria_vesca	FvH4_2g10050
malus_domestica	MD10G1066100.v1.1
prunus_persica	Prupe.8G088000_v2.0.a1 Prupe.8G088000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0266981
rosa_laevigata	RLG00000014054
rosa_multiflora	Rmu_sc0011492.1_g000003 Rmu_sc0017071.1_g000006
rosa_roxburghii	Rroxscaffold_7G00201240
rosa_rugosa	Rorug06G0028400
rosa_samantha	Rh6AG149800 Rh6BG150700 Rh6CG145800 Rh6DG134800
rosa_wichuraiana	Rw6G012970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	608
AccB1I	GGYRCC	1 cut(s)	125
AciI	CCGC	3 cut(s)	59, 144, 209
AclWI	GGATC	3 cut(s)	672, 770, 1138
AcoI	YGGCCR	1 cut(s)	390
AcsI	RAATTY	4 cut(s)	697, 756, 990, 1089
AcuI	CTGAAG	2 cut(s)	509, 1016
AfaI	GTAC	2 cut(s)	80, 306
AfeI	AGCGCT	1 cut(s)	198
AfiI	CCNNNNNNNGG	3 cut(s)	229, 301, 1153
AgsI	TTSAA	7 cut(s)	25, 463, 521, 542, 1016, 1133, 1205
AjnI	CCWGG	1 cut(s)	901
AjuI	GAANNNNNNNTTGG	2 cut(s)	58, 90
AluBI	AGCT	8 cut(s)	17, 55, 219, 324, 532, 704, 1031, 1054
AluI	AGCT	8 cut(s)	17, 55, 219, 324, 532, 704, 1031, 1054
Alw26I	GTCTC	3 cut(s)	5, 209, 789
AlwI	GGATC	3 cut(s)	672, 770, 1138
AlwNI	CAGNNNCTG	1 cut(s)	707
Ama87I	CYCGRG	1 cut(s)	100
Aor51HI	AGCGCT	1 cut(s)	198
AoxI	GGCC	5 cut(s)	371, 377, 390, 764, 999
ApeKI	GCWGC	2 cut(s)	584, 1171
ApoI	RAATTY	4 cut(s)	697, 756, 990, 1089
AseI	ATTAAT	1 cut(s)	794
AspLEI	GCGC	1 cut(s)	199
AspS9I	GGNCC	1 cut(s)	1102
AsuC2I	CCSGG	1 cut(s)	302
AsuHPI	GGTGA	3 cut(s)	284, 802, 1097
AvaI	CYCGRG	1 cut(s)	100
AvaII	GGWCC	1 cut(s)	1102
AxyI	CCTNAGG	1 cut(s)	1035
BaeGI	GKGCMC	1 cut(s)	130
BanI	GGYRCC	1 cut(s)	125
BbsI	GAAGAC	1 cut(s)	187
BbvCI	CCTCAGC	1 cut(s)	450
BbvI	GCAGC	2 cut(s)	596, 1183
BccI	CCATC	5 cut(s)	148, 346, 394, 884, 1058
BceAI	ACGGC	2 cut(s)	593, 1213
BciT130I	CCWGG	1 cut(s)	903
BciVI	GTATCC	1 cut(s)	567
BcnI	CCSGG	1 cut(s)	302
BcoDI	GTCTC	3 cut(s)	5, 209, 789
BfaI	CTAG	2 cut(s)	771, 1235
BfmI	CTRYAG	3 cut(s)	39, 471, 735
BfoI	RGCGCY	1 cut(s)	200
BfuAI	ACCTGC	1 cut(s)	608
BfuI	GTATCC	1 cut(s)	567
BisI	GCNGC	2 cut(s)	585, 1172
BlsI	GCNGC	2 cut(s)	586, 1173
Bme1390I	CCNGG	2 cut(s)	302, 903
Bme18I	GGWCC	1 cut(s)	1102
BmeT110I	CYCGRG	1 cut(s)	100
BmgT120I	GGNCC	1 cut(s)	1102
BmiI	GGNNCC	1 cut(s)	127
BmrFI	CCNGG	2 cut(s)	302, 903
BmsI	GCATC	4 cut(s)	100, 272, 436, 496
BpiI	GAAGAC	1 cut(s)	187
Bpu10I	CCTNAGC	1 cut(s)	450
BpuEI	CTTGAG	2 cut(s)	701, 929
BpuMI	CCSGG	1 cut(s)	302
BsaBI	GATNNNNATC	1 cut(s)	510
BsaJI	CCNNGG	3 cut(s)	374, 902, 1002
Bsc4I	CCNNNNNNNGG	3 cut(s)	229, 301, 1153
Bse1I	ACTGG	1 cut(s)	840
Bse21I	CCTNAGG	1 cut(s)	1035
Bse3DI	GCAATG	1 cut(s)	307
Bse8I	GATNNNNATC	1 cut(s)	510
BseBI	CCWGG	1 cut(s)	903
BseDI	CCNNGG	3 cut(s)	374, 902, 1002
BseGI	GGATG	4 cut(s)	140, 352, 511, 844
BseJI	GATNNNNATC	1 cut(s)	510
BseLI	CCNNNNNNNGG	3 cut(s)	229, 301, 1153
BseMI	GCAATG	1 cut(s)	307
BseMII	CTCAG	4 cut(s)	441, 771, 1026, 1176
BseNI	ACTGG	1 cut(s)	840
BseRI	GAGGAG	4 cut(s)	235, 267, 430, 1019
BseSI	GKGCMC	1 cut(s)	130
BseXI	GCAGC	2 cut(s)	596, 1183
BseYI	CCCAGC	1 cut(s)	113
BsgI	GTGCAG	1 cut(s)	453
BshFI	GGCC	5 cut(s)	373, 379, 392, 766, 1001
BshNI	GGYRCC	1 cut(s)	125
BsiHKCI	CYCGRG	1 cut(s)	100
BsiSI	CCGG	1 cut(s)	302
BslFI	GGGAC	3 cut(s)	110, 250, 998
BslI	CCNNNNNNNGG	3 cut(s)	229, 301, 1153
BsmAI	GTCTC	3 cut(s)	5, 209, 789
BsmFI	GGGAC	3 cut(s)	110, 250, 998
BsmI	GAATGC	2 cut(s)	458, 1200
BsnI	GGCC	5 cut(s)	373, 379, 392, 766, 1001
BsoBI	CYCGRG	1 cut(s)	100
Bsp1286I	GDGCHC	1 cut(s)	130
Bsp143I	GATC	4 cut(s)	426, 664, 775, 1143
BspACI	CCGC	3 cut(s)	59, 144, 209
BspANI	GGCC	5 cut(s)	373, 379, 392, 766, 1001
BspCNI	CTCAG	4 cut(s)	442, 772, 1027, 1177
BspLI	GGNNCC	1 cut(s)	127
BspMI	ACCTGC	1 cut(s)	608
BspPI	GGATC	3 cut(s)	672, 770, 1138
BspT107I	GGYRCC	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	307
BsrI	ACTGG	1 cut(s)	840
BssECI	CCNNGG	3 cut(s)	374, 902, 1002
BssMI	GATC	4 cut(s)	426, 664, 775, 1143
Bst2UI	CCWGG	1 cut(s)	903
Bst4CI	ACNGT	2 cut(s)	407, 472
Bst6I	CTCTTC	2 cut(s)	244, 407
BstC8I	GCNNGC	2 cut(s)	57, 582
BstDEI	CTNAG	6 cut(s)	450, 780, 872, 1035, 1185, 1248
BstF5I	GGATG	4 cut(s)	140, 352, 511, 844
BstH2I	RGCGCY	1 cut(s)	200
BstHHI	GCGC	1 cut(s)	199
BstKTI	GATC	4 cut(s)	429, 667, 778, 1146
BstMAI	GTCTC	3 cut(s)	5, 209, 789
BstMBI	GATC	4 cut(s)	426, 664, 775, 1143
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 455
BstNI	CCWGG	1 cut(s)	903
BstNSI	RCATGY	1 cut(s)	367
BstSCI	CCNGG	2 cut(s)	300, 901
BstSFI	CTRYAG	3 cut(s)	39, 471, 735
BstSLI	GKGCMC	1 cut(s)	130
BstV1I	GCAGC	2 cut(s)	596, 1183
BstV2I	GAAGAC	1 cut(s)	187
BstX2I	RGATCY	1 cut(s)	775
BstXI	CCANNNNNNTGG	1 cut(s)	400
BstYI	RGATCY	1 cut(s)	775
Bsu36I	CCTNAGG	1 cut(s)	1035
BsuI	GTATCC	1 cut(s)	567
BsuRI	GGCC	5 cut(s)	373, 379, 392, 766, 1001
BtsCI	GGATG	4 cut(s)	140, 352, 511, 844
BtsIMutI	CAGTG	1 cut(s)	767
BveI	ACCTGC	1 cut(s)	608
Cac8I	GCNNGC	2 cut(s)	57, 582
CaiI	CAGNNNCTG	1 cut(s)	707
CfoI	GCGC	1 cut(s)	199
Cfr13I	GGNCC	1 cut(s)	1102
Csp6I	GTAC	2 cut(s)	79, 305
CviAII	CATG	1 cut(s)	364
CviQI	GTAC	2 cut(s)	79, 305
DdeI	CTNAG	6 cut(s)	450, 780, 872, 1035, 1185, 1248
DpnI	GATC	4 cut(s)	428, 666, 777, 1145
DpnII	GATC	4 cut(s)	426, 664, 775, 1143
EaeI	YGGCCR	1 cut(s)	390
Eam1104I	CTCTTC	2 cut(s)	244, 407
EarI	CTCTTC	2 cut(s)	244, 407
Eco47I	GGWCC	1 cut(s)	1102
Eco47III	AGCGCT	1 cut(s)	198
Eco57I	CTGAAG	2 cut(s)	509, 1016
Eco81I	CCTNAGG	1 cut(s)	1035
Eco88I	CYCGRG	1 cut(s)	100
EcoO109I	RGGNCCY	1 cut(s)	1102
EcoRII	CCWGG	1 cut(s)	901
FaeI	CATG	1 cut(s)	367
FalI	AAGNNNNNCTT	4 cut(s)	313, 345, 834, 866
FaqI	GGGAC	3 cut(s)	110, 250, 998
FatI	CATG	1 cut(s)	363
FauI	CCCGC	1 cut(s)	216
Fnu4HI	GCNGC	2 cut(s)	585, 1172
FokI	GGATG	4 cut(s)	127, 359, 518, 851
Fsp4HI	GCNGC	2 cut(s)	585, 1172
FspBI	CTAG	2 cut(s)	771, 1235
GlaI	GCGC	1 cut(s)	198
GluI	GCNGC	2 cut(s)	585, 1172
GsaI	CCCAGC	1 cut(s)	117
HaeII	RGCGCY	1 cut(s)	200
HaeIII	GGCC	5 cut(s)	373, 379, 392, 766, 1001
HapII	CCGG	1 cut(s)	302
HhaI	GCGC	1 cut(s)	199
Hin1II	CATG	1 cut(s)	367
Hin6I	GCGC	1 cut(s)	197
HinP1I	GCGC	1 cut(s)	197
HindIII	AAGCTT	4 cut(s)	53, 217, 322, 530
HinfI	GANTC	5 cut(s)	66, 98, 724, 782, 1138
HpaII	CCGG	1 cut(s)	302
HphI	GGTGA	3 cut(s)	284, 802, 1097
Hpy166II	GTNNAC	1 cut(s)	676
Hpy188I	TCNGA	9 cut(s)	528, 610, 729, 856, 996, 1143, 1148, 1186, 1194
Hpy188III	TCNNGA	5 cut(s)	443, 779, 1013, 1034, 1209
Hpy8I	GTNNAC	1 cut(s)	676
HpyAV	CCTTC	5 cut(s)	116, 259, 821, 836, 991
HpyCH4III	ACNGT	2 cut(s)	407, 472
HpyCH4IV	ACGT	1 cut(s)	964
HpyCH4V	TGCA	6 cut(s)	434, 509, 584, 603, 934, 974
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 455
HpyF3I	CTNAG	6 cut(s)	450, 780, 872, 1035, 1185, 1248
HpySE526I	ACGT	1 cut(s)	964
Hsp92II	CATG	1 cut(s)	367
HspAI	GCGC	1 cut(s)	197
Kzo9I	GATC	4 cut(s)	426, 664, 775, 1143
LmnI	GCTCC	1 cut(s)	1036
Lsp1109I	GCAGC	2 cut(s)	596, 1183
LweI	GCATC	4 cut(s)	100, 272, 436, 496
MaeI	CTAG	2 cut(s)	771, 1235
MaeII	ACGT	1 cut(s)	964
MaeIII	GTNAC	1 cut(s)	918
MalI	GATC	4 cut(s)	428, 666, 777, 1145
MboI	GATC	4 cut(s)	426, 664, 775, 1143
MboII	GAAGA	7 cut(s)	61, 192, 231, 424, 623, 899, 1052
MfeI	CAATTG	2 cut(s)	516, 1074
MflI	RGATCY	1 cut(s)	775
MhlI	GDGCHC	1 cut(s)	130
MlyI	GAGTC	3 cut(s)	92, 791, 1132
MseI	TTAA	5 cut(s)	558, 789, 794, 861, 1026
MspA1I	CMGCKG	1 cut(s)	146
MspI	CCGG	1 cut(s)	302
MspR9I	CCNGG	2 cut(s)	302, 903
MunI	CAATTG	2 cut(s)	516, 1074
Mva1269I	GAATGC	2 cut(s)	458, 1200
MvaI	CCWGG	1 cut(s)	903
MwoI	GCNNNNNNNGC	2 cut(s)	44, 455
NciI	CCSGG	1 cut(s)	302
NdeII	GATC	4 cut(s)	426, 664, 775, 1143
NlaIII	CATG	1 cut(s)	367
NlaIV	GGNNCC	1 cut(s)	127
NmeAIII	GCCGAG	2 cut(s)	399, 1027
NspI	RCATGY	1 cut(s)	367
PaeR7I	CTCGAG	1 cut(s)	100
PctI	GAATGC	2 cut(s)	458, 1200
PfeI	GAWTC	2 cut(s)	66, 724
PkrI	GCNGC	2 cut(s)	586, 1173
PleI	GAGTC	3 cut(s)	92, 790, 1132
PpsI	GAGTC	3 cut(s)	92, 790, 1132
PpuMI	RGGWCCY	1 cut(s)	1102
PshBI	ATTAAT	1 cut(s)	794
Psp5II	RGGWCCY	1 cut(s)	1102
Psp6I	CCWGG	1 cut(s)	901
PspFI	CCCAGC	1 cut(s)	113
PspGI	CCWGG	1 cut(s)	901
PspN4I	GGNNCC	1 cut(s)	127
PspPI	GGNCC	1 cut(s)	1102
PspPPI	RGGWCCY	1 cut(s)	1102
PspXI	VCTCGAGB	1 cut(s)	100
PstNI	CAGNNNCTG	1 cut(s)	707
PsuI	RGATCY	1 cut(s)	775
RsaI	GTAC	2 cut(s)	80, 306
RsaNI	GTAC	2 cut(s)	79, 305
SaqAI	TTAA	5 cut(s)	558, 789, 794, 861, 1026
SatI	GCNGC	2 cut(s)	585, 1172
Sau3AI	GATC	4 cut(s)	426, 664, 775, 1143
Sau96I	GGNCC	1 cut(s)	1102
SchI	GAGTC	3 cut(s)	92, 791, 1132
ScrFI	CCNGG	2 cut(s)	302, 903
SduI	GDGCHC	1 cut(s)	130
SfaNI	GCATC	4 cut(s)	100, 272, 436, 496
SfcI	CTRYAG	3 cut(s)	39, 471, 735
Sfr274I	CTCGAG	1 cut(s)	100
SinI	GGWCC	1 cut(s)	1102
SlaI	CTCGAG	1 cut(s)	100
SmlI	CTYRAG	3 cut(s)	100, 716, 908
SmoI	CTYRAG	3 cut(s)	100, 716, 908
SsiI	CCGC	3 cut(s)	59, 144, 209
SspMI	CTAG	2 cut(s)	771, 1235
StyD4I	CCNGG	2 cut(s)	300, 901
TaaI	ACNGT	2 cut(s)	407, 472
TaiI	ACGT	1 cut(s)	967
TaqI	TCGA	7 cut(s)	72, 101, 165, 280, 480, 1062, 1208
TfiI	GAWTC	2 cut(s)	66, 724
Tru1I	TTAA	5 cut(s)	558, 789, 794, 861, 1026
Tru9I	TTAA	5 cut(s)	558, 789, 794, 861, 1026
TscAI	CASTG	1 cut(s)	767
TseI	GCWGC	2 cut(s)	584, 1171
TspDTI	ATGAA	3 cut(s)	104, 702, 855
TspGWI	ACGGA	3 cut(s)	374, 1150, 1166
TspRI	CASTG	1 cut(s)	767
VpaK11BI	GGWCC	1 cut(s)	1102
VspI	ATTAAT	1 cut(s)	794
XapI	RAATTY	4 cut(s)	697, 756, 990, 1089
XceI	RCATGY	1 cut(s)	367
XhoI	CTCGAG	1 cut(s)	100
XspI	CTAG	2 cut(s)	771, 1235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.