Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0011302

Physical Location & Seq

Genomic Coordinates Reverse (-)

24217408 .. 24223400

Gene Structure 5993 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG150700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGTCTCGGGGATGTGGAGGCCGAGGCCATTCCGTTCGGCCAATTTAATGGACTGTAAGAAGAGGAGAACTTTGATCTGTGCAGTCAATCAAGATGCTGAGGAAGCATTCAAAAAGACTGTAGAAGTCGATAGGCTGATAGACAAATTGAGGGATGCAAATCCAATTGAACTTCAGAAGCTTGTTGTTGAAAATGTGTTGGCATTTAACGAGGGCTTTTGGATACGGCTTGCAGCAAGAACTGATACCTGCAAATCAGAAGATGATAAAAAAGATTATGAGGAATTGGCTATATCAGTAATGAGCATAGTGGATCGCCTTGTTCACAAGACCAATGAAAAGATAAATTCAGCTACTGATGTCCTCAAGGGGATTCTGAAACCTATAGTTGATGATGTTGTAGAAATTCAGTGGCCTCCTAGAGATCCCGAGTCTCTTAAAATAATGGAGAAAGAAATCACCGAAAGGGAACAAGAAGGGCTACTGGATGAAGGCTTCCTTTCAGAAGTTAATGCTCAACTAAGACAAGCAAAAGAAGATGGAGATAAGCCAGGGCTTGAGGCTATGTTACAAAAGGTTTTGCAACTCTATGCTTCTAAAGTTCTATCCAAACGTAGTTATGCAAAGAAAGGGGATGAAATTCTGAAGGCCGAGGAGTTTCTTGAAACCATAATTAAAGCTCCTGAGGAAGAATGGAACAAGCTGTTGCTCGATGGATTGTCAATTGGCAAAGGTGAAATTCCACCACAGGACCTCTATGCTGTCATAAAGAAAAGGATTGAACGGACTCTGATCCGAACGGAGGGTGGTTCTTACCAGCAGCGTGTTCTTTCTGAGTATCTGAACGGCATTCAATCGAGAGCAGAGCAAGTTGTCCAAGTGCTAGAGGGCAAGGCTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

300

Amino Acids

34.25

Weight (kDa)

5.31

Isoelectric Point (pI)

44.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21385 AT2G21385 AT2G21385 AT2G21385 AT2G21385
fragaria_vesca	FvH4_2g10050
malus_domestica	MD10G1066100.v1.1
prunus_persica	Prupe.8G088000_v2.0.a1 Prupe.8G088000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0266981
rosa_laevigata	RLG00000014054
rosa_multiflora	Rmu_sc0011492.1_g000003 Rmu_sc0017071.1_g000006
rosa_roxburghii	Rroxscaffold_7G00201240
rosa_rugosa	Rorug06G0028400
rosa_samantha	Rh6AG149800 Rh6BG150700 Rh6CG145800 Rh6DG134800
rosa_wichuraiana	Rw6G012970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	257
AclWI	GGATC	3 cut(s)	321, 419, 787
AcoI	YGGCCR	1 cut(s)	39
AcsI	RAATTY	4 cut(s)	346, 405, 639, 738
AcuI	CTGAAG	2 cut(s)	158, 665
AfiI	CCNNNNNNNGG	1 cut(s)	802
AgsI	TTSAA	6 cut(s)	112, 170, 191, 665, 782, 854
AjnI	CCWGG	1 cut(s)	550
AluBI	AGCT	4 cut(s)	181, 353, 680, 703
AluI	AGCT	4 cut(s)	181, 353, 680, 703
Alw26I	GTCTC	2 cut(s)	10, 438
AlwI	GGATC	3 cut(s)	321, 419, 787
AlwNI	CAGNNNCTG	1 cut(s)	356
Ama87I	CYCGRG	2 cut(s)	7, 428
AoxI	GGCC	5 cut(s)	20, 26, 39, 413, 648
ApeKI	GCWGC	2 cut(s)	233, 820
ApoI	RAATTY	4 cut(s)	346, 405, 639, 738
AspS9I	GGNCC	1 cut(s)	751
AsuHPI	GGTGA	2 cut(s)	451, 746
AvaI	CYCGRG	2 cut(s)	7, 428
AvaII	GGWCC	1 cut(s)	751
AxyI	CCTNAGG	1 cut(s)	684
BbvCI	CCTCAGC	1 cut(s)	99
BbvI	GCAGC	2 cut(s)	245, 832
BccI	CCATC	2 cut(s)	533, 707
BceAI	ACGGC	2 cut(s)	242, 862
BciT130I	CCWGG	1 cut(s)	552
BciVI	GTATCC	1 cut(s)	216
BcoDI	GTCTC	2 cut(s)	10, 438
BfaI	CTAG	2 cut(s)	420, 884
BfmI	CTRYAG	2 cut(s)	120, 384
BfuAI	ACCTGC	1 cut(s)	257
BfuI	GTATCC	1 cut(s)	216
BisI	GCNGC	2 cut(s)	234, 821
BlsI	GCNGC	2 cut(s)	235, 822
Bme1390I	CCNGG	1 cut(s)	552
Bme18I	GGWCC	1 cut(s)	751
BmeT110I	CYCGRG	2 cut(s)	7, 428
BmgT120I	GGNCC	1 cut(s)	751
BmrFI	CCNGG	1 cut(s)	552
BmsI	GCATC	2 cut(s)	85, 145
Bpu10I	CCTNAGC	1 cut(s)	99
BpuEI	CTTGAG	2 cut(s)	350, 578
BsaBI	GATNNNNATC	1 cut(s)	159
BsaI	GGTCTC	1 cut(s)	10
BsaJI	CCNNGG	3 cut(s)	23, 551, 651
Bsc4I	CCNNNNNNNGG	1 cut(s)	802
Bse1I	ACTGG	1 cut(s)	489
Bse21I	CCTNAGG	1 cut(s)	684
Bse8I	GATNNNNATC	1 cut(s)	159
BseBI	CCWGG	1 cut(s)	552
BseDI	CCNNGG	3 cut(s)	23, 551, 651
BseGI	GGATG	4 cut(s)	18, 160, 493, 640
BseJI	GATNNNNATC	1 cut(s)	159
BseLI	CCNNNNNNNGG	1 cut(s)	802
BseMII	CTCAG	3 cut(s)	90, 675, 825
BseNI	ACTGG	1 cut(s)	489
BseRI	GAGGAG	2 cut(s)	79, 668
BseXI	GCAGC	2 cut(s)	245, 832
BsgI	GTGCAG	1 cut(s)	102
BshFI	GGCC	5 cut(s)	22, 28, 41, 415, 650
BsiHKCI	CYCGRG	2 cut(s)	7, 428
BslI	CCNNNNNNNGG	1 cut(s)	802
BsmAI	GTCTC	2 cut(s)	10, 438
BsmI	GAATGC	2 cut(s)	107, 849
BsnI	GGCC	5 cut(s)	22, 28, 41, 415, 650
Bso31I	GGTCTC	1 cut(s)	10
BsoBI	CYCGRG	2 cut(s)	7, 428
Bsp143I	GATC	4 cut(s)	75, 313, 424, 792
BspANI	GGCC	5 cut(s)	22, 28, 41, 415, 650
BspCNI	CTCAG	3 cut(s)	91, 676, 826
BspMI	ACCTGC	1 cut(s)	257
BspPI	GGATC	3 cut(s)	321, 419, 787
BspTNI	GGTCTC	1 cut(s)	10
BsrI	ACTGG	1 cut(s)	489
BssECI	CCNNGG	3 cut(s)	23, 551, 651
BssMI	GATC	4 cut(s)	75, 313, 424, 792
Bst2UI	CCWGG	1 cut(s)	552
Bst4CI	ACNGT	2 cut(s)	56, 121
Bst6I	CTCTTC	1 cut(s)	56
BstC8I	GCNNGC	1 cut(s)	231
BstDEI	CTNAG	5 cut(s)	99, 521, 684, 834, 897
BstF5I	GGATG	4 cut(s)	18, 160, 493, 640
BstKTI	GATC	4 cut(s)	78, 316, 427, 795
BstMAI	GTCTC	2 cut(s)	10, 438
BstMBI	GATC	4 cut(s)	75, 313, 424, 792
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BstNI	CCWGG	1 cut(s)	552
BstSCI	CCNGG	1 cut(s)	550
BstSFI	CTRYAG	2 cut(s)	120, 384
BstV1I	GCAGC	2 cut(s)	245, 832
BstX2I	RGATCY	1 cut(s)	424
BstXI	CCANNNNNNTGG	1 cut(s)	49
BstYI	RGATCY	1 cut(s)	424
Bsu36I	CCTNAGG	1 cut(s)	684
BsuI	GTATCC	1 cut(s)	216
BsuRI	GGCC	5 cut(s)	22, 28, 41, 415, 650
BtsCI	GGATG	4 cut(s)	18, 160, 493, 640
BtsIMutI	CAGTG	1 cut(s)	416
BveI	ACCTGC	1 cut(s)	257
Cac8I	GCNNGC	1 cut(s)	231
CaiI	CAGNNNCTG	1 cut(s)	356
Cfr13I	GGNCC	1 cut(s)	751
DdeI	CTNAG	5 cut(s)	99, 521, 684, 834, 897
DpnI	GATC	4 cut(s)	77, 315, 426, 794
DpnII	GATC	4 cut(s)	75, 313, 424, 792
EaeI	YGGCCR	1 cut(s)	39
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
Eco31I	GGTCTC	1 cut(s)	10
Eco47I	GGWCC	1 cut(s)	751
Eco57I	CTGAAG	2 cut(s)	158, 665
Eco81I	CCTNAGG	1 cut(s)	684
Eco88I	CYCGRG	2 cut(s)	7, 428
EcoO109I	RGGNCCY	1 cut(s)	751
EcoRII	CCWGG	1 cut(s)	550
FalI	AAGNNNNNCTT	2 cut(s)	483, 515
Fnu4HI	GCNGC	2 cut(s)	234, 821
FokI	GGATG	4 cut(s)	25, 167, 500, 647
Fsp4HI	GCNGC	2 cut(s)	234, 821
FspBI	CTAG	2 cut(s)	420, 884
GluI	GCNGC	2 cut(s)	234, 821
HaeIII	GGCC	5 cut(s)	22, 28, 41, 415, 650
HindIII	AAGCTT	1 cut(s)	179
HinfI	GANTC	3 cut(s)	373, 431, 787
HphI	GGTGA	2 cut(s)	451, 746
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	9 cut(s)	177, 259, 378, 505, 645, 792, 797, 835, 843
Hpy188III	TCNNGA	5 cut(s)	92, 428, 662, 683, 858
Hpy8I	GTNNAC	1 cut(s)	325
HpyAV	CCTTC	3 cut(s)	470, 485, 640
HpyCH4III	ACNGT	2 cut(s)	56, 121
HpyCH4IV	ACGT	1 cut(s)	613
HpyCH4V	TGCA	6 cut(s)	83, 158, 233, 252, 583, 623
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
HpyF3I	CTNAG	5 cut(s)	99, 521, 684, 834, 897
HpySE526I	ACGT	1 cut(s)	613
Kzo9I	GATC	4 cut(s)	75, 313, 424, 792
LmnI	GCTCC	1 cut(s)	685
LpnPI	CCDG	7 cut(s)	262, 470, 537, 564, 696, 734, 830
Lsp1109I	GCAGC	2 cut(s)	245, 832
LweI	GCATC	2 cut(s)	85, 145
MaeI	CTAG	2 cut(s)	420, 884
MaeII	ACGT	1 cut(s)	613
MaeIII	GTNAC	1 cut(s)	567
MalI	GATC	4 cut(s)	77, 315, 426, 794
MboI	GATC	4 cut(s)	75, 313, 424, 792
MboII	GAAGA	4 cut(s)	73, 272, 548, 701
MfeI	CAATTG	2 cut(s)	165, 723
MflI	RGATCY	1 cut(s)	424
MlyI	GAGTC	2 cut(s)	440, 781
MseI	TTAA	5 cut(s)	47, 207, 438, 510, 675
MspR9I	CCNGG	1 cut(s)	552
MunI	CAATTG	2 cut(s)	165, 723
Mva1269I	GAATGC	2 cut(s)	107, 849
MvaI	CCWGG	1 cut(s)	552
MwoI	GCNNNNNNNGC	1 cut(s)	104
NdeII	GATC	4 cut(s)	75, 313, 424, 792
NmeAIII	GCCGAG	2 cut(s)	48, 676
PctI	GAATGC	2 cut(s)	107, 849
PfeI	GAWTC	1 cut(s)	373
PkrI	GCNGC	2 cut(s)	235, 822
PleI	GAGTC	2 cut(s)	439, 781
PpsI	GAGTC	2 cut(s)	439, 781
PpuMI	RGGWCCY	1 cut(s)	751
Psp5II	RGGWCCY	1 cut(s)	751
Psp6I	CCWGG	1 cut(s)	550
PspGI	CCWGG	1 cut(s)	550
PspPI	GGNCC	1 cut(s)	751
PspPPI	RGGWCCY	1 cut(s)	751
PstNI	CAGNNNCTG	1 cut(s)	356
PsuI	RGATCY	1 cut(s)	424
SaqAI	TTAA	5 cut(s)	47, 207, 438, 510, 675
SatI	GCNGC	2 cut(s)	234, 821
Sau3AI	GATC	4 cut(s)	75, 313, 424, 792
Sau96I	GGNCC	1 cut(s)	751
SchI	GAGTC	2 cut(s)	440, 781
ScrFI	CCNGG	1 cut(s)	552
SfaNI	GCATC	2 cut(s)	85, 145
SfcI	CTRYAG	2 cut(s)	120, 384
SinI	GGWCC	1 cut(s)	751
SmlI	CTYRAG	2 cut(s)	365, 557
SmoI	CTYRAG	2 cut(s)	365, 557
SspMI	CTAG	2 cut(s)	420, 884
StyD4I	CCNGG	1 cut(s)	550
TaaI	ACNGT	2 cut(s)	56, 121
TaiI	ACGT	1 cut(s)	616
TaqI	TCGA	3 cut(s)	129, 711, 857
TfiI	GAWTC	1 cut(s)	373
Tru1I	TTAA	5 cut(s)	47, 207, 438, 510, 675
Tru9I	TTAA	5 cut(s)	47, 207, 438, 510, 675
TscAI	CASTG	1 cut(s)	416
TseI	GCWGC	2 cut(s)	233, 820
TspDTI	ATGAA	3 cut(s)	351, 504, 651
TspGWI	ACGGA	3 cut(s)	23, 799, 815
TspRI	CASTG	1 cut(s)	416
VpaK11BI	GGWCC	1 cut(s)	751
XapI	RAATTY	4 cut(s)	346, 405, 639, 738
XspI	CTAG	2 cut(s)	420, 884

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.