Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0011302

Physical Location & Seq

Genomic Coordinates Reverse (-)

23559431 .. 23565817

Gene Structure 6387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG149800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGCTTCCTCTCCCTCCTCCTTCTCTCTTTCTCTGTCCCTACAACCTCCTCGATGCTCTTATCACCGACGCCCGGTACATTGCTTTGGCATAAGCTTTTCTTTGCTAAAGAATTGGGATGTGATGGTTTCGGGCATGTGGAGGCCGAGGCCATTCCGTTCGGCCAATTTGATGGACTGTAAGAAGAGGAGAACTTTGATCTGTGCAGTCAATCAAGATGCTGAGGAAGCATTCAAAAAGACTGTAGAAGTCGATAGGCTGATAGACAAATTGAGGGATGCAAATCCAATTGAACTTCAGAAGCTTGTTGTTGAAAATGTGTTGGCATTTAACGAGGGCTTTTGGATACGTCTTGCAGCAAGAACTGATACCTGCAAATCAGAAGATGATAAAAAAGATTATGAGGAATTGGCTATATCAATAATGAGCATAGTGGATCGCCTTGTTCACAAGACCAATGAAAAGATAAATTCAGCTACTGATGTCCTCAAGGGGATTCTGAAACCTATAGTTGATGATGTTGTAGAAATTCAGTGGCCTCCTAGAGATCCTGAGTCTCTTAAATTAATGGAGAAAGAAATCACCGAAAGGGAACAAGAAGGGCTACTGGATGAAGGCTTCCTTTCAGAAGTTAATGCTCAACTAAGACAAGCAAAAGAAGATGGAGATAAGCCAGGGCTTGAGGCTATGTTACAAAAGGTTTTGCAACTCTATGCTTCTAAAGTTCTATCCAAACGTAGTTATGCAAAGAAAGGTAATGCAGCTTCCACATTGTGTTTTTACATCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

263

Amino Acids

29.98

Weight (kDa)

7.56

Isoelectric Point (pI)

44.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21385 AT2G21385 AT2G21385 AT2G21385 AT2G21385
fragaria_vesca	FvH4_2g10050
malus_domestica	MD10G1066100.v1.1
prunus_persica	Prupe.8G088000_v2.0.a1 Prupe.8G088000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0266981
rosa_laevigata	RLG00000014054
rosa_multiflora	Rmu_sc0011492.1_g000003 Rmu_sc0017071.1_g000006
rosa_roxburghii	Rroxscaffold_7G00201240
rosa_rugosa	Rorug06G0028400
rosa_samantha	Rh6AG149800 Rh6BG150700 Rh6CG145800 Rh6DG134800
rosa_wichuraiana	Rw6G012970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	380
AclWI	GGATC	2 cut(s)	444, 542
AcoI	YGGCCR	1 cut(s)	162
AcsI	RAATTY	2 cut(s)	469, 528
AcuI	CTGAAG	1 cut(s)	281
AcyI	GRCGYC	1 cut(s)	70
AdeI	CACNNNGTG	1 cut(s)	774
AfaI	GTAC	1 cut(s)	78
AfiI	CCNNNNNNNGG	1 cut(s)	73
AgsI	TTSAA	3 cut(s)	235, 293, 314
AjnI	CCWGG	1 cut(s)	673
AluBI	AGCT	4 cut(s)	96, 304, 476, 764
AluI	AGCT	4 cut(s)	96, 304, 476, 764
Alw26I	GTCTC	1 cut(s)	561
AlwI	GGATC	2 cut(s)	444, 542
AlwNI	CAGNNNCTG	1 cut(s)	479
AoxI	GGCC	4 cut(s)	143, 149, 162, 536
ApeKI	GCWGC	2 cut(s)	356, 761
ApoI	RAATTY	2 cut(s)	469, 528
AseI	ATTAAT	1 cut(s)	566
AsuC2I	CCSGG	1 cut(s)	74
AsuHPI	GGTGA	2 cut(s)	56, 574
BarI	GAAGNNNNNNTAC	2 cut(s)	748, 780
BbvCI	CCTCAGC	1 cut(s)	222
BbvI	GCAGC	2 cut(s)	368, 773
BccI	CCATC	3 cut(s)	118, 166, 656
BciT130I	CCWGG	1 cut(s)	675
BciVI	GTATCC	1 cut(s)	339
BcnI	CCSGG	1 cut(s)	74
BcoDI	GTCTC	1 cut(s)	561
BfaI	CTAG	1 cut(s)	543
BfmI	CTRYAG	2 cut(s)	243, 507
BfuAI	ACCTGC	1 cut(s)	380
BfuI	GTATCC	1 cut(s)	339
BisI	GCNGC	2 cut(s)	357, 762
BlsI	GCNGC	2 cut(s)	358, 763
Bme1390I	CCNGG	2 cut(s)	74, 675
BmrFI	CCNGG	2 cut(s)	74, 675
BmsI	GCATC	3 cut(s)	44, 208, 268
Bpu10I	CCTNAGC	1 cut(s)	222
BpuEI	CTTGAG	2 cut(s)	473, 701
BpuMI	CCSGG	1 cut(s)	74
BsaBI	GATNNNNATC	1 cut(s)	282
BsaHI	GRCGYC	1 cut(s)	70
BsaJI	CCNNGG	2 cut(s)	146, 674
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
Bse1I	ACTGG	1 cut(s)	612
Bse3DI	GCAATG	1 cut(s)	79
Bse8I	GATNNNNATC	1 cut(s)	282
BseBI	CCWGG	1 cut(s)	675
BseDI	CCNNGG	2 cut(s)	146, 674
BseGI	GGATG	3 cut(s)	124, 283, 616
BseJI	GATNNNNATC	1 cut(s)	282
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseMI	GCAATG	1 cut(s)	79
BseMII	CTCAG	2 cut(s)	213, 543
BseNI	ACTGG	1 cut(s)	612
BseRI	GAGGAG	3 cut(s)	7, 39, 202
BseXI	GCAGC	2 cut(s)	368, 773
BsgI	GTGCAG	1 cut(s)	225
BshFI	GGCC	4 cut(s)	145, 151, 164, 538
BsiSI	CCGG	1 cut(s)	74
BslFI	GGGAC	1 cut(s)	22
BslI	CCNNNNNNNGG	1 cut(s)	73
BsmAI	GTCTC	1 cut(s)	561
BsmFI	GGGAC	1 cut(s)	22
BsmI	GAATGC	1 cut(s)	230
BsnI	GGCC	4 cut(s)	145, 151, 164, 538
Bsp143I	GATC	3 cut(s)	198, 436, 547
BspANI	GGCC	4 cut(s)	145, 151, 164, 538
BspCNI	CTCAG	2 cut(s)	214, 544
BspMI	ACCTGC	1 cut(s)	380
BspPI	GGATC	2 cut(s)	444, 542
BsrDI	GCAATG	1 cut(s)	79
BsrI	ACTGG	1 cut(s)	612
BssECI	CCNNGG	2 cut(s)	146, 674
BssMI	GATC	3 cut(s)	198, 436, 547
BssNI	GRCGYC	1 cut(s)	70
Bst2UI	CCWGG	1 cut(s)	675
Bst4CI	ACNGT	2 cut(s)	179, 244
Bst6I	CTCTTC	1 cut(s)	179
BstACI	GRCGYC	1 cut(s)	70
BstDEI	CTNAG	3 cut(s)	222, 552, 644
BstF5I	GGATG	3 cut(s)	124, 283, 616
BstKTI	GATC	3 cut(s)	201, 439, 550
BstMAI	GTCTC	1 cut(s)	561
BstMBI	GATC	3 cut(s)	198, 436, 547
BstMWI	GCNNNNNNNGC	1 cut(s)	227
BstNI	CCWGG	1 cut(s)	675
BstNSI	RCATGY	1 cut(s)	139
BstSCI	CCNGG	2 cut(s)	72, 673
BstSFI	CTRYAG	2 cut(s)	243, 507
BstV1I	GCAGC	2 cut(s)	368, 773
BstX2I	RGATCY	1 cut(s)	547
BstXI	CCANNNNNNTGG	1 cut(s)	172
BstYI	RGATCY	1 cut(s)	547
BsuI	GTATCC	1 cut(s)	339
BsuRI	GGCC	4 cut(s)	145, 151, 164, 538
BtsCI	GGATG	3 cut(s)	124, 283, 616
BtsIMutI	CAGTG	1 cut(s)	539
BveI	ACCTGC	1 cut(s)	380
CaiI	CAGNNNCTG	1 cut(s)	479
CseI	GACGC	1 cut(s)	78
Csp6I	GTAC	1 cut(s)	77
CviAII	CATG	1 cut(s)	136
CviQI	GTAC	1 cut(s)	77
DdeI	CTNAG	3 cut(s)	222, 552, 644
DpnI	GATC	3 cut(s)	200, 438, 549
DpnII	GATC	3 cut(s)	198, 436, 547
DraIII	CACNNNGTG	1 cut(s)	774
EaeI	YGGCCR	1 cut(s)	162
Eam1104I	CTCTTC	1 cut(s)	179
EarI	CTCTTC	1 cut(s)	179
Eco57I	CTGAAG	1 cut(s)	281
EcoRII	CCWGG	1 cut(s)	673
FaeI	CATG	1 cut(s)	139
FalI	AAGNNNNNCTT	4 cut(s)	85, 117, 606, 638
FaqI	GGGAC	1 cut(s)	22
FatI	CATG	1 cut(s)	135
Fnu4HI	GCNGC	2 cut(s)	357, 762
FokI	GGATG	3 cut(s)	131, 290, 623
Fsp4HI	GCNGC	2 cut(s)	357, 762
FspBI	CTAG	1 cut(s)	543
GluI	GCNGC	2 cut(s)	357, 762
HaeIII	GGCC	4 cut(s)	145, 151, 164, 538
HapII	CCGG	1 cut(s)	74
HgaI	GACGC	1 cut(s)	78
Hin1I	GRCGYC	1 cut(s)	70
Hin1II	CATG	1 cut(s)	139
HindIII	AAGCTT	2 cut(s)	94, 302
HinfI	GANTC	2 cut(s)	496, 554
HpaII	CCGG	1 cut(s)	74
HphI	GGTGA	2 cut(s)	56, 574
Hpy166II	GTNNAC	1 cut(s)	448
Hpy188I	TCNGA	4 cut(s)	300, 382, 501, 628
Hpy188III	TCNNGA	2 cut(s)	215, 551
Hpy8I	GTNNAC	1 cut(s)	448
Hpy99I	CGWCG	1 cut(s)	72
HpyAV	CCTTC	3 cut(s)	31, 593, 608
HpyCH4III	ACNGT	2 cut(s)	179, 244
HpyCH4IV	ACGT	2 cut(s)	349, 736
HpyCH4V	TGCA	7 cut(s)	206, 281, 356, 375, 706, 746, 761
HpyF10VI	GCNNNNNNNGC	1 cut(s)	227
HpyF3I	CTNAG	3 cut(s)	222, 552, 644
HpySE526I	ACGT	2 cut(s)	349, 736
Hsp92I	GRCGYC	1 cut(s)	70
Hsp92II	CATG	1 cut(s)	139
Kzo9I	GATC	3 cut(s)	198, 436, 547
LpnPI	CCDG	6 cut(s)	87, 385, 564, 593, 660, 687
Lsp1109I	GCAGC	2 cut(s)	368, 773
LweI	GCATC	3 cut(s)	44, 208, 268
MaeI	CTAG	1 cut(s)	543
MaeII	ACGT	2 cut(s)	349, 736
MaeIII	GTNAC	1 cut(s)	690
MalI	GATC	3 cut(s)	200, 438, 549
MboI	GATC	3 cut(s)	198, 436, 547
MboII	GAAGA	3 cut(s)	196, 395, 671
MfeI	CAATTG	1 cut(s)	288
MflI	RGATCY	1 cut(s)	547
MluCI	AATT	8 cut(s)	112, 166, 269, 288, 407, 469, 528, 563
MlyI	GAGTC	1 cut(s)	563
MseI	TTAA	4 cut(s)	330, 561, 566, 633
MspI	CCGG	1 cut(s)	74
MspR9I	CCNGG	2 cut(s)	74, 675
MunI	CAATTG	1 cut(s)	288
Mva1269I	GAATGC	1 cut(s)	230
MvaI	CCWGG	1 cut(s)	675
MwoI	GCNNNNNNNGC	1 cut(s)	227
NciI	CCSGG	1 cut(s)	74
NdeII	GATC	3 cut(s)	198, 436, 547
NlaIII	CATG	1 cut(s)	139
NmeAIII	GCCGAG	1 cut(s)	171
NspI	RCATGY	1 cut(s)	139
PctI	GAATGC	1 cut(s)	230
PfeI	GAWTC	1 cut(s)	496
PkrI	GCNGC	2 cut(s)	358, 763
PleI	GAGTC	1 cut(s)	562
PpsI	GAGTC	1 cut(s)	562
PshBI	ATTAAT	1 cut(s)	566
Psp6I	CCWGG	1 cut(s)	673
PspGI	CCWGG	1 cut(s)	673
PstNI	CAGNNNCTG	1 cut(s)	479
PsuI	RGATCY	1 cut(s)	547
RsaI	GTAC	1 cut(s)	78
RsaNI	GTAC	1 cut(s)	77
SaqAI	TTAA	4 cut(s)	330, 561, 566, 633
SatI	GCNGC	2 cut(s)	357, 762
Sau3AI	GATC	3 cut(s)	198, 436, 547
SchI	GAGTC	1 cut(s)	563
ScrFI	CCNGG	2 cut(s)	74, 675
SfaNI	GCATC	3 cut(s)	44, 208, 268
SfcI	CTRYAG	2 cut(s)	243, 507
SmlI	CTYRAG	2 cut(s)	488, 680
SmoI	CTYRAG	2 cut(s)	488, 680
Sse9I	AATT	8 cut(s)	112, 166, 269, 288, 407, 469, 528, 563
SspMI	CTAG	1 cut(s)	543
StyD4I	CCNGG	2 cut(s)	72, 673
TaaI	ACNGT	2 cut(s)	179, 244
TaiI	ACGT	2 cut(s)	352, 739
TaqI	TCGA	2 cut(s)	52, 252
TasI	AATT	8 cut(s)	112, 166, 269, 288, 407, 469, 528, 563
TfiI	GAWTC	1 cut(s)	496
Tru1I	TTAA	4 cut(s)	330, 561, 566, 633
Tru9I	TTAA	4 cut(s)	330, 561, 566, 633
TscAI	CASTG	1 cut(s)	539
TseI	GCWGC	2 cut(s)	356, 761
TspDTI	ATGAA	2 cut(s)	474, 627
TspGWI	ACGGA	1 cut(s)	146
TspRI	CASTG	1 cut(s)	539
VspI	ATTAAT	1 cut(s)	566
XapI	RAATTY	2 cut(s)	469, 528
XceI	RCATGY	1 cut(s)	139
XspI	CTAG	1 cut(s)	543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.