Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0011302

Physical Location & Seq

Genomic Coordinates Reverse (-)

23951893 .. 23958107

Gene Structure 6215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G012970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGCTTCCTCTCCCTCCTCCTTCTCTCTTTCTCTGTCCCTACAACCTCCTCGATGCTCTTATCACCGACACCCGGTACATTGCTTTGGCATAAGCTTTTCTTTGCTAAAGAATTGGGATGTGATGGTTTCGGGCATGTGGAGGCCGAGGCCATTCCGTTCGGCCAATTTGATGGACTGTAAGAAGAGGAGAACTTTGATCTGTGCAGTCAATCAAGATGCTGAGGAAGCATTCAAAAAGACTGTAGAAGTCGATAGGCTGATAGACAAATTGAGGGATGCAAATCCAATTGAACTTCAGAAGCTTGTTGTTGAAAATGTGTTGGCATTTAACGAGGGCTTTTGGATACGGCTTGCAGCAAGAACTGATACCTGCAAATCAGAAGATGATAAAAAAGATTATGAGGAATTGGCTATATCAGTAATGAGCATAGTGGATCGCCTTGTTCACAAGACCAATGAAAAGATAAATTCAGCTACTGATGTCCTCAAGGGGATTCTGAAACCTATAGTTGATGATGTTGTAGAAATTCAGTGGCCTCCTAGAGATCCTGAGTCTCTTAAATTAATGGAGAAAGAAATCACCGAAAGGGAACAAGAAGGGCTACTGGATGAAGGCTTCCTTTCAGAAGTTAATGCTCAACTAAGACAAGCAAAAGAAGATGGAGATAAGCCAGGGCTTGAGGCTATGTTACAAAAGGTTTTGCAACTCTACGCTTCTAAAGTTCTATCCAAACGTAGTTATGCAAAGAAAGGGGATGAAATTCTGAAGTCCGAGGAGTTTCTTGAAACCATAATTAAAGCTCCTGAGGAAGAATGGAACAAGCTGTTGCTCGATGGATTGTCAATTGGCAAAGGTGAAATTCCACCACAGGACCTCTATGCTGTCATAAAGAAAAGGATTGAACGGACTCTGATTCGAACGGAGGGTGGTTCTTACCAGCAGCGTGTTCTTTCTGAGTATCTGAACGGCATTCAATCGAGAGCAGAGCAAGTTGTCCAAGTGCTAGAGAGCAAGGCTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

341

Amino Acids

38.9

Weight (kDa)

5.83

Isoelectric Point (pI)

47.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21385 AT2G21385 AT2G21385 AT2G21385 AT2G21385
fragaria_vesca	FvH4_2g10050
malus_domestica	MD10G1066100.v1.1
prunus_persica	Prupe.8G088000_v2.0.a1 Prupe.8G088000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0266981
rosa_laevigata	RLG00000014054
rosa_multiflora	Rmu_sc0011492.1_g000003 Rmu_sc0017071.1_g000006
rosa_roxburghii	Rroxscaffold_7G00201240
rosa_rugosa	Rorug06G0028400
rosa_samantha	Rh6AG149800 Rh6BG150700 Rh6CG145800 Rh6DG134800
rosa_wichuraiana	Rw6G012970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	380
AclWI	GGATC	2 cut(s)	444, 542
AcoI	YGGCCR	1 cut(s)	162
AcsI	RAATTY	4 cut(s)	469, 528, 762, 861
AcuI	CTGAAG	2 cut(s)	281, 788
AfaI	GTAC	1 cut(s)	78
AfiI	CCNNNNNNNGG	1 cut(s)	73
AgsI	TTSAA	6 cut(s)	235, 293, 314, 788, 905, 977
AjnI	CCWGG	1 cut(s)	673
AluBI	AGCT	5 cut(s)	96, 304, 476, 803, 826
AluI	AGCT	5 cut(s)	96, 304, 476, 803, 826
Alw26I	GTCTC	1 cut(s)	561
AlwI	GGATC	2 cut(s)	444, 542
AlwNI	CAGNNNCTG	1 cut(s)	479
AoxI	GGCC	4 cut(s)	143, 149, 162, 536
ApeKI	GCWGC	2 cut(s)	356, 943
ApoI	RAATTY	4 cut(s)	469, 528, 762, 861
AseI	ATTAAT	1 cut(s)	566
AspS9I	GGNCC	1 cut(s)	874
AsuC2I	CCSGG	1 cut(s)	74
AsuHPI	GGTGA	3 cut(s)	56, 574, 869
AsuII	TTCGAA	1 cut(s)	919
AvaII	GGWCC	1 cut(s)	874
AxyI	CCTNAGG	1 cut(s)	807
BbvCI	CCTCAGC	1 cut(s)	222
BbvI	GCAGC	2 cut(s)	368, 955
BccI	CCATC	4 cut(s)	118, 166, 656, 830
BceAI	ACGGC	2 cut(s)	365, 985
BciT130I	CCWGG	1 cut(s)	675
BciVI	GTATCC	1 cut(s)	339
BcnI	CCSGG	1 cut(s)	74
BcoDI	GTCTC	1 cut(s)	561
BfaI	CTAG	2 cut(s)	543, 1007
BfmI	CTRYAG	2 cut(s)	243, 507
BfuAI	ACCTGC	1 cut(s)	380
BfuI	GTATCC	1 cut(s)	339
BisI	GCNGC	2 cut(s)	357, 944
BlsI	GCNGC	2 cut(s)	358, 945
Bme1390I	CCNGG	2 cut(s)	74, 675
Bme18I	GGWCC	1 cut(s)	874
BmgT120I	GGNCC	1 cut(s)	874
BmrFI	CCNGG	2 cut(s)	74, 675
BmsI	GCATC	3 cut(s)	44, 208, 268
BplI	GAGNNNNNCTC	1 cut(s)	1003
Bpu10I	CCTNAGC	1 cut(s)	222
Bpu14I	TTCGAA	1 cut(s)	919
BpuEI	CTTGAG	2 cut(s)	473, 701
BpuMI	CCSGG	1 cut(s)	74
BsaBI	GATNNNNATC	1 cut(s)	282
BsaJI	CCNNGG	3 cut(s)	146, 674, 774
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
Bse1I	ACTGG	1 cut(s)	612
Bse21I	CCTNAGG	1 cut(s)	807
Bse3DI	GCAATG	1 cut(s)	79
Bse8I	GATNNNNATC	1 cut(s)	282
BseBI	CCWGG	1 cut(s)	675
BseDI	CCNNGG	3 cut(s)	146, 674, 774
BseGI	GGATG	4 cut(s)	124, 283, 616, 763
BseJI	GATNNNNATC	1 cut(s)	282
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseMI	GCAATG	1 cut(s)	79
BseMII	CTCAG	4 cut(s)	213, 543, 798, 948
BseNI	ACTGG	1 cut(s)	612
BseRI	GAGGAG	4 cut(s)	7, 39, 202, 791
BseXI	GCAGC	2 cut(s)	368, 955
BsgI	GTGCAG	1 cut(s)	225
BshFI	GGCC	4 cut(s)	145, 151, 164, 538
BsiSI	CCGG	1 cut(s)	74
BslFI	GGGAC	1 cut(s)	22
BslI	CCNNNNNNNGG	1 cut(s)	73
BsmAI	GTCTC	1 cut(s)	561
BsmFI	GGGAC	1 cut(s)	22
BsmI	GAATGC	2 cut(s)	230, 972
BsnI	GGCC	4 cut(s)	145, 151, 164, 538
Bsp119I	TTCGAA	1 cut(s)	919
Bsp143I	GATC	3 cut(s)	198, 436, 547
BspANI	GGCC	4 cut(s)	145, 151, 164, 538
BspCNI	CTCAG	4 cut(s)	214, 544, 799, 949
BspMI	ACCTGC	1 cut(s)	380
BspPI	GGATC	2 cut(s)	444, 542
BspT104I	TTCGAA	1 cut(s)	919
BsrDI	GCAATG	1 cut(s)	79
BsrI	ACTGG	1 cut(s)	612
BssECI	CCNNGG	3 cut(s)	146, 674, 774
BssMI	GATC	3 cut(s)	198, 436, 547
Bst2UI	CCWGG	1 cut(s)	675
Bst4CI	ACNGT	2 cut(s)	179, 244
Bst6I	CTCTTC	1 cut(s)	179
BstBI	TTCGAA	1 cut(s)	919
BstC8I	GCNNGC	1 cut(s)	354
BstDEI	CTNAG	6 cut(s)	222, 552, 644, 807, 957, 1020
BstF5I	GGATG	4 cut(s)	124, 283, 616, 763
BstKTI	GATC	3 cut(s)	201, 439, 550
BstMAI	GTCTC	1 cut(s)	561
BstMBI	GATC	3 cut(s)	198, 436, 547
BstMWI	GCNNNNNNNGC	1 cut(s)	227
BstNI	CCWGG	1 cut(s)	675
BstNSI	RCATGY	1 cut(s)	139
BstSCI	CCNGG	2 cut(s)	72, 673
BstSFI	CTRYAG	2 cut(s)	243, 507
BstV1I	GCAGC	2 cut(s)	368, 955
BstX2I	RGATCY	1 cut(s)	547
BstXI	CCANNNNNNTGG	1 cut(s)	172
BstYI	RGATCY	1 cut(s)	547
Bsu36I	CCTNAGG	1 cut(s)	807
BsuI	GTATCC	1 cut(s)	339
BsuRI	GGCC	4 cut(s)	145, 151, 164, 538
BtsCI	GGATG	4 cut(s)	124, 283, 616, 763
BtsIMutI	CAGTG	1 cut(s)	539
BveI	ACCTGC	1 cut(s)	380
Cac8I	GCNNGC	1 cut(s)	354
CaiI	CAGNNNCTG	1 cut(s)	479
Cfr13I	GGNCC	1 cut(s)	874
Csp6I	GTAC	1 cut(s)	77
CviAII	CATG	1 cut(s)	136
CviQI	GTAC	1 cut(s)	77
DdeI	CTNAG	6 cut(s)	222, 552, 644, 807, 957, 1020
DpnI	GATC	3 cut(s)	200, 438, 549
DpnII	GATC	3 cut(s)	198, 436, 547
EaeI	YGGCCR	1 cut(s)	162
Eam1104I	CTCTTC	1 cut(s)	179
EarI	CTCTTC	1 cut(s)	179
Eco47I	GGWCC	1 cut(s)	874
Eco57I	CTGAAG	2 cut(s)	281, 788
Eco81I	CCTNAGG	1 cut(s)	807
EcoO109I	RGGNCCY	1 cut(s)	874
EcoRII	CCWGG	1 cut(s)	673
FaeI	CATG	1 cut(s)	139
FalI	AAGNNNNNCTT	4 cut(s)	85, 117, 606, 638
FaqI	GGGAC	1 cut(s)	22
FatI	CATG	1 cut(s)	135
Fnu4HI	GCNGC	2 cut(s)	357, 944
FokI	GGATG	4 cut(s)	131, 290, 623, 770
Fsp4HI	GCNGC	2 cut(s)	357, 944
FspBI	CTAG	2 cut(s)	543, 1007
GluI	GCNGC	2 cut(s)	357, 944
HaeIII	GGCC	4 cut(s)	145, 151, 164, 538
HapII	CCGG	1 cut(s)	74
Hin1II	CATG	1 cut(s)	139
HindIII	AAGCTT	2 cut(s)	94, 302
HinfI	GANTC	4 cut(s)	496, 554, 910, 916
HpaII	CCGG	1 cut(s)	74
HphI	GGTGA	3 cut(s)	56, 574, 869
Hpy166II	GTNNAC	1 cut(s)	448
Hpy188I	TCNGA	9 cut(s)	300, 382, 501, 628, 768, 775, 915, 958, 966
Hpy188III	TCNNGA	5 cut(s)	215, 551, 785, 806, 981
Hpy8I	GTNNAC	1 cut(s)	448
HpyAV	CCTTC	3 cut(s)	31, 593, 608
HpyCH4III	ACNGT	2 cut(s)	179, 244
HpyCH4IV	ACGT	1 cut(s)	736
HpyCH4V	TGCA	6 cut(s)	206, 281, 356, 375, 706, 746
HpyF10VI	GCNNNNNNNGC	1 cut(s)	227
HpyF3I	CTNAG	6 cut(s)	222, 552, 644, 807, 957, 1020
HpySE526I	ACGT	1 cut(s)	736
Hsp92II	CATG	1 cut(s)	139
Kzo9I	GATC	3 cut(s)	198, 436, 547
LmnI	GCTCC	1 cut(s)	808
LpnPI	CCDG	9 cut(s)	87, 385, 564, 593, 660, 687, 819, 857, 953
Lsp1109I	GCAGC	2 cut(s)	368, 955
LweI	GCATC	3 cut(s)	44, 208, 268
MaeI	CTAG	2 cut(s)	543, 1007
MaeII	ACGT	1 cut(s)	736
MaeIII	GTNAC	1 cut(s)	690
MalI	GATC	3 cut(s)	200, 438, 549
MboI	GATC	3 cut(s)	198, 436, 547
MboII	GAAGA	4 cut(s)	196, 395, 671, 824
MfeI	CAATTG	2 cut(s)	288, 846
MflI	RGATCY	1 cut(s)	547
MlyI	GAGTC	2 cut(s)	563, 904
MseI	TTAA	5 cut(s)	330, 561, 566, 633, 798
MspI	CCGG	1 cut(s)	74
MspR9I	CCNGG	2 cut(s)	74, 675
MunI	CAATTG	2 cut(s)	288, 846
Mva1269I	GAATGC	2 cut(s)	230, 972
MvaI	CCWGG	1 cut(s)	675
MwoI	GCNNNNNNNGC	1 cut(s)	227
NciI	CCSGG	1 cut(s)	74
NdeII	GATC	3 cut(s)	198, 436, 547
NlaIII	CATG	1 cut(s)	139
NmeAIII	GCCGAG	1 cut(s)	171
NspI	RCATGY	1 cut(s)	139
NspV	TTCGAA	1 cut(s)	919
PctI	GAATGC	2 cut(s)	230, 972
PfeI	GAWTC	2 cut(s)	496, 916
PkrI	GCNGC	2 cut(s)	358, 945
PleI	GAGTC	2 cut(s)	562, 904
PpsI	GAGTC	2 cut(s)	562, 904
PpuMI	RGGWCCY	1 cut(s)	874
PshBI	ATTAAT	1 cut(s)	566
Psp5II	RGGWCCY	1 cut(s)	874
Psp6I	CCWGG	1 cut(s)	673
PspGI	CCWGG	1 cut(s)	673
PspPI	GGNCC	1 cut(s)	874
PspPPI	RGGWCCY	1 cut(s)	874
PstNI	CAGNNNCTG	1 cut(s)	479
PsuI	RGATCY	1 cut(s)	547
RsaI	GTAC	1 cut(s)	78
RsaNI	GTAC	1 cut(s)	77
SaqAI	TTAA	5 cut(s)	330, 561, 566, 633, 798
SatI	GCNGC	2 cut(s)	357, 944
Sau3AI	GATC	3 cut(s)	198, 436, 547
Sau96I	GGNCC	1 cut(s)	874
SchI	GAGTC	2 cut(s)	563, 904
ScrFI	CCNGG	2 cut(s)	74, 675
SfaNI	GCATC	3 cut(s)	44, 208, 268
SfcI	CTRYAG	2 cut(s)	243, 507
SfuI	TTCGAA	1 cut(s)	919
SinI	GGWCC	1 cut(s)	874
SmlI	CTYRAG	2 cut(s)	488, 680
SmoI	CTYRAG	2 cut(s)	488, 680
SspMI	CTAG	2 cut(s)	543, 1007
StyD4I	CCNGG	2 cut(s)	72, 673
TaaI	ACNGT	2 cut(s)	179, 244
TaiI	ACGT	1 cut(s)	739
TaqI	TCGA	5 cut(s)	52, 252, 834, 919, 980
TfiI	GAWTC	2 cut(s)	496, 916
Tru1I	TTAA	5 cut(s)	330, 561, 566, 633, 798
Tru9I	TTAA	5 cut(s)	330, 561, 566, 633, 798
TscAI	CASTG	1 cut(s)	539
TseI	GCWGC	2 cut(s)	356, 943
TspDTI	ATGAA	3 cut(s)	474, 627, 774
TspGWI	ACGGA	3 cut(s)	146, 922, 938
TspRI	CASTG	1 cut(s)	539
VpaK11BI	GGWCC	1 cut(s)	874
VspI	ATTAAT	1 cut(s)	566
XapI	RAATTY	4 cut(s)	469, 528, 762, 861
XceI	RCATGY	1 cut(s)	139
XspI	CTAG	2 cut(s)	543, 1007

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.