Rroxscaffold_7G00201240

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0011302
Physical Location & Seq
Forward (+)
48811850 .. 48827215
15366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00201240.1

Sequence Viewer

Length: 1080 bp
ATGTTAGGTGCACTTCCAACCTCACAGAAACCATCAAATTCAAATGAGACATCAAGAAGGTCTTCCACACGCCACTCGGTGATCTGGTCTCCCATCAAGTACTCGGATATGCTGTTTGTTGAAATCACCGAACCATTGTCACTGATAGAACAATTCTCCTCTACCTTATATGATGAGGATGACAATTTTTGTTCATTGCATCTTGTTCTAGTCAATTCCAAGAAATGGACCAGAGAGAGAGAGAGAGAGATAGAACAGCTAAGATCTCTGAGGCAAAGAAAAATGGCACAGTTAAATTTCGAGAATATTATCATTTTTCATTGGTGCTTTTGGGTGGTACTGGCAGAGAACTTTGATCTGTGCACTTCAGAAGCTTTTCTAGAATTGTGTAACAATGCTTGTTCTTTTGCATTCTTTCAGAAAGATTATGAGGAATTGGCTATATCAGTAATGAGCATAGTGGATCGCCTTGTTCACAAGACCAATGAAAAGATAAATTCAGCTACTGATGTCCTCAAGGGGATTCTGAAACCTATAGTTGATGATGTTGTAGAAATTCAGTGGCCTCCTAGAGATCCTGAGTCTCTTAAATTAATGGAGAAAGAAATCACTGAAAGGGAACAAGAAGGGCTACTGGATGAAGGCTTCCTTTCAGAAGTTAATGCTCAACTAAGACAAGCAAAAGAAGATGGTGATAAGCCAGGGCTTGAGGCTATGTTACAAAAGGTTTTGCAACTCTACGCTTCTAAAGTTCTATCCAAACGTAGTTATGCAAAGAAAGTCGCCAGAGGGCAAGACCCTCTGGGTGGGGATGAAATTCTGAAGGCCGAGGAGTTTCTTGAAACCATAATTAAAGCTCCTGAGGAAGAATGGAACAAGCTGTTGCTCGATGGATTGTCAATTGGCAAAGGTGAAATTCCACCACAGGACCTCTATGCTGTCATAAAGAAAAGGATTGAACGGACTCTGATCCGAACGGAGGGTGGTTCTTACCAGCAGCGTGTTCTTTCTGAGTATCTGAATGGCATTCAATCGAGAGCAGAGCAAGTTGTCCAAGTGCTAGAGGGCAAGCCGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

359

Amino Acids

41.21

Weight (kDa)

5.12

Isoelectric Point (pI)

52.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 225
AciI CCGC 1 cut(s) 1073
AclWI GGATC 3 cut(s) 471, 569, 964
AcsI RAATTY 6 cut(s) 37, 295, 496, 555, 816, 915
AcuI CTGAAG 2 cut(s) 351, 842
AdeI CACNNNGTG 1 cut(s) 79
AfaI GTAC 2 cut(s) 101, 339
AfiI CCNNNNNNNGG 3 cut(s) 225, 806, 979
AgsI TTSAA 5 cut(s) 42, 122, 842, 959, 1031
AjnI CCWGG 1 cut(s) 700
AluBI AGCT 5 cut(s) 259, 374, 503, 857, 880
AluI AGCT 5 cut(s) 259, 374, 503, 857, 880
Alw21I GWGCWC 2 cut(s) 13, 365
Alw26I GTCTC 3 cut(s) 41, 93, 588
Alw44I GTGCAC 2 cut(s) 9, 361
AlwI GGATC 3 cut(s) 471, 569, 964
AlwNI CAGNNNCTG 1 cut(s) 506
AoxI GGCC 2 cut(s) 563, 825
ApaLI GTGCAC 2 cut(s) 9, 361
ApeKI GCWGC 1 cut(s) 997
ApoI RAATTY 6 cut(s) 37, 295, 496, 555, 816, 915
AseI ATTAAT 1 cut(s) 593
Asp700I GAANNNNTTC 2 cut(s) 61, 375
AspS9I GGNCC 2 cut(s) 228, 928
AsuHPI GGTGA 4 cut(s) 91, 118, 704, 923
AvaII GGWCC 2 cut(s) 228, 928
AxyI CCTNAGG 1 cut(s) 861
BaeGI GKGCMC 2 cut(s) 13, 365
BbsI GAAGAC 1 cut(s) 54
Bbv12I GWGCWC 2 cut(s) 13, 365
BbvI GCAGC 1 cut(s) 1009
BccI CCATC 4 cut(s) 40, 101, 683, 884
BciT130I CCWGG 1 cut(s) 702
BcoDI GTCTC 3 cut(s) 41, 93, 588
BfaI CTAG 4 cut(s) 209, 380, 570, 1061
BfmI CTRYAG 1 cut(s) 534
BglII AGATCT 1 cut(s) 263
BisI GCNGC 2 cut(s) 998, 1073
BlsI GCNGC 2 cut(s) 999, 1074
BmcAI AGTACT 1 cut(s) 101
Bme1390I CCNGG 1 cut(s) 702
Bme18I GGWCC 2 cut(s) 228, 928
BmgT120I GGNCC 2 cut(s) 228, 928
BmrFI CCNGG 1 cut(s) 702
BmsI GCATC 1 cut(s) 208
BpiI GAAGAC 1 cut(s) 54
BpuEI CTTGAG 2 cut(s) 500, 728
BsaI GGTCTC 1 cut(s) 93
BsaJI CCNNGG 2 cut(s) 701, 828
Bsc4I CCNNNNNNNGG 3 cut(s) 225, 806, 979
Bse1I ACTGG 2 cut(s) 345, 639
Bse21I CCTNAGG 1 cut(s) 861
Bse3DI GCAATG 1 cut(s) 194
BseBI CCWGG 1 cut(s) 702
BseDI CCNNGG 2 cut(s) 701, 828
BseGI GGATG 3 cut(s) 184, 643, 817
BseLI CCNNNNNNNGG 3 cut(s) 225, 806, 979
BseMI GCAATG 1 cut(s) 194
BseMII CTCAG 4 cut(s) 260, 570, 852, 1002
BseNI ACTGG 2 cut(s) 345, 639
BseRI GAGGAG 2 cut(s) 148, 845
BseSI GKGCMC 2 cut(s) 13, 365
BseXI GCAGC 1 cut(s) 1009
BshFI GGCC 2 cut(s) 565, 827
BsiHKAI GWGCWC 2 cut(s) 13, 365
BslI CCNNNNNNNGG 3 cut(s) 225, 806, 979
BsmAI GTCTC 3 cut(s) 41, 93, 588
BsmI GAATGC 2 cut(s) 410, 1026
BsnI GGCC 2 cut(s) 565, 827
Bso31I GGTCTC 1 cut(s) 93
Bsp1286I GDGCHC 2 cut(s) 13, 365
Bsp143I GATC 6 cut(s) 81, 263, 355, 463, 574, 969
BspACI CCGC 1 cut(s) 1073
BspANI GGCC 2 cut(s) 565, 827
BspCNI CTCAG 4 cut(s) 261, 571, 853, 1003
BspPI GGATC 3 cut(s) 471, 569, 964
BspTNI GGTCTC 1 cut(s) 93
BsrDI GCAATG 1 cut(s) 194
BsrI ACTGG 2 cut(s) 345, 639
BssECI CCNNGG 2 cut(s) 701, 828
BssMI GATC 6 cut(s) 81, 263, 355, 463, 574, 969
Bst2UI CCWGG 1 cut(s) 702
Bst4CI ACNGT 1 cut(s) 291
BstC8I GCNNGC 1 cut(s) 1070
BstDEI CTNAG 6 cut(s) 260, 269, 579, 671, 861, 1011
BstF5I GGATG 3 cut(s) 184, 643, 817
BstKTI GATC 6 cut(s) 84, 266, 358, 466, 577, 972
BstMAI GTCTC 3 cut(s) 41, 93, 588
BstMBI GATC 6 cut(s) 81, 263, 355, 463, 574, 969
BstNI CCWGG 1 cut(s) 702
BstSCI CCNGG 1 cut(s) 700
BstSFI CTRYAG 1 cut(s) 534
BstSLI GKGCMC 2 cut(s) 13, 365
BstV1I GCAGC 1 cut(s) 1009
BstV2I GAAGAC 1 cut(s) 54
BstX2I RGATCY 2 cut(s) 263, 574
BstYI RGATCY 2 cut(s) 263, 574
Bsu36I CCTNAGG 1 cut(s) 861
BsuRI GGCC 2 cut(s) 565, 827
BtsCI GGATG 3 cut(s) 184, 643, 817
BtsIMutI CAGTG 3 cut(s) 140, 566, 609
Cac8I GCNNGC 1 cut(s) 1070
CaiI CAGNNNCTG 1 cut(s) 506
Cfr13I GGNCC 2 cut(s) 228, 928
Csp6I GTAC 2 cut(s) 100, 338
CviQI GTAC 2 cut(s) 100, 338
DdeI CTNAG 6 cut(s) 260, 269, 579, 671, 861, 1011
DpnI GATC 6 cut(s) 83, 265, 357, 465, 576, 971
DpnII GATC 6 cut(s) 81, 263, 355, 463, 574, 969
DraIII CACNNNGTG 1 cut(s) 79
Eco31I GGTCTC 1 cut(s) 93
Eco47I GGWCC 2 cut(s) 228, 928
Eco57I CTGAAG 2 cut(s) 351, 842
Eco81I CCTNAGG 1 cut(s) 861
EcoO109I RGGNCCY 1 cut(s) 928
EcoRII CCWGG 1 cut(s) 700
FalI AAGNNNNNCTT 4 cut(s) 46, 78, 633, 665
Fnu4HI GCNGC 2 cut(s) 998, 1073
FokI GGATG 3 cut(s) 191, 650, 824
Fsp4HI GCNGC 2 cut(s) 998, 1073
FspBI CTAG 4 cut(s) 209, 380, 570, 1061
GluI GCNGC 2 cut(s) 998, 1073
HaeIII GGCC 2 cut(s) 565, 827
HindIII AAGCTT 1 cut(s) 372
HinfI GANTC 3 cut(s) 523, 581, 964
HphI GGTGA 4 cut(s) 91, 118, 704, 923
Hpy166II GTNNAC 3 cut(s) 11, 363, 475
Hpy188III TCNNGA 7 cut(s) 54, 301, 380, 578, 839, 860, 1035
Hpy8I GTNNAC 3 cut(s) 11, 363, 475
HpyAV CCTTC 4 cut(s) 51, 620, 635, 817
HpyCH4III ACNGT 1 cut(s) 291
HpyCH4IV ACGT 1 cut(s) 763
HpyCH4V TGCA 6 cut(s) 11, 199, 363, 410, 733, 773
HpyF3I CTNAG 6 cut(s) 260, 269, 579, 671, 861, 1011
HpySE526I ACGT 1 cut(s) 763
Kzo9I GATC 6 cut(s) 81, 263, 355, 463, 574, 969
LmnI GCTCC 1 cut(s) 862
Lsp1109I GCAGC 1 cut(s) 1009
LweI GCATC 1 cut(s) 208
MaeI CTAG 4 cut(s) 209, 380, 570, 1061
MaeII ACGT 1 cut(s) 763
MaeIII GTNAC 3 cut(s) 138, 389, 717
MalI GATC 6 cut(s) 83, 265, 357, 465, 576, 971
MboI GATC 6 cut(s) 81, 263, 355, 463, 574, 969
MboII GAAGA 3 cut(s) 54, 698, 878
MfeI CAATTG 1 cut(s) 900
MflI RGATCY 2 cut(s) 263, 574
MhlI GDGCHC 2 cut(s) 13, 365
MlyI GAGTC 2 cut(s) 590, 958
MmeI TCCRAC 1 cut(s) 41
MroXI GAANNNNTTC 2 cut(s) 61, 375
MseI TTAA 5 cut(s) 293, 588, 593, 660, 852
MspR9I CCNGG 1 cut(s) 702
MunI CAATTG 1 cut(s) 900
Mva1269I GAATGC 2 cut(s) 410, 1026
MvaI CCWGG 1 cut(s) 702
NdeII GATC 6 cut(s) 81, 263, 355, 463, 574, 969
NmeAIII GCCGAG 1 cut(s) 853
NmuCI GTSAC 1 cut(s) 138
PctI GAATGC 2 cut(s) 410, 1026
PdmI GAANNNNTTC 2 cut(s) 61, 375
PfeI GAWTC 1 cut(s) 523
PflMI CCANNNNNTGG 1 cut(s) 225
PkrI GCNGC 2 cut(s) 999, 1074
PleI GAGTC 2 cut(s) 589, 958
PpsI GAGTC 2 cut(s) 589, 958
PpuMI RGGWCCY 1 cut(s) 928
PshBI ATTAAT 1 cut(s) 593
Psp5II RGGWCCY 1 cut(s) 928
Psp6I CCWGG 1 cut(s) 700
PspGI CCWGG 1 cut(s) 700
PspPI GGNCC 2 cut(s) 228, 928
PspPPI RGGWCCY 1 cut(s) 928
PstNI CAGNNNCTG 1 cut(s) 506
PsuI RGATCY 2 cut(s) 263, 574
RsaI GTAC 2 cut(s) 101, 339
RsaNI GTAC 2 cut(s) 100, 338
SaqAI TTAA 5 cut(s) 293, 588, 593, 660, 852
SatI GCNGC 2 cut(s) 998, 1073
Sau3AI GATC 6 cut(s) 81, 263, 355, 463, 574, 969
Sau96I GGNCC 2 cut(s) 228, 928
ScaI AGTACT 1 cut(s) 101
SchI GAGTC 2 cut(s) 590, 958
ScrFI CCNGG 1 cut(s) 702
SduI GDGCHC 2 cut(s) 13, 365
SfaNI GCATC 1 cut(s) 208
SfcI CTRYAG 1 cut(s) 534
SinI GGWCC 2 cut(s) 228, 928
SmlI CTYRAG 2 cut(s) 515, 707
SmoI CTYRAG 2 cut(s) 515, 707
SsiI CCGC 1 cut(s) 1073
SspI AATATT 1 cut(s) 307
SspMI CTAG 4 cut(s) 209, 380, 570, 1061
StyD4I CCNGG 1 cut(s) 700
TaaI ACNGT 1 cut(s) 291
TaiI ACGT 1 cut(s) 766
TaqI TCGA 3 cut(s) 300, 888, 1034
TatI WGTACW 1 cut(s) 99
TauI GCSGC 1 cut(s) 1075
TfiI GAWTC 1 cut(s) 523
Tru1I TTAA 5 cut(s) 293, 588, 593, 660, 852
Tru9I TTAA 5 cut(s) 293, 588, 593, 660, 852
TscAI CASTG 3 cut(s) 147, 566, 616
TseFI GTSAC 1 cut(s) 138
TseI GCWGC 1 cut(s) 997
Tsp45I GTSAC 1 cut(s) 138
TspDTI ATGAA 5 cut(s) 183, 308, 501, 654, 828
TspGWI ACGGA 2 cut(s) 976, 992
TspRI CASTG 3 cut(s) 147, 566, 616
Van91I CCANNNNNTGG 1 cut(s) 225
VneI GTGCAC 2 cut(s) 9, 361
VpaK11BI GGWCC 2 cut(s) 228, 928
VspI ATTAAT 1 cut(s) 593
XapI RAATTY 6 cut(s) 37, 295, 496, 555, 816, 915
XbaI TCTAGA 1 cut(s) 379
XmnI GAANNNNTTC 2 cut(s) 61, 375
XspI CTAG 4 cut(s) 209, 380, 570, 1061
ZrmI AGTACT 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.