Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0011302

Physical Location & Seq

Genomic Coordinates Reverse (-)

19272072 .. 19278064

Gene Structure 5993 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG134800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGCTTCCTCTTCCTCCTCCTCCTTCTCTCTTTCTCTGTCCCTACAACCTCCTCGATGCTCTTATCACCGACACCCGGTACATTGCTTTGGCATAAGCTTTTCTTTGCTAAAGAATTGGGATGTTATGGTCTCGGGGATGTGGAGGCCGAGGCCATTCCGTTCGGCCAATTTAATGGACTGTAAGAAGAGGAGAACTTTGATCTGTGCAGTCAATCAAGATGCTGAGGAAGCATTCAAAAAGACTGTAGAAGTCGATAGGCTGATAGACAAATTGAGGGATGCAAATCCAATTGAACTTCAGAAGCTTGTTGTTGAAAATGTGTTGGCATTTAACGAGGGCTTTTGGATACGGCTTGCAGCAAGAACTGATACCTGCAAATCAGAAGATGATAAAAAAGATTATGAGGAATTGGCTATATCAGTAATGAGCATAGTGGATCGCCTTGTTCACAAGACCAATGAAAAGATAAATTCAGCTACTGATGTCCTCAAGGGGATTCTGAAACCTATAGTTGATGATGTTGTAGAAATTCAGTGGCCTCCTAGAGATCCCGAGTCTCTTAAAATAATGGAGAAAGAAATCACCGAAAGGGAACAAGAAGGGCTACTGGATGAAGGCTTCCTTTCAGAAGTTAATGCTCAACTAAGACAAGCAAAAGAAGATGGAGATAAGCCAGGGCTTGAGGCTATGTTACAAAAGGTTTTGCAACTCTATGCTTCTAAAGTTCTATCCAAACGTAGTTATGCAAAGAAAGGGGATGAAATTCTGAAGGCCGAGGAGTTTCTTGAAACCATAATTAAAGGTATCTTGCTCTTCTTTCAAATTCATGAAGAAAATCTTATATTACTGTTTATTTACCAATCATATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

291

Amino Acids

33.41

Weight (kDa)

5.71

Isoelectric Point (pI)

43.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21385 AT2G21385 AT2G21385 AT2G21385 AT2G21385
fragaria_vesca	FvH4_2g10050
malus_domestica	MD10G1066100.v1.1
prunus_persica	Prupe.8G088000_v2.0.a1 Prupe.8G088000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0266981
rosa_laevigata	RLG00000014054
rosa_multiflora	Rmu_sc0011492.1_g000003 Rmu_sc0017071.1_g000006
rosa_roxburghii	Rroxscaffold_7G00201240
rosa_rugosa	Rorug06G0028400
rosa_samantha	Rh6AG149800 Rh6BG150700 Rh6CG145800 Rh6DG134800
rosa_wichuraiana	Rw6G012970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	383
AclWI	GGATC	2 cut(s)	447, 545
AcoI	YGGCCR	1 cut(s)	165
AcsI	RAATTY	4 cut(s)	472, 531, 765, 825
AcuI	CTGAAG	2 cut(s)	284, 791
AfaI	GTAC	1 cut(s)	81
AfiI	CCNNNNNNNGG	1 cut(s)	76
AgsI	TTSAA	5 cut(s)	238, 296, 317, 791, 824
AjnI	CCWGG	1 cut(s)	676
AluBI	AGCT	3 cut(s)	99, 307, 479
AluI	AGCT	3 cut(s)	99, 307, 479
Alw26I	GTCTC	2 cut(s)	136, 564
AlwI	GGATC	2 cut(s)	447, 545
AlwNI	CAGNNNCTG	1 cut(s)	482
Ama87I	CYCGRG	2 cut(s)	133, 554
AoxI	GGCC	5 cut(s)	146, 152, 165, 539, 774
ApeKI	GCWGC	1 cut(s)	359
ApoI	RAATTY	4 cut(s)	472, 531, 765, 825
AsuC2I	CCSGG	1 cut(s)	77
AsuHPI	GGTGA	2 cut(s)	59, 577
AvaI	CYCGRG	2 cut(s)	133, 554
BbvCI	CCTCAGC	1 cut(s)	225
BbvI	GCAGC	1 cut(s)	371
BccI	CCATC	1 cut(s)	659
BceAI	ACGGC	1 cut(s)	368
BciT130I	CCWGG	1 cut(s)	678
BciVI	GTATCC	1 cut(s)	342
BcnI	CCSGG	1 cut(s)	77
BcoDI	GTCTC	2 cut(s)	136, 564
BfaI	CTAG	1 cut(s)	546
BfmI	CTRYAG	2 cut(s)	246, 510
BfuAI	ACCTGC	1 cut(s)	383
BfuI	GTATCC	1 cut(s)	342
BisI	GCNGC	1 cut(s)	360
BlsI	GCNGC	1 cut(s)	361
Bme1390I	CCNGG	2 cut(s)	77, 678
BmeT110I	CYCGRG	2 cut(s)	133, 554
BmrFI	CCNGG	2 cut(s)	77, 678
BmsI	GCATC	3 cut(s)	47, 211, 271
Bpu10I	CCTNAGC	1 cut(s)	225
BpuEI	CTTGAG	2 cut(s)	476, 704
BpuMI	CCSGG	1 cut(s)	77
BsaBI	GATNNNNATC	1 cut(s)	285
BsaI	GGTCTC	1 cut(s)	136
BsaJI	CCNNGG	3 cut(s)	149, 677, 777
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse1I	ACTGG	1 cut(s)	615
Bse3DI	GCAATG	1 cut(s)	82
Bse8I	GATNNNNATC	1 cut(s)	285
BseBI	CCWGG	1 cut(s)	678
BseDI	CCNNGG	3 cut(s)	149, 677, 777
BseGI	GGATG	5 cut(s)	127, 144, 286, 619, 766
BseJI	GATNNNNATC	1 cut(s)	285
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMI	GCAATG	1 cut(s)	82
BseMII	CTCAG	1 cut(s)	216
BseNI	ACTGG	1 cut(s)	615
BseRI	GAGGAG	5 cut(s)	7, 10, 42, 205, 794
BseXI	GCAGC	1 cut(s)	371
BsgI	GTGCAG	1 cut(s)	228
BshFI	GGCC	5 cut(s)	148, 154, 167, 541, 776
BsiHKCI	CYCGRG	2 cut(s)	133, 554
BsiSI	CCGG	1 cut(s)	77
BslFI	GGGAC	1 cut(s)	25
BslI	CCNNNNNNNGG	1 cut(s)	76
BsmAI	GTCTC	2 cut(s)	136, 564
BsmFI	GGGAC	1 cut(s)	25
BsmI	GAATGC	1 cut(s)	233
BsnI	GGCC	5 cut(s)	148, 154, 167, 541, 776
Bso31I	GGTCTC	1 cut(s)	136
BsoBI	CYCGRG	2 cut(s)	133, 554
Bsp143I	GATC	3 cut(s)	201, 439, 550
BspANI	GGCC	5 cut(s)	148, 154, 167, 541, 776
BspCNI	CTCAG	1 cut(s)	217
BspHI	TCATGA	1 cut(s)	829
BspMI	ACCTGC	1 cut(s)	383
BspPI	GGATC	2 cut(s)	447, 545
BspQI	GCTCTTC	1 cut(s)	821
BspTNI	GGTCTC	1 cut(s)	136
BsrDI	GCAATG	1 cut(s)	82
BsrI	ACTGG	1 cut(s)	615
BssECI	CCNNGG	3 cut(s)	149, 677, 777
BssMI	GATC	3 cut(s)	201, 439, 550
Bst2UI	CCWGG	1 cut(s)	678
Bst4CI	ACNGT	3 cut(s)	182, 247, 852
Bst6I	CTCTTC	3 cut(s)	16, 182, 821
BstC8I	GCNNGC	1 cut(s)	357
BstDEI	CTNAG	2 cut(s)	225, 647
BstF5I	GGATG	5 cut(s)	127, 144, 286, 619, 766
BstKTI	GATC	3 cut(s)	204, 442, 553
BstMAI	GTCTC	2 cut(s)	136, 564
BstMBI	GATC	3 cut(s)	201, 439, 550
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstNI	CCWGG	1 cut(s)	678
BstSCI	CCNGG	2 cut(s)	75, 676
BstSFI	CTRYAG	2 cut(s)	246, 510
BstV1I	GCAGC	1 cut(s)	371
BstX2I	RGATCY	1 cut(s)	550
BstXI	CCANNNNNNTGG	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	550
BsuI	GTATCC	1 cut(s)	342
BsuRI	GGCC	5 cut(s)	148, 154, 167, 541, 776
BtsCI	GGATG	5 cut(s)	127, 144, 286, 619, 766
BtsIMutI	CAGTG	1 cut(s)	542
BveI	ACCTGC	1 cut(s)	383
Cac8I	GCNNGC	1 cut(s)	357
CaiI	CAGNNNCTG	1 cut(s)	482
CciI	TCATGA	1 cut(s)	829
Csp6I	GTAC	1 cut(s)	80
CviAII	CATG	1 cut(s)	830
CviQI	GTAC	1 cut(s)	80
DdeI	CTNAG	2 cut(s)	225, 647
DpnI	GATC	3 cut(s)	203, 441, 552
DpnII	GATC	3 cut(s)	201, 439, 550
EaeI	YGGCCR	1 cut(s)	165
Eam1104I	CTCTTC	3 cut(s)	16, 182, 821
EarI	CTCTTC	3 cut(s)	16, 182, 821
Eco31I	GGTCTC	1 cut(s)	136
Eco57I	CTGAAG	2 cut(s)	284, 791
Eco88I	CYCGRG	2 cut(s)	133, 554
EcoRII	CCWGG	1 cut(s)	676
FaeI	CATG	1 cut(s)	833
FalI	AAGNNNNNCTT	6 cut(s)	88, 120, 609, 641, 825, 857
FaqI	GGGAC	1 cut(s)	25
FatI	CATG	1 cut(s)	829
Fnu4HI	GCNGC	1 cut(s)	360
FokI	GGATG	5 cut(s)	134, 151, 293, 626, 773
Fsp4HI	GCNGC	1 cut(s)	360
FspBI	CTAG	1 cut(s)	546
GluI	GCNGC	1 cut(s)	360
HaeIII	GGCC	5 cut(s)	148, 154, 167, 541, 776
HapII	CCGG	1 cut(s)	77
Hin1II	CATG	1 cut(s)	833
HindIII	AAGCTT	2 cut(s)	97, 305
HinfI	GANTC	2 cut(s)	499, 557
HpaII	CCGG	1 cut(s)	77
HphI	GGTGA	2 cut(s)	59, 577
Hpy166II	GTNNAC	1 cut(s)	451
Hpy188I	TCNGA	5 cut(s)	303, 385, 504, 631, 771
Hpy188III	TCNNGA	4 cut(s)	218, 554, 788, 830
Hpy8I	GTNNAC	1 cut(s)	451
HpyAV	CCTTC	4 cut(s)	34, 596, 611, 766
HpyCH4III	ACNGT	3 cut(s)	182, 247, 852
HpyCH4IV	ACGT	1 cut(s)	739
HpyCH4V	TGCA	6 cut(s)	209, 284, 359, 378, 709, 749
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpyF3I	CTNAG	2 cut(s)	225, 647
HpySE526I	ACGT	1 cut(s)	739
Hsp92II	CATG	1 cut(s)	833
Kzo9I	GATC	3 cut(s)	201, 439, 550
LguI	GCTCTTC	1 cut(s)	821
LpnPI	CCDG	5 cut(s)	90, 388, 596, 663, 690
Lsp1109I	GCAGC	1 cut(s)	371
LweI	GCATC	3 cut(s)	47, 211, 271
MaeI	CTAG	1 cut(s)	546
MaeII	ACGT	1 cut(s)	739
MaeIII	GTNAC	1 cut(s)	693
MalI	GATC	3 cut(s)	203, 441, 552
MboI	GATC	3 cut(s)	201, 439, 550
MboII	GAAGA	6 cut(s)	3, 199, 398, 674, 808, 845
MfeI	CAATTG	1 cut(s)	291
MflI	RGATCY	1 cut(s)	550
MlyI	GAGTC	1 cut(s)	566
MseI	TTAA	5 cut(s)	173, 333, 564, 636, 801
MspI	CCGG	1 cut(s)	77
MspR9I	CCNGG	2 cut(s)	77, 678
MunI	CAATTG	1 cut(s)	291
Mva1269I	GAATGC	1 cut(s)	233
MvaI	CCWGG	1 cut(s)	678
MwoI	GCNNNNNNNGC	1 cut(s)	230
NciI	CCSGG	1 cut(s)	77
NdeII	GATC	3 cut(s)	201, 439, 550
NlaIII	CATG	1 cut(s)	833
NmeAIII	GCCGAG	2 cut(s)	174, 802
PagI	TCATGA	1 cut(s)	829
PciSI	GCTCTTC	1 cut(s)	821
PctI	GAATGC	1 cut(s)	233
PfeI	GAWTC	1 cut(s)	499
PkrI	GCNGC	1 cut(s)	361
PleI	GAGTC	1 cut(s)	565
PpsI	GAGTC	1 cut(s)	565
Psp6I	CCWGG	1 cut(s)	676
PspGI	CCWGG	1 cut(s)	676
PstNI	CAGNNNCTG	1 cut(s)	482
PsuI	RGATCY	1 cut(s)	550
RsaI	GTAC	1 cut(s)	81
RsaNI	GTAC	1 cut(s)	80
SapI	GCTCTTC	1 cut(s)	821
SaqAI	TTAA	5 cut(s)	173, 333, 564, 636, 801
SatI	GCNGC	1 cut(s)	360
Sau3AI	GATC	3 cut(s)	201, 439, 550
SchI	GAGTC	1 cut(s)	566
ScrFI	CCNGG	2 cut(s)	77, 678
SetI	ASST	9 cut(s)	52, 101, 309, 377, 481, 511, 705, 742, 808
SfaNI	GCATC	3 cut(s)	47, 211, 271
SfcI	CTRYAG	2 cut(s)	246, 510
SmlI	CTYRAG	2 cut(s)	491, 683
SmoI	CTYRAG	2 cut(s)	491, 683
SspMI	CTAG	1 cut(s)	546
StyD4I	CCNGG	2 cut(s)	75, 676
TaaI	ACNGT	3 cut(s)	182, 247, 852
TaiI	ACGT	1 cut(s)	742
TaqI	TCGA	2 cut(s)	55, 255
TfiI	GAWTC	1 cut(s)	499
Tru1I	TTAA	5 cut(s)	173, 333, 564, 636, 801
Tru9I	TTAA	5 cut(s)	173, 333, 564, 636, 801
TscAI	CASTG	1 cut(s)	542
TseI	GCWGC	1 cut(s)	359
TspDTI	ATGAA	5 cut(s)	477, 630, 777, 818, 846
TspGWI	ACGGA	1 cut(s)	149
TspRI	CASTG	1 cut(s)	542
XapI	RAATTY	4 cut(s)	472, 531, 765, 825
XspI	CTAG	1 cut(s)	546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.