Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0011302

Physical Location & Seq

Genomic Coordinates Forward (+)

46230756 .. 46236995

Gene Structure 6240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014054

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGCTTCCTCCTCTTTCTCTCTTTCTCTGTCCCCACAACCTCCTCGATGCTCTTATCACCGACACCCGGTACATTGCTTTGGCATAAGCTTTTCTTTGCTAAAGAATTGGAATGTTATGGTTTCGGGGATGTGGAGGCCGAGGCCATTCCGTTCGGCCAATTTGATGGACTGTAAGAAGAGGAGAACTTTGATCTGTGCAGTCAATCAAGATGCTGAGGAAGCATTCAAAAAGACTGTAGAAGTCGATAGGCTAATAGACAAATTGAGGGATGCCAATCCAATTGAACTTCAGAAGCTTGTTGTTGAAAATGTGTTGGCATTTAACGAGGGCTTTTGGATACGGCTTGCAGCAAGAACTGATACCTGCAAATCAGAAGATGATAAAAAAGATTATGAAGAATTGGCTATATCAGTAATGAGCATAGTGGATCGCCTTGTTCACAAGACCAATGAAAAGATAAATTCAGCTACTGATGTCCTCAAGGGGATTCTGAAACCTATAGTTGATGATGTTGTAGAAATTCAGTGGCCTCCTAGAGATCCTGAGTCTCTTAAATTAATGGAGAAAGAAATCACTGAAAGAGAACAAGAAGGGCTACTGGATGAAGGCTTCCTTTCAGAAGTAAATGCTCAACTAAGACAAGCAAAAGAAGATGGAGATAAGCCAGGGCTTGAGGCTATGTTACAAAAGGTTTTGCAACTCTACGCTTCTAAAGTTCTATCCAAACGTAGTTATGCAAAGAAAGGGGATGAAATTCTGAAGGCCGAGGAGTTTCTTGAAACCATAATTAAAGCTCCTGAGGAAGAATGGAACAAGCTGTTGCTCGATGGATTGTCAATTGGCAAAGGTGAAATTCCACCACAGGACCTCTATGCTGTAATAAAGAAAAGGATTGAACGGACTCTGATCCGAACGGAGGGTGGTTCTTACCAGCAGCGTGTTCTTTCTGAGTATCTGAACGGCATTCAATCGAGAGCAGAGCAAGTTGTCCAAGTGCTAGAGGGCAAGCCGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

340

Amino Acids

38.68

Weight (kDa)

6.0

Isoelectric Point (pI)

46.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21385 AT2G21385 AT2G21385 AT2G21385 AT2G21385
fragaria_vesca	FvH4_2g10050
malus_domestica	MD10G1066100.v1.1
prunus_persica	Prupe.8G088000_v2.0.a1 Prupe.8G088000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0266981
rosa_laevigata	RLG00000014054
rosa_multiflora	Rmu_sc0011492.1_g000003 Rmu_sc0017071.1_g000006
rosa_roxburghii	Rroxscaffold_7G00201240
rosa_rugosa	Rorug06G0028400
rosa_samantha	Rh6AG149800 Rh6BG150700 Rh6CG145800 Rh6DG134800
rosa_wichuraiana	Rw6G012970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	374
AciI	CCGC	1 cut(s)	1013
AclWI	GGATC	3 cut(s)	438, 536, 904
AcoI	YGGCCR	1 cut(s)	156
AcsI	RAATTY	4 cut(s)	463, 522, 756, 855
AcuI	CTGAAG	2 cut(s)	275, 782
AfaI	GTAC	1 cut(s)	72
AfiI	CCNNNNNNNGG	2 cut(s)	67, 919
AgsI	TTSAA	6 cut(s)	229, 287, 308, 782, 899, 971
AjnI	CCWGG	1 cut(s)	667
AluBI	AGCT	5 cut(s)	90, 298, 470, 797, 820
AluI	AGCT	5 cut(s)	90, 298, 470, 797, 820
Alw26I	GTCTC	1 cut(s)	555
AlwI	GGATC	3 cut(s)	438, 536, 904
AlwNI	CAGNNNCTG	1 cut(s)	473
AoxI	GGCC	5 cut(s)	137, 143, 156, 530, 765
ApeKI	GCWGC	2 cut(s)	350, 937
ApoI	RAATTY	4 cut(s)	463, 522, 756, 855
AseI	ATTAAT	1 cut(s)	560
AspS9I	GGNCC	1 cut(s)	868
AsuC2I	CCSGG	1 cut(s)	68
AsuHPI	GGTGA	2 cut(s)	50, 863
AvaII	GGWCC	1 cut(s)	868
AxyI	CCTNAGG	1 cut(s)	801
BbvCI	CCTCAGC	1 cut(s)	216
BbvI	GCAGC	2 cut(s)	362, 949
BccI	CCATC	3 cut(s)	160, 650, 824
BceAI	ACGGC	2 cut(s)	359, 979
BciT130I	CCWGG	1 cut(s)	669
BciVI	GTATCC	1 cut(s)	333
BcnI	CCSGG	1 cut(s)	68
BcoDI	GTCTC	1 cut(s)	555
BfaI	CTAG	2 cut(s)	537, 1001
BfmI	CTRYAG	2 cut(s)	237, 501
BfuAI	ACCTGC	1 cut(s)	374
BfuI	GTATCC	1 cut(s)	333
BisI	GCNGC	3 cut(s)	351, 938, 1013
BlsI	GCNGC	3 cut(s)	352, 939, 1014
Bme1390I	CCNGG	2 cut(s)	68, 669
Bme18I	GGWCC	1 cut(s)	868
BmgT120I	GGNCC	1 cut(s)	868
BmrFI	CCNGG	2 cut(s)	68, 669
BmsI	GCATC	3 cut(s)	38, 202, 262
Bpu10I	CCTNAGC	1 cut(s)	216
BpuEI	CTTGAG	2 cut(s)	467, 695
BpuMI	CCSGG	1 cut(s)	68
BsaBI	GATNNNNATC	1 cut(s)	276
BsaJI	CCNNGG	3 cut(s)	140, 668, 768
Bsc4I	CCNNNNNNNGG	2 cut(s)	67, 919
Bse1I	ACTGG	1 cut(s)	606
Bse21I	CCTNAGG	1 cut(s)	801
Bse3DI	GCAATG	1 cut(s)	73
Bse8I	GATNNNNATC	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	669
BseDI	CCNNGG	3 cut(s)	140, 668, 768
BseGI	GGATG	4 cut(s)	135, 277, 610, 757
BseJI	GATNNNNATC	1 cut(s)	276
BseLI	CCNNNNNNNGG	2 cut(s)	67, 919
BseMI	GCAATG	1 cut(s)	73
BseMII	CTCAG	4 cut(s)	207, 537, 792, 942
BseNI	ACTGG	1 cut(s)	606
BseRI	GAGGAG	3 cut(s)	33, 196, 785
BseXI	GCAGC	2 cut(s)	362, 949
BsgI	GTGCAG	1 cut(s)	219
BshFI	GGCC	5 cut(s)	139, 145, 158, 532, 767
BsiSI	CCGG	1 cut(s)	68
BslFI	GGGAC	1 cut(s)	16
BslI	CCNNNNNNNGG	2 cut(s)	67, 919
BsmAI	GTCTC	1 cut(s)	555
BsmFI	GGGAC	1 cut(s)	16
BsmI	GAATGC	2 cut(s)	224, 966
BsnI	GGCC	5 cut(s)	139, 145, 158, 532, 767
Bsp143I	GATC	4 cut(s)	192, 430, 541, 909
BspACI	CCGC	1 cut(s)	1013
BspANI	GGCC	5 cut(s)	139, 145, 158, 532, 767
BspCNI	CTCAG	4 cut(s)	208, 538, 793, 943
BspMI	ACCTGC	1 cut(s)	374
BspPI	GGATC	3 cut(s)	438, 536, 904
BsrDI	GCAATG	1 cut(s)	73
BsrI	ACTGG	1 cut(s)	606
BssECI	CCNNGG	3 cut(s)	140, 668, 768
BssMI	GATC	4 cut(s)	192, 430, 541, 909
Bst2UI	CCWGG	1 cut(s)	669
Bst4CI	ACNGT	2 cut(s)	173, 238
Bst6I	CTCTTC	1 cut(s)	173
BstC8I	GCNNGC	2 cut(s)	348, 1010
BstDEI	CTNAG	5 cut(s)	216, 546, 638, 801, 951
BstF5I	GGATG	4 cut(s)	135, 277, 610, 757
BstKTI	GATC	4 cut(s)	195, 433, 544, 912
BstMAI	GTCTC	1 cut(s)	555
BstMBI	GATC	4 cut(s)	192, 430, 541, 909
BstMWI	GCNNNNNNNGC	1 cut(s)	221
BstNI	CCWGG	1 cut(s)	669
BstSCI	CCNGG	2 cut(s)	66, 667
BstSFI	CTRYAG	2 cut(s)	237, 501
BstV1I	GCAGC	2 cut(s)	362, 949
BstX2I	RGATCY	1 cut(s)	541
BstXI	CCANNNNNNTGG	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	541
Bsu36I	CCTNAGG	1 cut(s)	801
BsuI	GTATCC	1 cut(s)	333
BsuRI	GGCC	5 cut(s)	139, 145, 158, 532, 767
BtsCI	GGATG	4 cut(s)	135, 277, 610, 757
BtsIMutI	CAGTG	2 cut(s)	533, 576
BveI	ACCTGC	1 cut(s)	374
Cac8I	GCNNGC	2 cut(s)	348, 1010
CaiI	CAGNNNCTG	1 cut(s)	473
Cfr13I	GGNCC	1 cut(s)	868
Csp6I	GTAC	1 cut(s)	71
CviQI	GTAC	1 cut(s)	71
DdeI	CTNAG	5 cut(s)	216, 546, 638, 801, 951
DpnI	GATC	4 cut(s)	194, 432, 543, 911
DpnII	GATC	4 cut(s)	192, 430, 541, 909
EaeI	YGGCCR	1 cut(s)	156
Eam1104I	CTCTTC	1 cut(s)	173
EarI	CTCTTC	1 cut(s)	173
Eco47I	GGWCC	1 cut(s)	868
Eco57I	CTGAAG	2 cut(s)	275, 782
Eco81I	CCTNAGG	1 cut(s)	801
EcoO109I	RGGNCCY	1 cut(s)	868
EcoRII	CCWGG	1 cut(s)	667
FalI	AAGNNNNNCTT	4 cut(s)	79, 111, 600, 632
FaqI	GGGAC	1 cut(s)	16
Fnu4HI	GCNGC	3 cut(s)	351, 938, 1013
FokI	GGATG	4 cut(s)	142, 284, 617, 764
Fsp4HI	GCNGC	3 cut(s)	351, 938, 1013
FspBI	CTAG	2 cut(s)	537, 1001
GluI	GCNGC	3 cut(s)	351, 938, 1013
HaeIII	GGCC	5 cut(s)	139, 145, 158, 532, 767
HapII	CCGG	1 cut(s)	68
HindIII	AAGCTT	2 cut(s)	88, 296
HinfI	GANTC	3 cut(s)	490, 548, 904
HpaII	CCGG	1 cut(s)	68
HphI	GGTGA	2 cut(s)	50, 863
Hpy166II	GTNNAC	1 cut(s)	442
Hpy188I	TCNGA	9 cut(s)	294, 376, 495, 622, 762, 909, 914, 952, 960
Hpy188III	TCNNGA	5 cut(s)	209, 545, 779, 800, 975
Hpy8I	GTNNAC	1 cut(s)	442
HpyAV	CCTTC	3 cut(s)	587, 602, 757
HpyCH4III	ACNGT	2 cut(s)	173, 238
HpyCH4IV	ACGT	1 cut(s)	730
HpyCH4V	TGCA	5 cut(s)	200, 350, 369, 700, 740
HpyF10VI	GCNNNNNNNGC	1 cut(s)	221
HpyF3I	CTNAG	5 cut(s)	216, 546, 638, 801, 951
HpySE526I	ACGT	1 cut(s)	730
Kzo9I	GATC	4 cut(s)	192, 430, 541, 909
LmnI	GCTCC	1 cut(s)	802
LpnPI	CCDG	9 cut(s)	81, 379, 558, 587, 654, 681, 813, 851, 947
Lsp1109I	GCAGC	2 cut(s)	362, 949
LweI	GCATC	3 cut(s)	38, 202, 262
MaeI	CTAG	2 cut(s)	537, 1001
MaeII	ACGT	1 cut(s)	730
MaeIII	GTNAC	1 cut(s)	684
MalI	GATC	4 cut(s)	194, 432, 543, 911
MboI	GATC	4 cut(s)	192, 430, 541, 909
MboII	GAAGA	5 cut(s)	190, 389, 410, 665, 818
MfeI	CAATTG	2 cut(s)	282, 840
MflI	RGATCY	1 cut(s)	541
MlyI	GAGTC	2 cut(s)	557, 898
MseI	TTAA	4 cut(s)	324, 555, 560, 792
MspI	CCGG	1 cut(s)	68
MspR9I	CCNGG	2 cut(s)	68, 669
MunI	CAATTG	2 cut(s)	282, 840
Mva1269I	GAATGC	2 cut(s)	224, 966
MvaI	CCWGG	1 cut(s)	669
MwoI	GCNNNNNNNGC	1 cut(s)	221
NciI	CCSGG	1 cut(s)	68
NdeII	GATC	4 cut(s)	192, 430, 541, 909
NmeAIII	GCCGAG	2 cut(s)	165, 793
PctI	GAATGC	2 cut(s)	224, 966
PfeI	GAWTC	1 cut(s)	490
PkrI	GCNGC	3 cut(s)	352, 939, 1014
PleI	GAGTC	2 cut(s)	556, 898
PpsI	GAGTC	2 cut(s)	556, 898
PpuMI	RGGWCCY	1 cut(s)	868
PshBI	ATTAAT	1 cut(s)	560
Psp5II	RGGWCCY	1 cut(s)	868
Psp6I	CCWGG	1 cut(s)	667
PspGI	CCWGG	1 cut(s)	667
PspPI	GGNCC	1 cut(s)	868
PspPPI	RGGWCCY	1 cut(s)	868
PstNI	CAGNNNCTG	1 cut(s)	473
PsuI	RGATCY	1 cut(s)	541
RsaI	GTAC	1 cut(s)	72
RsaNI	GTAC	1 cut(s)	71
SaqAI	TTAA	4 cut(s)	324, 555, 560, 792
SatI	GCNGC	3 cut(s)	351, 938, 1013
Sau3AI	GATC	4 cut(s)	192, 430, 541, 909
Sau96I	GGNCC	1 cut(s)	868
SchI	GAGTC	2 cut(s)	557, 898
ScrFI	CCNGG	2 cut(s)	68, 669
SfaNI	GCATC	3 cut(s)	38, 202, 262
SfcI	CTRYAG	2 cut(s)	237, 501
SinI	GGWCC	1 cut(s)	868
SmlI	CTYRAG	2 cut(s)	482, 674
SmoI	CTYRAG	2 cut(s)	482, 674
SsiI	CCGC	1 cut(s)	1013
SspMI	CTAG	2 cut(s)	537, 1001
StyD4I	CCNGG	2 cut(s)	66, 667
TaaI	ACNGT	2 cut(s)	173, 238
TaiI	ACGT	1 cut(s)	733
TaqI	TCGA	4 cut(s)	46, 246, 828, 974
TauI	GCSGC	1 cut(s)	1015
TfiI	GAWTC	1 cut(s)	490
Tru1I	TTAA	4 cut(s)	324, 555, 560, 792
Tru9I	TTAA	4 cut(s)	324, 555, 560, 792
TscAI	CASTG	2 cut(s)	533, 583
TseI	GCWGC	2 cut(s)	350, 937
TspDTI	ATGAA	4 cut(s)	411, 468, 621, 768
TspGWI	ACGGA	3 cut(s)	140, 916, 932
TspRI	CASTG	2 cut(s)	533, 583
VpaK11BI	GGWCC	1 cut(s)	868
VspI	ATTAAT	1 cut(s)	560
XapI	RAATTY	4 cut(s)	463, 522, 756, 855
XspI	CTAG	2 cut(s)	537, 1001

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.