Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0007265

Physical Location & Seq

Genomic Coordinates Reverse (-)

9746373 .. 9752019

Gene Structure 5647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g11180.t9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1365 bp

ATGGAGCTTGCTGATGAGCTACAAACCAATGGAGAGGGAGAGGAAATGGATAGAGAGCCCTTGCAAGAGCTTCCTCGCAGGGAGCCTCATCTCTACCGGAACCACTTTGGAGGCACGGTGAGGAGGAAAGCCTATATTTTTGATGGGCATGGGGACTTTTACAATAAGGAATGGGATCTTACAGAGGGTAGAGGAAATGAGTTTTGTTGGTATCATGTAGAGCTTCCAAAAGGACCTCAGAAACTTTCTCAATCTGCACAACAACTCATTGGTGTTCTTTGCCCGCCTTTGAAACTCCAGGACATTCTCTCGCTTGTCAGCAATGGACCCTTTTGTGGACATGTCGATGGGGCTCTTGTATTCAGAGTCAACTCCCCAGGCCCTCCTGCCAGTGATTTCACATTCAGAATTGCTGCAAGAATTACTGAACACTCGGTGATTACTGTGTCTTTAGGCCGTGTCCCCAGATTGGGTTTCTCGCCAGTAGGCGAGTCTCTTCTCTCGGAGATTCCTAGTGTGGAGAGTCCCACTAACCTTAGAGGAGAGCAGAAGGAAAGGGATGGGATTGTGATAAGGGAGCATGTTCTTGAGTTCTTACTGACAATGAATCATTCTGAAGAGGCTGATAATCCCGTGCCAAAATCTGTCTCCAATCTTGTGGTTCATATTATTGACACGCATGTTGATCACCTCCAAGATGTTGTTACTAAACTTGAAATAGAATTGGATTCCGTTGAGCTTGAGCTGGATAAAGGTGGTTTTGCTTTGAAGAAACAAATGCTAGATGATAGAAGATTTCCTAAAATGCATCTAAATCTGCAGCGCCTTTTGCAGGTGATTGCTCATGGGGAGCAAGTTTTTCCTCGGGTCAAAGAAAAATGTTCTACCAAACAATGGTTTTCCGGTGAAGATGTTAACTCTCTCGAAGAGCTGACTGGACGGTTGAGGAGGCTAAAGGATAATGTAGGGTTTATAGCTAATCGTGTCACAGCAATACAGGCTGGTTTAGACAGCTGGCAAGCTGAGCAAATAAACAAGAAACTATATTATCTCTCTTTCCTCTCTATTGTATTCCTTCCTCTATCTATCATTACTGGAGTGTTTGGTATGAATGTGGGCGGAGTTCCATGGACAGGACAGAACGACCCAACATTGAAGAATGGTTTCCGTAATGTGATGTTACTTTGCATTTTTATGCTACTTCTAGCTCTGCTATGCTTCAGTTTTCCTGCTCTTTATAGCAGGATAGTTACTTGGCAAAGGAGAAGAGTCCTGAGGAGAAGCTGGTCCCTCAACAGGAAGTCATTTATCAGTAGAACCCATGGAATTGGAGTTCAAGAAAGAAGGGGCTACCTTCGGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

455

Amino Acids

51.69

Weight (kDa)

7.71

Isoelectric Point (pI)

46.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04305
fragaria_vesca	FvH4_2g11180 FvH4_2g11180 FvH4_2g11180 FvH4_2g11180 FvH4_2g11180 FvH4_2g11180 FvH4_2g11180 FvH4_2g11180
malus_domestica	MD05G1049600.v1.1 MD10G1056700.v1.1
prunus_persica	Prupe.8G074900_v2.0.a1 Prupe.8G074900_v2.0.a1
pyrus_communis	pycom10g04360
rosa_chinensis	RchiOBHm_Chr6g0269501
rosa_laevigata	RLG00000013846
rosa_multiflora	Rmu_sc0010883.1_g000007
rosa_roxburghii	Rroxscaffold_7G00198670
rosa_rugosa	Rorug06G0048700 Rorug06G0048800
rosa_samantha	Rh6AG168700 Rh6BG174000 Rh6CG168300 Rh6DG160300
rosa_wichuraiana	Rw6G014520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	823
Acc36I	ACCTGC	1 cut(s)	823
AccB7I	CCANNNNNTGG	1 cut(s)	894
AciI	CCGC	2 cut(s)	284, 1119
AclWI	GGATC	1 cut(s)	183
AcuI	CTGAAG	2 cut(s)	636, 1204
AdeI	CACNNNGTG	1 cut(s)	436
AfiI	CCNNNNNNNGG	7 cut(s)	335, 469, 470, 832, 894, 1133, 1296
AflIII	ACRYGT	1 cut(s)	340
AgsI	TTSAA	5 cut(s)	292, 716, 769, 1156, 1337
AjnI	CCWGG	2 cut(s)	297, 376
AloI	GAACNNNNNNTCC	2 cut(s)	1317, 1349
Alw26I	GTCTC	2 cut(s)	498, 652
AlwI	GGATC	1 cut(s)	183
Ama87I	CYCGRG	1 cut(s)	864
AoxI	GGCC	2 cut(s)	379, 454
ApeKI	GCWGC	2 cut(s)	413, 820
Asp700I	GAANNNNTTC	1 cut(s)	1163
AspLEI	GCGC	1 cut(s)	825
AspS9I	GGNCC	4 cut(s)	233, 326, 380, 1287
AsuHPI	GGTGA	5 cut(s)	130, 448, 680, 847, 917
AvaI	CYCGRG	1 cut(s)	864
AvaII	GGWCC	3 cut(s)	233, 326, 1287
AxyI	CCTNAGG	1 cut(s)	1274
BanII	GRGCYC	2 cut(s)	60, 355
BbvI	GCAGC	2 cut(s)	400, 832
BccI	CCATC	3 cut(s)	137, 341, 554
BceAI	ACGGC	1 cut(s)	441
BciT130I	CCWGG	2 cut(s)	299, 378
BclI	TGATCA	1 cut(s)	685
BcoDI	GTCTC	2 cut(s)	498, 652
BfaI	CTAG	3 cut(s)	513, 782, 1205
BfmI	CTRYAG	1 cut(s)	818
BfoI	RGCGCY	1 cut(s)	826
BfuAI	ACCTGC	1 cut(s)	823
BisI	GCNGC	2 cut(s)	414, 821
BlpI	GCTNAGC	1 cut(s)	1023
BlsI	GCNGC	2 cut(s)	415, 822
Bme1390I	CCNGG	2 cut(s)	299, 378
Bme18I	GGWCC	3 cut(s)	233, 326, 1287
BmeT110I	CYCGRG	1 cut(s)	864
BmgT120I	GGNCC	4 cut(s)	233, 326, 380, 1287
BmiI	GGNNCC	4 cut(s)	84, 101, 328, 1289
BmrFI	CCNGG	2 cut(s)	299, 378
BmsI	GCATC	1 cut(s)	817
BpmI	CTGGAG	2 cut(s)	281, 1116
Bpu1102I	GCTNAGC	1 cut(s)	1023
BpuEI	CTTGAG	2 cut(s)	608, 761
BsaJI	CCNNGG	4 cut(s)	376, 863, 1127, 1321
BsaWI	WCCGGW	2 cut(s)	96, 902
BsaXI	ACNNNNNCTCC	2 cut(s)	102, 132
Bsc4I	CCNNNNNNNGG	7 cut(s)	335, 469, 470, 832, 894, 1133, 1296
Bse1I	ACTGG	4 cut(s)	390, 482, 940, 1099
Bse21I	CCTNAGG	1 cut(s)	1274
Bse3DI	GCAATG	1 cut(s)	328
BseBI	CCWGG	2 cut(s)	299, 378
BseDI	CCNNGG	4 cut(s)	376, 863, 1127, 1321
BseGI	GGATG	1 cut(s)	565
BseLI	CCNNNNNNNGG	7 cut(s)	335, 469, 470, 832, 894, 1133, 1296
BseMI	GCAATG	1 cut(s)	328
BseMII	CTCAG	3 cut(s)	251, 1014, 1265
BseNI	ACTGG	4 cut(s)	390, 482, 940, 1099
BseRI	GAGGAG	4 cut(s)	136, 555, 961, 1291
BseXI	GCAGC	2 cut(s)	400, 832
BsgI	GTGCAG	1 cut(s)	240
BshFI	GGCC	2 cut(s)	381, 456
BsiHKCI	CYCGRG	1 cut(s)	864
BsiSI	CCGG	2 cut(s)	97, 903
BslFI	GGGAC	4 cut(s)	167, 446, 510, 1273
BslI	CCNNNNNNNGG	7 cut(s)	335, 469, 470, 832, 894, 1133, 1296
BsmAI	GTCTC	2 cut(s)	498, 652
BsmFI	GGGAC	4 cut(s)	167, 446, 510, 1273
BsnI	GGCC	2 cut(s)	381, 456
BsoBI	CYCGRG	1 cut(s)	864
Bsp1286I	GDGCHC	2 cut(s)	60, 355
Bsp143I	GATC	2 cut(s)	175, 685
Bsp1720I	GCTNAGC	1 cut(s)	1023
Bsp19I	CCATGG	2 cut(s)	1127, 1321
BspACI	CCGC	2 cut(s)	284, 1119
BspANI	GGCC	2 cut(s)	381, 456
BspCNI	CTCAG	3 cut(s)	250, 1015, 1266
BspLI	GGNNCC	4 cut(s)	84, 101, 328, 1289
BspMAI	CTGCAG	1 cut(s)	822
BspMI	ACCTGC	1 cut(s)	823
BspPI	GGATC	1 cut(s)	183
BspQI	GCTCTTC	1 cut(s)	921
BsrDI	GCAATG	1 cut(s)	328
BsrI	ACTGG	4 cut(s)	390, 482, 940, 1099
BssECI	CCNNGG	4 cut(s)	376, 863, 1127, 1321
BssMI	GATC	2 cut(s)	175, 685
BssT1I	CCWWGG	2 cut(s)	1127, 1321
Bst2UI	CCWGG	2 cut(s)	299, 378
Bst4CI	ACNGT	3 cut(s)	118, 445, 942
Bst6I	CTCTTC	4 cut(s)	501, 612, 921, 1261
BstC8I	GCNNGC	4 cut(s)	9, 284, 1016, 1020
BstDEI	CTNAG	4 cut(s)	237, 536, 1023, 1274
BstDSI	CCRYGG	2 cut(s)	1127, 1321
BstENI	CCTNNNNNAGG	1 cut(s)	830
BstF5I	GGATG	1 cut(s)	565
BstH2I	RGCGCY	1 cut(s)	826
BstHHI	GCGC	1 cut(s)	825
BstKTI	GATC	2 cut(s)	178, 688
BstMAI	GTCTC	2 cut(s)	498, 652
BstMBI	GATC	2 cut(s)	175, 685
BstMWI	GCNNNNNNNGC	3 cut(s)	829, 998, 1024
BstNI	CCWGG	2 cut(s)	299, 378
BstNSI	RCATGY	3 cut(s)	344, 584, 683
BstSCI	CCNGG	2 cut(s)	297, 376
BstSFI	CTRYAG	1 cut(s)	818
BstV1I	GCAGC	2 cut(s)	400, 832
BstX2I	RGATCY	1 cut(s)	175
BstXI	CCANNNNNNTGG	2 cut(s)	658, 1328
BstYI	RGATCY	1 cut(s)	175
Bsu36I	CCTNAGG	1 cut(s)	1274
BsuRI	GGCC	2 cut(s)	381, 456
BtgI	CCRYGG	2 cut(s)	1127, 1321
BtsCI	GGATG	1 cut(s)	565
BtsIMutI	CAGTG	1 cut(s)	397
BveI	ACCTGC	1 cut(s)	823
Cac8I	GCNNGC	4 cut(s)	9, 284, 1016, 1020
CfoI	GCGC	1 cut(s)	825
Cfr13I	GGNCC	4 cut(s)	233, 326, 380, 1287
CviAII	CATG	8 cut(s)	149, 215, 341, 581, 680, 845, 1128, 1322
DdeI	CTNAG	4 cut(s)	237, 536, 1023, 1274
DpnI	GATC	2 cut(s)	177, 687
DpnII	GATC	2 cut(s)	175, 685
DraIII	CACNNNGTG	1 cut(s)	436
Eam1104I	CTCTTC	4 cut(s)	501, 612, 921, 1261
EarI	CTCTTC	4 cut(s)	501, 612, 921, 1261
EciI	GGCGGA	1 cut(s)	1134
Eco130I	CCWWGG	2 cut(s)	1127, 1321
Eco24I	GRGCYC	2 cut(s)	60, 355
Eco47I	GGWCC	3 cut(s)	233, 326, 1287
Eco57I	CTGAAG	2 cut(s)	636, 1204
Eco81I	CCTNAGG	1 cut(s)	1274
Eco88I	CYCGRG	1 cut(s)	864
EcoNI	CCTNNNNNAGG	1 cut(s)	830
EcoO109I	RGGNCCY	2 cut(s)	233, 380
EcoRII	CCWGG	2 cut(s)	297, 376
EcoT14I	CCWWGG	2 cut(s)	1127, 1321
EcoT22I	ATGCAT	1 cut(s)	810
EcoT38I	GRGCYC	2 cut(s)	60, 355
ErhI	CCWWGG	2 cut(s)	1127, 1321
FaeI	CATG	8 cut(s)	152, 218, 344, 584, 683, 848, 1131, 1325
FaqI	GGGAC	4 cut(s)	167, 446, 510, 1273
FatI	CATG	8 cut(s)	148, 214, 340, 580, 679, 844, 1127, 1321
FauI	CCCGC	1 cut(s)	291
FbaI	TGATCA	1 cut(s)	685
Fnu4HI	GCNGC	2 cut(s)	414, 821
FokI	GGATG	1 cut(s)	572
FriOI	GRGCYC	2 cut(s)	60, 355
Fsp4HI	GCNGC	2 cut(s)	414, 821
FspBI	CTAG	3 cut(s)	513, 782, 1205
GlaI	GCGC	1 cut(s)	824
GluI	GCNGC	2 cut(s)	414, 821
GsuI	CTGGAG	2 cut(s)	281, 1116
HaeII	RGCGCY	1 cut(s)	826
HaeIII	GGCC	2 cut(s)	381, 456
HapII	CCGG	2 cut(s)	97, 903
HhaI	GCGC	1 cut(s)	825
Hin1II	CATG	8 cut(s)	152, 218, 344, 584, 683, 848, 1131, 1325
Hin6I	GCGC	1 cut(s)	823
HinP1I	GCGC	1 cut(s)	823
HincII	GTYRAC	2 cut(s)	370, 916
HindII	GTYRAC	2 cut(s)	370, 916
HinfI	GANTC	7 cut(s)	366, 491, 508, 523, 607, 728, 1269
HpaI	GTTAAC	1 cut(s)	916
HpaII	CCGG	2 cut(s)	97, 903
HphI	GGTGA	5 cut(s)	130, 448, 680, 847, 917
Hpy166II	GTNNAC	3 cut(s)	338, 370, 916
Hpy188I	TCNGA	5 cut(s)	240, 365, 407, 505, 616
Hpy188III	TCNNGA	4 cut(s)	587, 923, 1273, 1337
Hpy8I	GTNNAC	3 cut(s)	338, 370, 916
HpyAV	CCTTC	4 cut(s)	544, 1085, 1338, 1364
HpyCH4III	ACNGT	3 cut(s)	118, 445, 942
HpyCH4V	TGCA	7 cut(s)	64, 257, 416, 808, 820, 832, 1188
HpyF10VI	GCNNNNNNNGC	3 cut(s)	829, 998, 1024
HpyF3I	CTNAG	4 cut(s)	237, 536, 1023, 1274
Hsp92II	CATG	8 cut(s)	152, 218, 344, 584, 683, 848, 1131, 1325
HspAI	GCGC	1 cut(s)	823
Ksp22I	TGATCA	1 cut(s)	685
KspAI	GTTAAC	1 cut(s)	916
Kzo9I	GATC	2 cut(s)	175, 685
LguI	GCTCTTC	1 cut(s)	921
LmnI	GCTCC	4 cut(s)	4, 82, 577, 850
Lsp1109I	GCAGC	2 cut(s)	400, 832
LweI	GCATC	1 cut(s)	817
MaeI	CTAG	3 cut(s)	513, 782, 1205
MaeIII	GTNAC	4 cut(s)	703, 985, 1179, 1249
MalI	GATC	2 cut(s)	177, 687
MboI	GATC	2 cut(s)	175, 685
MboII	GAAGA	8 cut(s)	488, 629, 781, 804, 920, 938, 1168, 1278
MflI	RGATCY	1 cut(s)	175
MhlI	GDGCHC	2 cut(s)	60, 355
MluCI	AATT	4 cut(s)	408, 420, 722, 1326
MlyI	GAGTC	4 cut(s)	375, 500, 532, 1278
Mph1103I	ATGCAT	1 cut(s)	810
MroXI	GAANNNNTTC	1 cut(s)	1163
MseI	TTAA	1 cut(s)	915
MslI	CAYNNNNRTG	2 cut(s)	345, 1193
MspA1I	CMGCKG	1 cut(s)	1014
MspI	CCGG	2 cut(s)	97, 903
MspR9I	CCNGG	2 cut(s)	299, 378
MvaI	CCWGG	2 cut(s)	299, 378
MwoI	GCNNNNNNNGC	3 cut(s)	829, 998, 1024
NcoI	CCATGG	2 cut(s)	1127, 1321
NdeII	GATC	2 cut(s)	175, 685
NlaIII	CATG	8 cut(s)	152, 218, 344, 584, 683, 848, 1131, 1325
NlaIV	GGNNCC	4 cut(s)	84, 101, 328, 1289
NmuCI	GTSAC	1 cut(s)	985
NsiI	ATGCAT	1 cut(s)	810
NspI	RCATGY	3 cut(s)	344, 584, 683
PaqCI	CACCTGC	1 cut(s)	823
PciI	ACATGT	1 cut(s)	340
PciSI	GCTCTTC	1 cut(s)	921
PdmI	GAANNNNTTC	1 cut(s)	1163
PfeI	GAWTC	3 cut(s)	508, 607, 728
PflMI	CCANNNNNTGG	1 cut(s)	894
PfoI	TCCNGGA	1 cut(s)	297
PkrI	GCNGC	2 cut(s)	415, 822
PleI	GAGTC	4 cut(s)	374, 499, 531, 1277
PpsI	GAGTC	4 cut(s)	374, 499, 531, 1277
PpuMI	RGGWCCY	1 cut(s)	233
PscI	ACATGT	1 cut(s)	340
Psp5II	RGGWCCY	1 cut(s)	233
Psp6I	CCWGG	2 cut(s)	297, 376
PspGI	CCWGG	2 cut(s)	297, 376
PspN4I	GGNNCC	4 cut(s)	84, 101, 328, 1289
PspPI	GGNCC	4 cut(s)	233, 326, 380, 1287
PspPPI	RGGWCCY	1 cut(s)	233
PstI	CTGCAG	1 cut(s)	822
PsuI	RGATCY	1 cut(s)	175
PvuII	CAGCTG	1 cut(s)	1014
RseI	CAYNNNNRTG	2 cut(s)	345, 1193
SapI	GCTCTTC	1 cut(s)	921
SaqAI	TTAA	1 cut(s)	915
SatI	GCNGC	2 cut(s)	414, 821
Sau3AI	GATC	2 cut(s)	175, 685
Sau96I	GGNCC	4 cut(s)	233, 326, 380, 1287
SchI	GAGTC	4 cut(s)	375, 500, 532, 1278
ScrFI	CCNGG	2 cut(s)	299, 378
SduI	GDGCHC	2 cut(s)	60, 355
SfaNI	GCATC	1 cut(s)	817
SfcI	CTRYAG	1 cut(s)	818
SinI	GGWCC	3 cut(s)	233, 326, 1287
SmiMI	CAYNNNNRTG	2 cut(s)	345, 1193
SmlI	CTYRAG	2 cut(s)	587, 740
SmoI	CTYRAG	2 cut(s)	587, 740
Sse9I	AATT	4 cut(s)	408, 420, 722, 1326
SsiI	CCGC	2 cut(s)	284, 1119
SspMI	CTAG	3 cut(s)	513, 782, 1205
StyD4I	CCNGG	2 cut(s)	297, 376
StyI	CCWWGG	2 cut(s)	1127, 1321
TaaI	ACNGT	3 cut(s)	118, 445, 942
TaqI	TCGA	2 cut(s)	345, 924
TasI	AATT	4 cut(s)	408, 420, 722, 1326
TfiI	GAWTC	3 cut(s)	508, 607, 728
Tru1I	TTAA	1 cut(s)	915
Tru9I	TTAA	1 cut(s)	915
TscAI	CASTG	1 cut(s)	397
TseFI	GTSAC	1 cut(s)	985
TseI	GCWGC	2 cut(s)	413, 820
Tsp45I	GTSAC	1 cut(s)	985
TspDTI	ATGAA	3 cut(s)	620, 653, 1124
TspGWI	ACGGA	2 cut(s)	721, 1157
TspRI	CASTG	1 cut(s)	397
Van91I	CCANNNNNTGG	1 cut(s)	894
VpaK11BI	GGWCC	3 cut(s)	233, 326, 1287
XagI	CCTNNNNNAGG	1 cut(s)	830
XceI	RCATGY	3 cut(s)	344, 584, 683
XmnI	GAANNNNTTC	1 cut(s)	1163
XspI	CTAG	3 cut(s)	513, 782, 1205
Zsp2I	ATGCAT	1 cut(s)	810

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.