MD05G1049600.v1.1

CorA-like Mg2+ transporter protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0007265
Physical Location & Seq
Forward (+)
8598057 .. 8602780
4724 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1049600.v1.1.491

Sequence Viewer

Length: 1368 bp
ATGGAGCTACCTGAAGAGGAACCCGTCACCAACGGAGAGGCGGAGGAAATGGACAGAGAGCCCTCTGCGGAGGCTCCTCTCCGGGAGCCCCACTCCTACCGGAGTCATTGTGGGGGGATGGTGAGAAAGAAAGCCTATATCTTTGATGGTTCTGGAAAGTTTTACAATAAGGAATGGGATCTGACAGAAGGTAGAGGCAATGAGTTCTGTTGGTACCATGTTGAACTTCCAAAAGGACATCAGAAGCTTTGTCAGTCTGCCCAAGACCTCATTGGCGTTCTTTGCCCGCCTTTGAAACTCCAGGATATTCTCTCTCTTGTCAGCAATGGACCATTTTGTGGGTATGTTGATGGGGCTCTAGTCTTCAGAGTCAACTCTCCCGGCCCTCCCTCTAGTGATTTCACATTTAGAATTGCCGCAAGAATTACTGAGAATTCAGTGATCACTGTGAGTTTGGGCCGCGTTCCCAGATTGGGTTTCTCACCGGTGGGTCAATCTCTTCTCTCGGAGATTCCTAGTGTGGAGAGTCCCTCGTATCATAGAGGAGAGCAGAGGGAAAGGAGCGGGATTGTCATAGGGGAGCATGTTCTTGAGTTCTTATTGACAATGAATCACTCTGAGGAAGCCGATAATCCTGTGCCAAAATCTGTCTCAAATCTTGTAGTTCATATTGTTGACACGCATGTGGATCACCTCCAAGATGTTGTGACTAAACTTGAGATAGAGTTGGATTCCGTTGAGCTTCAGATGGATAAAGGTGGGTTTGCTTTAAAGAAACAAATGCTGGATGACAGGAGATTTCCCAAAATGCATCTAAATCTGCAGCGGCTCCTACAGGAGATTGCTCATGGGGAGCAAGTTTTTCCTCGTGTCAAAGAAAGATGTTCCTCAAAGCAATGGTTTTCGAGTGAAGATATTGCCTCACTTGAAGAGCTGATCGGACGGTTGAGGAGGCTAAAGGAGAATGTAGGCTTTATAGCAAATCGTGTCACGGCAATACAGGCTGGTCTAGACAGCTGGCAAGCTGAGCAGATAAACAGGAAACTGTATTATCTCTCTTTCCTCTCTATAATATTCCTTCCTTTATCCATCATTACTGGAGTGTTCGGCATGAATGTGGGGGGAGTTCCATGGACAGGACAAAAAGACCCAACGTTGAAAGATGGTTTCCGTAATGTCATGTTACTCTGTGTAGCTATGCTTCTTTTGGCACTTCTCTGCTTCAGCTTTCCTGTTCTTTATACCCGAATAGCTGCTTGGCACAGAAGCAGGGTCATGAAGAGGAGCTGGTCCCTCAATAGGAAGTCATTCCTAAAGAGAACCCATGGAATTGGAGTTCAAGAAAGAAGGGGCTACCTCCGCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CorA

Protein Analysis

456

Amino Acids

51.54

Weight (kDa)

7.66

Isoelectric Point (pI)

50.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CorA PF01544 210 - 408 1.7e-26 CorA-like Mg2+ transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 213
AccB1I GGYRCC 1 cut(s) 213
AccB7I CCANNNNNTGG 1 cut(s) 338
AccBSI CCGCTC 1 cut(s) 564
AccII CGCG 1 cut(s) 462
AciI CCGC 8 cut(s) 41, 68, 287, 417, 460, 564, 826, 1360
AclI AACGTT 1 cut(s) 1154
AclWI GGATC 2 cut(s) 186, 696
AcsI RAATTY 1 cut(s) 433
AcuI CTGAAG 4 cut(s) 33, 349, 728, 1207
AfaI GTAC 1 cut(s) 215
AfiI CCNNNNNNNGG 4 cut(s) 338, 473, 1136, 1299
AgeI ACCGGT 1 cut(s) 484
AgsI TTSAA 5 cut(s) 224, 295, 929, 1159, 1340
AjnI CCWGG 1 cut(s) 300
AjuI GAANNNNNNNTTGG 2 cut(s) 1240, 1272
AleI CACNNNNGTG 1 cut(s) 683
AloI GAACNNNNNNTCC 2 cut(s) 1320, 1352
Alw26I GTCTC 1 cut(s) 655
AlwI GGATC 2 cut(s) 186, 696
AoxI GGCC 2 cut(s) 382, 457
ApeKI GCWGC 2 cut(s) 823, 1253
ApoI RAATTY 1 cut(s) 433
AsiGI ACCGGT 1 cut(s) 484
Asp700I GAANNNNTTC 1 cut(s) 1307
Asp718I GGTACC 1 cut(s) 213
AspS9I GGNCC 4 cut(s) 329, 383, 457, 1290
AsuC2I CCSGG 2 cut(s) 83, 381
AsuHPI GGTGA 4 cut(s) 19, 133, 474, 683
AvaII GGWCC 2 cut(s) 329, 1290
BanI GGYRCC 1 cut(s) 213
BanII GRGCYC 3 cut(s) 63, 90, 358
BarI GAAGNNNNNNTAC 2 cut(s) 1185, 1217
BauI CACGAG 1 cut(s) 867
BbsI GAAGAC 1 cut(s) 355
BbvI GCAGC 2 cut(s) 835, 1240
BccI CCATC 6 cut(s) 112, 140, 344, 742, 1097, 1157
BceAI ACGGC 1 cut(s) 1008
BciT130I CCWGG 1 cut(s) 302
BclI TGATCA 1 cut(s) 441
BcnI CCSGG 2 cut(s) 83, 381
BcoDI GTCTC 1 cut(s) 655
BfaI CTAG 4 cut(s) 359, 393, 516, 1010
BfmI CTRYAG 2 cut(s) 821, 833
BisI GCNGC 5 cut(s) 417, 460, 824, 827, 1254
BlpI GCTNAGC 1 cut(s) 1026
BlsI GCNGC 5 cut(s) 418, 461, 825, 828, 1255
Bme1390I CCNGG 3 cut(s) 83, 302, 381
Bme18I GGWCC 2 cut(s) 329, 1290
BmgT120I GGNCC 4 cut(s) 329, 383, 457, 1290
BmiI GGNNCC 6 cut(s) 21, 75, 87, 215, 830, 1292
BmrFI CCNGG 3 cut(s) 83, 302, 381
BmsI GCATC 1 cut(s) 820
BpiI GAAGAC 1 cut(s) 355
BplI GAGNNNNNCTC 4 cut(s) 77, 109, 515, 547
BpmI CTGGAG 2 cut(s) 284, 1119
Bpu1102I GCTNAGC 1 cut(s) 1026
BpuEI CTTGAG 2 cut(s) 611, 737
BpuMI CCSGG 2 cut(s) 83, 381
BsaJI CCNNGG 2 cut(s) 1130, 1324
BsaWI WCCGGW 2 cut(s) 99, 484
BsaXI ACNNNNNCTCC 2 cut(s) 94, 124
Bsc4I CCNNNNNNNGG 4 cut(s) 338, 473, 1136, 1299
Bse118I RCCGGY 1 cut(s) 484
Bse1I ACTGG 1 cut(s) 1102
Bse3DI GCAATG 3 cut(s) 205, 331, 902
BseBI CCWGG 1 cut(s) 302
BseDI CCNNGG 2 cut(s) 1130, 1324
BseGI GGATG 2 cut(s) 123, 793
BseLI CCNNNNNNNGG 4 cut(s) 338, 473, 1136, 1299
BseMI GCAATG 3 cut(s) 205, 331, 902
BseMII CTCAG 3 cut(s) 420, 609, 1017
BseNI ACTGG 1 cut(s) 1102
BseRI GAGGAG 4 cut(s) 66, 558, 964, 1297
BseXI GCAGC 2 cut(s) 835, 1240
Bsh1236I CGCG 1 cut(s) 462
BshFI GGCC 2 cut(s) 384, 459
BshNI GGYRCC 1 cut(s) 213
BshTI ACCGGT 1 cut(s) 484
BsiSI CCGG 4 cut(s) 82, 100, 381, 485
BslFI GGGAC 2 cut(s) 513, 1276
BslI CCNNNNNNNGG 4 cut(s) 338, 473, 1136, 1299
BsmAI GTCTC 1 cut(s) 655
BsmFI GGGAC 2 cut(s) 513, 1276
BsnI GGCC 2 cut(s) 384, 459
Bsp1286I GDGCHC 3 cut(s) 63, 90, 358
Bsp143I GATC 4 cut(s) 178, 441, 688, 936
Bsp1720I GCTNAGC 1 cut(s) 1026
Bsp19I CCATGG 2 cut(s) 1130, 1324
BspACI CCGC 8 cut(s) 41, 68, 287, 417, 460, 564, 826, 1360
BspANI GGCC 2 cut(s) 384, 459
BspCNI CTCAG 3 cut(s) 421, 610, 1018
BspFNI CGCG 1 cut(s) 462
BspHI TCATGA 1 cut(s) 1275
BspLI GGNNCC 6 cut(s) 21, 75, 87, 215, 830, 1292
BspMAI CTGCAG 1 cut(s) 825
BspPI GGATC 2 cut(s) 186, 696
BspQI GCTCTTC 1 cut(s) 924
BspT107I GGYRCC 1 cut(s) 213
BsrBI CCGCTC 1 cut(s) 564
BsrDI GCAATG 3 cut(s) 205, 331, 902
BsrFI RCCGGY 1 cut(s) 484
BsrI ACTGG 1 cut(s) 1102
BssAI RCCGGY 1 cut(s) 484
BssECI CCNNGG 2 cut(s) 1130, 1324
BssMI GATC 4 cut(s) 178, 441, 688, 936
BssSI CACGAG 1 cut(s) 867
BssT1I CCWWGG 2 cut(s) 1130, 1324
Bst2BI CACGAG 1 cut(s) 867
Bst2UI CCWGG 1 cut(s) 302
Bst4CI ACNGT 3 cut(s) 448, 945, 1047
Bst6I CTCTTC 4 cut(s) 9, 504, 924, 1274
BstC8I GCNNGC 3 cut(s) 287, 1019, 1023
BstDEI CTNAG 3 cut(s) 429, 618, 1026
BstDSI CCRYGG 2 cut(s) 1130, 1324
BstF5I GGATG 2 cut(s) 123, 793
BstFNI CGCG 1 cut(s) 462
BstKTI GATC 4 cut(s) 181, 444, 691, 939
BstMAI GTCTC 1 cut(s) 655
BstMBI GATC 4 cut(s) 178, 441, 688, 936
BstMWI GCNNNNNNNGC 4 cut(s) 282, 1001, 1027, 1359
BstNI CCWGG 1 cut(s) 302
BstNSI RCATGY 2 cut(s) 587, 686
BstSCI CCNGG 3 cut(s) 81, 300, 379
BstSFI CTRYAG 2 cut(s) 821, 833
BstUI CGCG 1 cut(s) 462
BstV1I GCAGC 2 cut(s) 835, 1240
BstV2I GAAGAC 1 cut(s) 355
BstX2I RGATCY 1 cut(s) 178
BstXI CCANNNNNNTGG 1 cut(s) 1331
BstYI RGATCY 1 cut(s) 178
BsuRI GGCC 2 cut(s) 384, 459
BtgI CCRYGG 2 cut(s) 1130, 1324
BtsCI GGATG 2 cut(s) 123, 793
BtsIMutI CAGTG 2 cut(s) 444, 444
Cac8I GCNNGC 3 cut(s) 287, 1019, 1023
CciI TCATGA 1 cut(s) 1275
Cfr10I RCCGGY 1 cut(s) 484
Cfr13I GGNCC 4 cut(s) 329, 383, 457, 1290
Csp6I GTAC 1 cut(s) 214
CspAI ACCGGT 1 cut(s) 484
CviAII CATG 9 cut(s) 218, 584, 683, 848, 1111, 1131, 1180, 1276, 1325
CviQI GTAC 1 cut(s) 214
DdeI CTNAG 3 cut(s) 429, 618, 1026
DpnI GATC 4 cut(s) 180, 443, 690, 938
DpnII GATC 4 cut(s) 178, 441, 688, 936
DraI TTTAAA 1 cut(s) 771
Eam1104I CTCTTC 4 cut(s) 9, 504, 924, 1274
EarI CTCTTC 4 cut(s) 9, 504, 924, 1274
EciI GGCGGA 1 cut(s) 56
Eco130I CCWWGG 2 cut(s) 1130, 1324
Eco24I GRGCYC 3 cut(s) 63, 90, 358
Eco47I GGWCC 2 cut(s) 329, 1290
Eco57I CTGAAG 4 cut(s) 33, 349, 728, 1207
EcoRI GAATTC 1 cut(s) 433
EcoRII CCWGG 1 cut(s) 300
EcoT14I CCWWGG 2 cut(s) 1130, 1324
EcoT22I ATGCAT 1 cut(s) 813
EcoT38I GRGCYC 3 cut(s) 63, 90, 358
ErhI CCWWGG 2 cut(s) 1130, 1324
FaeI CATG 9 cut(s) 221, 587, 686, 851, 1114, 1134, 1183, 1279, 1328
FaqI GGGAC 2 cut(s) 513, 1276
FatI CATG 9 cut(s) 217, 583, 682, 847, 1110, 1130, 1179, 1275, 1324
FauI CCCGC 2 cut(s) 294, 557
FbaI TGATCA 1 cut(s) 441
Fnu4HI GCNGC 5 cut(s) 417, 460, 824, 827, 1254
FokI GGATG 2 cut(s) 130, 800
FriOI GRGCYC 3 cut(s) 63, 90, 358
Fsp4HI GCNGC 5 cut(s) 417, 460, 824, 827, 1254
FspBI CTAG 4 cut(s) 359, 393, 516, 1010
GluI GCNGC 5 cut(s) 417, 460, 824, 827, 1254
GsuI CTGGAG 2 cut(s) 284, 1119
HaeIII GGCC 2 cut(s) 384, 459
HapII CCGG 4 cut(s) 82, 100, 381, 485
Hin1II CATG 9 cut(s) 221, 587, 686, 851, 1114, 1134, 1183, 1279, 1328
HincII GTYRAC 2 cut(s) 373, 676
HindII GTYRAC 2 cut(s) 373, 676
HindIII AAGCTT 1 cut(s) 245
HinfI GANTC 6 cut(s) 103, 369, 511, 526, 610, 731
HpaII CCGG 4 cut(s) 82, 100, 381, 485
HphI GGTGA 4 cut(s) 19, 133, 474, 683
Hpy166II GTNNAC 2 cut(s) 373, 676
Hpy188I TCNGA 7 cut(s) 183, 243, 368, 508, 619, 747, 941
Hpy188III TCNNGA 5 cut(s) 153, 590, 1010, 1276, 1340
Hpy8I GTNNAC 2 cut(s) 373, 676
HpyAV CCTTC 3 cut(s) 182, 1088, 1341
HpyCH4III ACNGT 3 cut(s) 448, 945, 1047
HpyCH4IV ACGT 1 cut(s) 1154
HpyCH4V TGCA 2 cut(s) 811, 823
HpyF10VI GCNNNNNNNGC 4 cut(s) 282, 1001, 1027, 1359
HpyF3I CTNAG 3 cut(s) 429, 618, 1026
HpySE526I ACGT 1 cut(s) 1154
Hsp92II CATG 9 cut(s) 221, 587, 686, 851, 1114, 1134, 1183, 1279, 1328
KpnI GGTACC 1 cut(s) 217
Ksp22I TGATCA 1 cut(s) 441
Kzo9I GATC 4 cut(s) 178, 441, 688, 936
LguI GCTCTTC 1 cut(s) 924
LmnI GCTCC 8 cut(s) 4, 79, 85, 561, 580, 834, 853, 1284
Lsp1109I GCAGC 2 cut(s) 835, 1240
LweI GCATC 1 cut(s) 820
MaeI CTAG 4 cut(s) 359, 393, 516, 1010
MaeII ACGT 1 cut(s) 1154
MaeIII GTNAC 4 cut(s) 25, 706, 988, 1182
MalI GATC 4 cut(s) 180, 443, 690, 938
MbiI CCGCTC 1 cut(s) 564
MboI GATC 4 cut(s) 178, 441, 688, 936
MboII GAAGA 6 cut(s) 26, 355, 491, 923, 941, 1291
MflI RGATCY 1 cut(s) 178
MhlI GDGCHC 3 cut(s) 63, 90, 358
MluCI AATT 4 cut(s) 411, 423, 433, 1329
MlyI GAGTC 3 cut(s) 112, 378, 535
MmeI TCCRAC 1 cut(s) 708
Mph1103I ATGCAT 1 cut(s) 813
MroXI GAANNNNTTC 1 cut(s) 1307
MseI TTAA 1 cut(s) 770
MslI CAYNNNNRTG 2 cut(s) 683, 1115
MspA1I CMGCKG 2 cut(s) 826, 1017
MspI CCGG 4 cut(s) 82, 100, 381, 485
MspR9I CCNGG 3 cut(s) 83, 302, 381
MvaI CCWGG 1 cut(s) 302
MvnI CGCG 1 cut(s) 462
MwoI GCNNNNNNNGC 4 cut(s) 282, 1001, 1027, 1359
NciI CCSGG 2 cut(s) 83, 381
NcoI CCATGG 2 cut(s) 1130, 1324
NdeII GATC 4 cut(s) 178, 441, 688, 936
NlaIII CATG 9 cut(s) 221, 587, 686, 851, 1114, 1134, 1183, 1279, 1328
NlaIV GGNNCC 6 cut(s) 21, 75, 87, 215, 830, 1292
NmuCI GTSAC 3 cut(s) 25, 706, 988
NsiI ATGCAT 1 cut(s) 813
NspI RCATGY 2 cut(s) 587, 686
OliI CACNNNNGTG 1 cut(s) 683
PagI TCATGA 1 cut(s) 1275
PciSI GCTCTTC 1 cut(s) 924
PdmI GAANNNNTTC 1 cut(s) 1307
PfeI GAWTC 3 cut(s) 511, 610, 731
PflMI CCANNNNNTGG 1 cut(s) 338
PfoI TCCNGGA 2 cut(s) 81, 300
PinAI ACCGGT 1 cut(s) 484
PkrI GCNGC 5 cut(s) 418, 461, 825, 828, 1255
PleI GAGTC 3 cut(s) 111, 377, 534
PpsI GAGTC 3 cut(s) 111, 377, 534
Psp1406I AACGTT 1 cut(s) 1154
Psp6I CCWGG 1 cut(s) 300
PspGI CCWGG 1 cut(s) 300
PspN4I GGNNCC 6 cut(s) 21, 75, 87, 215, 830, 1292
PspPI GGNCC 4 cut(s) 329, 383, 457, 1290
PstI CTGCAG 1 cut(s) 825
PsuI RGATCY 1 cut(s) 178
PvuII CAGCTG 1 cut(s) 1017
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
RseI CAYNNNNRTG 2 cut(s) 683, 1115
SapI GCTCTTC 1 cut(s) 924
SaqAI TTAA 1 cut(s) 770
SatI GCNGC 5 cut(s) 417, 460, 824, 827, 1254
Sau3AI GATC 4 cut(s) 178, 441, 688, 936
Sau96I GGNCC 4 cut(s) 329, 383, 457, 1290
SchI GAGTC 3 cut(s) 112, 378, 535
ScrFI CCNGG 3 cut(s) 83, 302, 381
SduI GDGCHC 3 cut(s) 63, 90, 358
SfaNI GCATC 1 cut(s) 820
SfcI CTRYAG 2 cut(s) 821, 833
SgrAI CRCCGGYG 1 cut(s) 484
SinI GGWCC 2 cut(s) 329, 1290
SmiMI CAYNNNNRTG 2 cut(s) 683, 1115
SmlI CTYRAG 2 cut(s) 590, 716
SmoI CTYRAG 2 cut(s) 590, 716
Sse9I AATT 4 cut(s) 411, 423, 433, 1329
SsiI CCGC 8 cut(s) 41, 68, 287, 417, 460, 564, 826, 1360
SspI AATATT 1 cut(s) 1074
SspMI CTAG 4 cut(s) 359, 393, 516, 1010
StyD4I CCNGG 3 cut(s) 81, 300, 379
StyI CCWWGG 2 cut(s) 1130, 1324
TaaI ACNGT 3 cut(s) 448, 945, 1047
TaiI ACGT 1 cut(s) 1157
TaqI TCGA 1 cut(s) 905
TasI AATT 4 cut(s) 411, 423, 433, 1329
TauI GCSGC 3 cut(s) 419, 462, 829
TfiI GAWTC 3 cut(s) 511, 610, 731
Tru1I TTAA 1 cut(s) 770
Tru9I TTAA 1 cut(s) 770
TscAI CASTG 2 cut(s) 444, 451
TseFI GTSAC 3 cut(s) 25, 706, 988
TseI GCWGC 2 cut(s) 823, 1253
Tsp45I GTSAC 3 cut(s) 25, 706, 988
TspDTI ATGAA 4 cut(s) 623, 656, 1127, 1292
TspGWI ACGGA 3 cut(s) 48, 724, 1160
TspRI CASTG 2 cut(s) 444, 451
Van91I CCANNNNNTGG 1 cut(s) 338
VpaK11BI GGWCC 2 cut(s) 329, 1290
XapI RAATTY 1 cut(s) 433
XbaI TCTAGA 1 cut(s) 1009
XceI RCATGY 2 cut(s) 587, 686
XcmI CCANNNNNNNNNTGG 1 cut(s) 269
XmnI GAANNNNTTC 1 cut(s) 1307
XspI CTAG 4 cut(s) 359, 393, 516, 1010
Zsp2I ATGCAT 1 cut(s) 813
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.