Rh6DG160300

CorA-like Mg2+ transporter protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0007265
Physical Location & Seq
Reverse (-)
23923476 .. 23928938
5463 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG160300.1

Sequence Viewer

Length: 1371 bp
ATGGAGCTAGCTGATGAGCTACAGATCAATGGAGAGGAAGAGGGAGAGGACATGGACAGAGAGCCGTCTGCAGAGGCTCCTCGCAGAGAGCCTCATCTCTATCGGAACCATTTTGGGGGCATGGTAAGGAAGAAAGCCTATATTTTTGATGGGCACGGTGAATTTTACAATAAGGAATGGGATCTTACAGAGGGTAGAGGAAATGAGTTTTGTTGGTATCATGTAGAGCTTCCAAAAGGAAATCAGAAACTATCTCAATCTGCAGAACACCTCATTGGTGTTCTTTGCCCGCCTTTGAAACTACAGGACATTCTCTCGCTTGTCAGCAACGGACCCTTTTGTGGGCATGTCGATGGGGCTCTTGTATTCAGAGTTAACTCCCCAGGTCCTCCTGCCAGTGATTTCACATTTAGAATTGCTGCAAGAATTACTGAACACTCCGTGATTACTGTGTCTTTGGGCCGTGTCCCCAGATTGGGTTTCTCGCCAGTGGGTGAATCTCTTCTCTCAGAGATTCCTAGAGTGGAGAGTCCCTCTTATGTTAGAGGTGAGCAGAAGGAAAGGAGTGGGATTGTGATAAGGGAGCATGTTCTTGAGTTCTTATTGACGATGAATCATTCTGAAGAGGCTGATAATCCTGTGCCAAAATCTGTCTCCAATCTTGTGGTTCATATTATTGACACGCATGTTGATCACCTCCAAGATGTTGTGACTAAACTTGAAATAGAATTGGATTCCGTTGAGCTTGAGATGGATAAAGGTGGTTTTGCTTTGAAGAAACAAATGCTAGATGATAGAAGATTTCCTAAAATGCATCTAAATCTGCAGCGCCTCTTGCAGGTGATTGCTCATGGGGAGCAAGTTTTTCCTCGGGTCAAAGAAAAATGTTCTTCCAAACAATGGTTTTCCAGTGAAGATGTTAACTCTCTTGAAGAGCTGACTGGACGGTTGAGGAGGCTAAAGGATAATGTAGGGTTTATAGCAAATCGTGTCACAGCAATACAGGCTGGTCTAGACAGCTGGCAAGCTGAGCAAATAAACAGGAAACTATATTATCTCTCTTTCCTTTCTATCGTATTCCTTCCTCTATCCATCATTACTGGAGTGTTTGGCATGAATGTGGGCGGAGTTCCATGGACAGGACAAAACGACCCAACATTGAAGAATGGTTTCCGTAATGTGATGTTACTTTGCATTGTTATGCTACTTGTGGCACTGCTCTGCTTCAGTTTTCCTGCTCTTTATACCCGTATAGTTACTTGGCAAAGGAGAAGAGTCCTGAGGAGAAGCTGGTCCCTCAACAGGAAGTCATTTCTCAGTAGAACCCATGGAATTGGAGTTCAAGAAAGAAGGGGCTACCTTCGGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CorA

Protein Analysis

456

Amino Acids

51.94

Weight (kDa)

7.26

Isoelectric Point (pI)

45.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CorA PF01544 211 - 409 1e-27 CorA-like Mg2+ transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 829
Acc36I ACCTGC 1 cut(s) 829
AccB7I CCANNNNNTGG 1 cut(s) 900
AciI CCGC 2 cut(s) 290, 1125
AclWI GGATC 1 cut(s) 189
AcsI RAATTY 1 cut(s) 161
AcuI CTGAAG 2 cut(s) 642, 1210
AdeI CACNNNGTG 1 cut(s) 442
AfiI CCNNNNNNNGG 9 cut(s) 115, 341, 342, 475, 476, 838, 900, 1139, 1302
AgsI TTSAA 6 cut(s) 298, 722, 775, 932, 1162, 1343
AjnI CCWGG 1 cut(s) 382
AjuI GAANNNNNNNTTGG 2 cut(s) 258, 290
AloI GAACNNNNNNTCC 2 cut(s) 1323, 1355
AluBI AGCT 9 cut(s) 7, 11, 19, 229, 745, 937, 1020, 1028, 1290
AluI AGCT 9 cut(s) 7, 11, 19, 229, 745, 937, 1020, 1028, 1290
Alw26I GTCTC 1 cut(s) 658
AlwI GGATC 1 cut(s) 189
Ama87I CYCGRG 1 cut(s) 870
AoxI GGCC 1 cut(s) 460
ApeKI GCWGC 2 cut(s) 419, 826
ApoI RAATTY 1 cut(s) 161
Asp700I GAANNNNTTC 2 cut(s) 501, 1169
AspLEI GCGC 1 cut(s) 831
AspS9I GGNCC 4 cut(s) 332, 386, 460, 1293
AsuHPI GGTGA 5 cut(s) 170, 506, 560, 686, 853
AsuNHI GCTAGC 1 cut(s) 7
AvaI CYCGRG 1 cut(s) 870
AvaII GGWCC 3 cut(s) 332, 386, 1293
AxyI CCTNAGG 1 cut(s) 1280
BaeGI GKGCMC 1 cut(s) 156
BanII GRGCYC 1 cut(s) 361
BbvI GCAGC 2 cut(s) 406, 838
BccI CCATC 4 cut(s) 143, 347, 745, 1100
BceAI ACGGC 2 cut(s) 49, 447
BciT130I CCWGG 1 cut(s) 384
BclI TGATCA 1 cut(s) 691
BcoDI GTCTC 1 cut(s) 658
BfaI CTAG 4 cut(s) 8, 519, 788, 1013
BfmI CTRYAG 5 cut(s) 20, 69, 261, 302, 824
BfoI RGCGCY 1 cut(s) 832
BfuAI ACCTGC 1 cut(s) 829
BisI GCNGC 2 cut(s) 420, 827
BlpI GCTNAGC 1 cut(s) 1029
BlsI GCNGC 2 cut(s) 421, 828
Bme1390I CCNGG 1 cut(s) 384
Bme18I GGWCC 3 cut(s) 332, 386, 1293
BmeT110I CYCGRG 1 cut(s) 870
BmgT120I GGNCC 4 cut(s) 332, 386, 460, 1293
BmiI GGNNCC 4 cut(s) 78, 107, 334, 1295
BmrFI CCNGG 1 cut(s) 384
BmsI GCATC 1 cut(s) 823
BmtI GCTAGC 1 cut(s) 11
BplI GAGNNNNNCTC 2 cut(s) 518, 550
BpmI CTGGAG 1 cut(s) 1122
Bpu1102I GCTNAGC 1 cut(s) 1029
BpuEI CTTGAG 2 cut(s) 614, 767
BsaJI CCNNGG 4 cut(s) 382, 869, 1133, 1327
Bsc4I CCNNNNNNNGG 9 cut(s) 115, 341, 342, 475, 476, 838, 900, 1139, 1302
Bse1I ACTGG 5 cut(s) 396, 488, 909, 946, 1105
Bse21I CCTNAGG 1 cut(s) 1280
BseBI CCWGG 1 cut(s) 384
BseDI CCNNGG 4 cut(s) 382, 869, 1133, 1327
BseLI CCNNNNNNNGG 9 cut(s) 115, 341, 342, 475, 476, 838, 900, 1139, 1302
BseMII CTCAG 4 cut(s) 522, 1020, 1271, 1330
BseNI ACTGG 5 cut(s) 396, 488, 909, 946, 1105
BseRI GAGGAG 3 cut(s) 69, 967, 1297
BseSI GKGCMC 1 cut(s) 156
BseXI GCAGC 2 cut(s) 406, 838
BshFI GGCC 1 cut(s) 462
BsiHKCI CYCGRG 1 cut(s) 870
BslFI GGGAC 3 cut(s) 452, 516, 1279
BslI CCNNNNNNNGG 9 cut(s) 115, 341, 342, 475, 476, 838, 900, 1139, 1302
BsmAI GTCTC 1 cut(s) 658
BsmFI GGGAC 3 cut(s) 452, 516, 1279
BsnI GGCC 1 cut(s) 462
BsoBI CYCGRG 1 cut(s) 870
Bsp1286I GDGCHC 2 cut(s) 156, 361
Bsp143I GATC 3 cut(s) 24, 181, 691
Bsp1720I GCTNAGC 1 cut(s) 1029
Bsp19I CCATGG 2 cut(s) 1133, 1327
BspACI CCGC 2 cut(s) 290, 1125
BspANI GGCC 1 cut(s) 462
BspCNI CTCAG 4 cut(s) 521, 1021, 1272, 1329
BspLI GGNNCC 4 cut(s) 78, 107, 334, 1295
BspMAI CTGCAG 3 cut(s) 73, 265, 828
BspMI ACCTGC 1 cut(s) 829
BspOI GCTAGC 1 cut(s) 11
BspPI GGATC 1 cut(s) 189
BspQI GCTCTTC 1 cut(s) 927
BsrI ACTGG 5 cut(s) 396, 488, 909, 946, 1105
BssECI CCNNGG 4 cut(s) 382, 869, 1133, 1327
BssMI GATC 3 cut(s) 24, 181, 691
BssT1I CCWWGG 2 cut(s) 1133, 1327
Bst2UI CCWGG 1 cut(s) 384
Bst4CI ACNGT 3 cut(s) 158, 451, 948
Bst6I CTCTTC 5 cut(s) 33, 507, 618, 927, 1267
BstC8I GCNNGC 4 cut(s) 9, 290, 1022, 1026
BstDEI CTNAG 4 cut(s) 508, 1029, 1280, 1316
BstDSI CCRYGG 2 cut(s) 1133, 1327
BstENI CCTNNNNNAGG 1 cut(s) 836
BstH2I RGCGCY 1 cut(s) 832
BstHHI GCGC 1 cut(s) 831
BstKTI GATC 3 cut(s) 27, 184, 694
BstMAI GTCTC 1 cut(s) 658
BstMBI GATC 3 cut(s) 24, 181, 691
BstMWI GCNNNNNNNGC 3 cut(s) 835, 1004, 1030
BstNI CCWGG 1 cut(s) 384
BstNSI RCATGY 3 cut(s) 350, 590, 689
BstSCI CCNGG 1 cut(s) 382
BstSFI CTRYAG 5 cut(s) 20, 69, 261, 302, 824
BstSLI GKGCMC 1 cut(s) 156
BstV1I GCAGC 2 cut(s) 406, 838
BstX2I RGATCY 1 cut(s) 181
BstXI CCANNNNNNTGG 2 cut(s) 664, 1334
BstYI RGATCY 1 cut(s) 181
Bsu36I CCTNAGG 1 cut(s) 1280
BsuRI GGCC 1 cut(s) 462
BtgI CCRYGG 2 cut(s) 1133, 1327
BtsI GCAGTG 1 cut(s) 1214
BtsIMutI CAGTG 4 cut(s) 403, 495, 916, 1214
BveI ACCTGC 1 cut(s) 829
Cac8I GCNNGC 4 cut(s) 9, 290, 1022, 1026
CfoI GCGC 1 cut(s) 831
Cfr13I GGNCC 4 cut(s) 332, 386, 460, 1293
DdeI CTNAG 4 cut(s) 508, 1029, 1280, 1316
DpnI GATC 3 cut(s) 26, 183, 693
DpnII GATC 3 cut(s) 24, 181, 691
DraIII CACNNNGTG 1 cut(s) 442
Eam1104I CTCTTC 5 cut(s) 33, 507, 618, 927, 1267
EarI CTCTTC 5 cut(s) 33, 507, 618, 927, 1267
EciI GGCGGA 1 cut(s) 1140
Eco130I CCWWGG 2 cut(s) 1133, 1327
Eco24I GRGCYC 1 cut(s) 361
Eco47I GGWCC 3 cut(s) 332, 386, 1293
Eco57I CTGAAG 2 cut(s) 642, 1210
Eco81I CCTNAGG 1 cut(s) 1280
Eco88I CYCGRG 1 cut(s) 870
EcoNI CCTNNNNNAGG 1 cut(s) 836
EcoO109I RGGNCCY 1 cut(s) 386
EcoRII CCWGG 1 cut(s) 382
EcoT14I CCWWGG 2 cut(s) 1133, 1327
EcoT22I ATGCAT 1 cut(s) 816
EcoT38I GRGCYC 1 cut(s) 361
ErhI CCWWGG 2 cut(s) 1133, 1327
FaqI GGGAC 3 cut(s) 452, 516, 1279
FauI CCCGC 1 cut(s) 297
FbaI TGATCA 1 cut(s) 691
Fnu4HI GCNGC 2 cut(s) 420, 827
FriOI GRGCYC 1 cut(s) 361
Fsp4HI GCNGC 2 cut(s) 420, 827
FspBI CTAG 4 cut(s) 8, 519, 788, 1013
GlaI GCGC 1 cut(s) 830
GluI GCNGC 2 cut(s) 420, 827
GsuI CTGGAG 1 cut(s) 1122
HaeII RGCGCY 1 cut(s) 832
HaeIII GGCC 1 cut(s) 462
HhaI GCGC 1 cut(s) 831
Hin6I GCGC 1 cut(s) 829
HinP1I GCGC 1 cut(s) 829
HincII GTYRAC 2 cut(s) 376, 922
HindII GTYRAC 2 cut(s) 376, 922
HinfI GANTC 6 cut(s) 497, 514, 529, 613, 734, 1275
HpaI GTTAAC 2 cut(s) 376, 922
HphI GGTGA 5 cut(s) 170, 506, 560, 686, 853
Hpy166II GTNNAC 2 cut(s) 376, 922
Hpy188I TCNGA 5 cut(s) 105, 246, 371, 511, 622
Hpy188III TCNNGA 5 cut(s) 593, 929, 1013, 1279, 1343
Hpy8I GTNNAC 2 cut(s) 376, 922
HpyAV CCTTC 4 cut(s) 550, 1091, 1344, 1370
HpyCH4III ACNGT 3 cut(s) 158, 451, 948
HpyCH4V TGCA 7 cut(s) 71, 263, 422, 814, 826, 838, 1194
HpyF10VI GCNNNNNNNGC 3 cut(s) 835, 1004, 1030
HpyF3I CTNAG 4 cut(s) 508, 1029, 1280, 1316
HspAI GCGC 1 cut(s) 829
Ksp22I TGATCA 1 cut(s) 691
KspAI GTTAAC 2 cut(s) 376, 922
Kzo9I GATC 3 cut(s) 24, 181, 691
LguI GCTCTTC 1 cut(s) 927
LmnI GCTCC 4 cut(s) 4, 82, 583, 856
Lsp1109I GCAGC 2 cut(s) 406, 838
LweI GCATC 1 cut(s) 823
MaeI CTAG 4 cut(s) 8, 519, 788, 1013
MaeIII GTNAC 4 cut(s) 709, 991, 1185, 1255
MalI GATC 3 cut(s) 26, 183, 693
MboI GATC 3 cut(s) 24, 181, 691
MflI RGATCY 1 cut(s) 181
MhlI GDGCHC 2 cut(s) 156, 361
MluCI AATT 5 cut(s) 161, 414, 426, 728, 1332
MlyI GAGTC 2 cut(s) 538, 1284
Mph1103I ATGCAT 1 cut(s) 816
MroXI GAANNNNTTC 2 cut(s) 501, 1169
MseI TTAA 2 cut(s) 375, 921
MslI CAYNNNNRTG 3 cut(s) 351, 1118, 1199
MspA1I CMGCKG 1 cut(s) 1020
MspR9I CCNGG 1 cut(s) 384
MvaI CCWGG 1 cut(s) 384
MwoI GCNNNNNNNGC 3 cut(s) 835, 1004, 1030
NcoI CCATGG 2 cut(s) 1133, 1327
NdeII GATC 3 cut(s) 24, 181, 691
NheI GCTAGC 1 cut(s) 7
NlaIV GGNNCC 4 cut(s) 78, 107, 334, 1295
NmuCI GTSAC 2 cut(s) 709, 991
NsiI ATGCAT 1 cut(s) 816
NspI RCATGY 3 cut(s) 350, 590, 689
PaqCI CACCTGC 1 cut(s) 829
PciSI GCTCTTC 1 cut(s) 927
PdmI GAANNNNTTC 2 cut(s) 501, 1169
PfeI GAWTC 4 cut(s) 497, 514, 613, 734
PflMI CCANNNNNTGG 1 cut(s) 900
PkrI GCNGC 2 cut(s) 421, 828
PleI GAGTC 2 cut(s) 537, 1283
PpsI GAGTC 2 cut(s) 537, 1283
PpuMI RGGWCCY 1 cut(s) 386
Psp5II RGGWCCY 1 cut(s) 386
Psp6I CCWGG 1 cut(s) 382
PspGI CCWGG 1 cut(s) 382
PspN4I GGNNCC 4 cut(s) 78, 107, 334, 1295
PspPI GGNCC 4 cut(s) 332, 386, 460, 1293
PspPPI RGGWCCY 1 cut(s) 386
PstI CTGCAG 3 cut(s) 73, 265, 828
PsuI RGATCY 1 cut(s) 181
PvuII CAGCTG 1 cut(s) 1020
RseI CAYNNNNRTG 3 cut(s) 351, 1118, 1199
SapI GCTCTTC 1 cut(s) 927
SaqAI TTAA 2 cut(s) 375, 921
SatI GCNGC 2 cut(s) 420, 827
Sau3AI GATC 3 cut(s) 24, 181, 691
Sau96I GGNCC 4 cut(s) 332, 386, 460, 1293
SchI GAGTC 2 cut(s) 538, 1284
ScrFI CCNGG 1 cut(s) 384
SduI GDGCHC 2 cut(s) 156, 361
SfaNI GCATC 1 cut(s) 823
SfcI CTRYAG 5 cut(s) 20, 69, 261, 302, 824
SinI GGWCC 3 cut(s) 332, 386, 1293
SmiMI CAYNNNNRTG 3 cut(s) 351, 1118, 1199
SmlI CTYRAG 2 cut(s) 593, 746
SmoI CTYRAG 2 cut(s) 593, 746
Sse9I AATT 5 cut(s) 161, 414, 426, 728, 1332
SsiI CCGC 2 cut(s) 290, 1125
SspMI CTAG 4 cut(s) 8, 519, 788, 1013
StyD4I CCNGG 1 cut(s) 382
StyI CCWWGG 2 cut(s) 1133, 1327
TaaI ACNGT 3 cut(s) 158, 451, 948
TaqI TCGA 1 cut(s) 351
TasI AATT 5 cut(s) 161, 414, 426, 728, 1332
TfiI GAWTC 4 cut(s) 497, 514, 613, 734
Tru1I TTAA 2 cut(s) 375, 921
Tru9I TTAA 2 cut(s) 375, 921
TscAI CASTG 4 cut(s) 403, 495, 916, 1221
TseFI GTSAC 2 cut(s) 709, 991
TseI GCWGC 2 cut(s) 419, 826
Tsp45I GTSAC 2 cut(s) 709, 991
TspDTI ATGAA 3 cut(s) 626, 659, 1130
TspGWI ACGGA 4 cut(s) 345, 430, 727, 1163
TspRI CASTG 4 cut(s) 403, 495, 916, 1221
Van91I CCANNNNNTGG 1 cut(s) 900
VpaK11BI GGWCC 3 cut(s) 332, 386, 1293
XagI CCTNNNNNAGG 1 cut(s) 836
XapI RAATTY 1 cut(s) 161
XbaI TCTAGA 1 cut(s) 1012
XceI RCATGY 3 cut(s) 350, 590, 689
XmnI GAANNNNTTC 2 cut(s) 501, 1169
XspI CTAG 4 cut(s) 8, 519, 788, 1013
Zsp2I ATGCAT 1 cut(s) 816
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.