Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010883.1

Orthogroup ID

OG0007265

Physical Location & Seq

Genomic Coordinates Forward (+)

32604 .. 36225

Gene Structure 3622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010883.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

atggagctagctgatgagctacatatcaatggagaggaagagggagaggaaatggacagagagccgtctgcagaggctcctcgcagagagcctcatctctatcggaaccattttgggggcatggtgaggaagaaagcctatatttttgatgggcacggcgaattttacaataaggaatgggatcttacagagggtagaggaaatgagttttgttggtatcatgtagagcttccaaaaggaaatcagaaactatctcaatctgcagaacacctcattggtgttctttgcccgcctttgaaactacaggacattctctcgcttgtcagcaacggacccttttgtgggcatgtcgatggggctcttgtattcagagtcaactccccaggtcctcctgccagtgatttcacatttagaattgctgcaagaattactgaacactcggtgattactgtgtctttgggccgtgtccccagattgggtttctcaccagtgggtgaatctcttctctcagagattcctagagtggagagtccctcttatgttagaggtgagcagaaggaaaggagtgggattgtgataagggagcatgttcttgagttcttattgacgatgaatcattctgaagaggctgataatcctgtgccaaaatctgtctccaatcttgtggttcatattattgacacgcatgttgatcacctccaagatgttgtgactaaacttgaaatagaattggattccgttgagcttgagatggataaaggtggttttgctttgaagaaacaaatgctagatgatagaagatttcctaaaatgcatctaaatctgcagcgcctcttgcaggtgattgctcatggggagcaagtttttcctcgggtcaaagaaaaatgttcttccaaacaatggttttccagtgaagatgttaactctcttgaagagctgactggacggttgaggaggctaaaggataatgtagggtttatagcaaatcgtgtcacagcaatacaggctggtctagacagctggcaagctgagcaaataaacaggaaactatattatctctctttcctttctatcgtattccttcctctatccatcattactggagtgtttggcatgaatgtgggcggagttccatggacaggacaaaacgacccaacattgaagaatggtttccgtaatgtgatgttactttgcattgttatgctacttgtggcactgctctgcttcagttttcctgctctttatacccgtatagttacttggcaaaggagaagagtcctgaggagaagctggtccctcaacaggaagtcatttctcagtagaacccatggaattggagttcaagaaagaaggggctaccttcggctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

456

Amino Acids

51.96

Weight (kDa)

7.28

Isoelectric Point (pI)

46.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04305
fragaria_vesca	FvH4_2g11180 FvH4_2g11180 FvH4_2g11180 FvH4_2g11180 FvH4_2g11180 FvH4_2g11180 FvH4_2g11180 FvH4_2g11180
malus_domestica	MD05G1049600.v1.1 MD10G1056700.v1.1
prunus_persica	Prupe.8G074900_v2.0.a1 Prupe.8G074900_v2.0.a1
pyrus_communis	pycom10g04360
rosa_chinensis	RchiOBHm_Chr6g0269501
rosa_laevigata	RLG00000013846
rosa_multiflora	Rmu_sc0010883.1_g000007
rosa_roxburghii	Rroxscaffold_7G00198670
rosa_rugosa	Rorug06G0048700 Rorug06G0048800
rosa_samantha	Rh6AG168700 Rh6BG174000 Rh6CG168300 Rh6DG160300
rosa_wichuraiana	Rw6G014520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	829
Acc36I	ACCTGC	1 cut(s)	829
AccB7I	CCANNNNNTGG	1 cut(s)	900
AciI	CCGC	2 cut(s)	290, 1125
AclWI	GGATC	1 cut(s)	189
AcsI	RAATTY	1 cut(s)	161
AcuI	CTGAAG	2 cut(s)	642, 1210
AdeI	CACNNNGTG	1 cut(s)	442
AfiI	CCNNNNNNNGG	9 cut(s)	115, 341, 342, 475, 476, 838, 900, 1139, 1302
AgsI	TTSAA	6 cut(s)	298, 722, 775, 932, 1162, 1343
AjnI	CCWGG	1 cut(s)	382
AjuI	GAANNNNNNNTTGG	2 cut(s)	258, 290
AloI	GAACNNNNNNTCC	2 cut(s)	1323, 1355
AluBI	AGCT	9 cut(s)	7, 11, 19, 229, 745, 937, 1020, 1028, 1290
AluI	AGCT	9 cut(s)	7, 11, 19, 229, 745, 937, 1020, 1028, 1290
Alw26I	GTCTC	1 cut(s)	658
AlwI	GGATC	1 cut(s)	189
Ama87I	CYCGRG	1 cut(s)	870
AoxI	GGCC	1 cut(s)	460
ApeKI	GCWGC	2 cut(s)	419, 826
ApoI	RAATTY	1 cut(s)	161
Asp700I	GAANNNNTTC	2 cut(s)	501, 1169
AspLEI	GCGC	1 cut(s)	831
AspS9I	GGNCC	4 cut(s)	332, 386, 460, 1293
AsuHPI	GGTGA	7 cut(s)	136, 454, 477, 506, 560, 686, 853
AsuNHI	GCTAGC	1 cut(s)	7
AvaI	CYCGRG	1 cut(s)	870
AvaII	GGWCC	3 cut(s)	332, 386, 1293
AxyI	CCTNAGG	1 cut(s)	1280
BaeGI	GKGCMC	1 cut(s)	156
BanII	GRGCYC	1 cut(s)	361
BbvI	GCAGC	2 cut(s)	406, 838
BccI	CCATC	4 cut(s)	143, 347, 745, 1100
BceAI	ACGGC	3 cut(s)	49, 172, 447
BciT130I	CCWGG	1 cut(s)	384
BclI	TGATCA	1 cut(s)	691
BcoDI	GTCTC	1 cut(s)	658
BfaI	CTAG	4 cut(s)	8, 519, 788, 1013
BfmI	CTRYAG	4 cut(s)	69, 261, 302, 824
BfoI	RGCGCY	1 cut(s)	832
BfuAI	ACCTGC	1 cut(s)	829
BisI	GCNGC	2 cut(s)	420, 827
BlpI	GCTNAGC	1 cut(s)	1029
BlsI	GCNGC	2 cut(s)	421, 828
Bme1390I	CCNGG	1 cut(s)	384
Bme18I	GGWCC	3 cut(s)	332, 386, 1293
BmeT110I	CYCGRG	1 cut(s)	870
BmgT120I	GGNCC	4 cut(s)	332, 386, 460, 1293
BmiI	GGNNCC	4 cut(s)	78, 107, 334, 1295
BmrFI	CCNGG	1 cut(s)	384
BmsI	GCATC	1 cut(s)	823
BmtI	GCTAGC	1 cut(s)	11
BplI	GAGNNNNNCTC	2 cut(s)	518, 550
BpmI	CTGGAG	1 cut(s)	1122
Bpu1102I	GCTNAGC	1 cut(s)	1029
BpuEI	CTTGAG	2 cut(s)	614, 767
BsaJI	CCNNGG	4 cut(s)	382, 869, 1133, 1327
Bsc4I	CCNNNNNNNGG	9 cut(s)	115, 341, 342, 475, 476, 838, 900, 1139, 1302
Bse1I	ACTGG	5 cut(s)	396, 488, 909, 946, 1105
Bse21I	CCTNAGG	1 cut(s)	1280
BseBI	CCWGG	1 cut(s)	384
BseDI	CCNNGG	4 cut(s)	382, 869, 1133, 1327
BseLI	CCNNNNNNNGG	9 cut(s)	115, 341, 342, 475, 476, 838, 900, 1139, 1302
BseMII	CTCAG	4 cut(s)	522, 1020, 1271, 1330
BseNI	ACTGG	5 cut(s)	396, 488, 909, 946, 1105
BseRI	GAGGAG	3 cut(s)	69, 967, 1297
BseSI	GKGCMC	1 cut(s)	156
BseXI	GCAGC	2 cut(s)	406, 838
BshFI	GGCC	1 cut(s)	462
BsiHKCI	CYCGRG	1 cut(s)	870
BslFI	GGGAC	3 cut(s)	452, 516, 1279
BslI	CCNNNNNNNGG	9 cut(s)	115, 341, 342, 475, 476, 838, 900, 1139, 1302
BsmAI	GTCTC	1 cut(s)	658
BsmFI	GGGAC	3 cut(s)	452, 516, 1279
BsnI	GGCC	1 cut(s)	462
BsoBI	CYCGRG	1 cut(s)	870
Bsp1286I	GDGCHC	2 cut(s)	156, 361
Bsp143I	GATC	2 cut(s)	181, 691
Bsp1720I	GCTNAGC	1 cut(s)	1029
Bsp19I	CCATGG	2 cut(s)	1133, 1327
BspACI	CCGC	2 cut(s)	290, 1125
BspANI	GGCC	1 cut(s)	462
BspCNI	CTCAG	4 cut(s)	521, 1021, 1272, 1329
BspLI	GGNNCC	4 cut(s)	78, 107, 334, 1295
BspMAI	CTGCAG	3 cut(s)	73, 265, 828
BspMI	ACCTGC	1 cut(s)	829
BspOI	GCTAGC	1 cut(s)	11
BspPI	GGATC	1 cut(s)	189
BspQI	GCTCTTC	1 cut(s)	927
BsrI	ACTGG	5 cut(s)	396, 488, 909, 946, 1105
BssECI	CCNNGG	4 cut(s)	382, 869, 1133, 1327
BssMI	GATC	2 cut(s)	181, 691
BssT1I	CCWWGG	2 cut(s)	1133, 1327
Bst2UI	CCWGG	1 cut(s)	384
Bst4CI	ACNGT	2 cut(s)	451, 948
Bst6I	CTCTTC	5 cut(s)	33, 507, 618, 927, 1267
BstC8I	GCNNGC	4 cut(s)	9, 290, 1022, 1026
BstDEI	CTNAG	4 cut(s)	508, 1029, 1280, 1316
BstDSI	CCRYGG	2 cut(s)	1133, 1327
BstENI	CCTNNNNNAGG	1 cut(s)	836
BstH2I	RGCGCY	1 cut(s)	832
BstHHI	GCGC	1 cut(s)	831
BstKTI	GATC	2 cut(s)	184, 694
BstMAI	GTCTC	1 cut(s)	658
BstMBI	GATC	2 cut(s)	181, 691
BstMWI	GCNNNNNNNGC	3 cut(s)	835, 1004, 1030
BstNI	CCWGG	1 cut(s)	384
BstNSI	RCATGY	3 cut(s)	350, 590, 689
BstSCI	CCNGG	1 cut(s)	382
BstSFI	CTRYAG	4 cut(s)	69, 261, 302, 824
BstSLI	GKGCMC	1 cut(s)	156
BstV1I	GCAGC	2 cut(s)	406, 838
BstX2I	RGATCY	1 cut(s)	181
BstXI	CCANNNNNNTGG	2 cut(s)	664, 1334
BstYI	RGATCY	1 cut(s)	181
Bsu36I	CCTNAGG	1 cut(s)	1280
BsuRI	GGCC	1 cut(s)	462
BtgI	CCRYGG	2 cut(s)	1133, 1327
BtsI	GCAGTG	1 cut(s)	1214
BtsIMutI	CAGTG	4 cut(s)	403, 495, 916, 1214
BveI	ACCTGC	1 cut(s)	829
Cac8I	GCNNGC	4 cut(s)	9, 290, 1022, 1026
CfoI	GCGC	1 cut(s)	831
Cfr13I	GGNCC	4 cut(s)	332, 386, 460, 1293
CviAII	CATG	9 cut(s)	121, 221, 347, 587, 686, 851, 1114, 1134, 1328
DdeI	CTNAG	4 cut(s)	508, 1029, 1280, 1316
DpnI	GATC	2 cut(s)	183, 693
DpnII	GATC	2 cut(s)	181, 691
DraIII	CACNNNGTG	1 cut(s)	442
Eam1104I	CTCTTC	5 cut(s)	33, 507, 618, 927, 1267
EarI	CTCTTC	5 cut(s)	33, 507, 618, 927, 1267
EciI	GGCGGA	1 cut(s)	1140
Eco130I	CCWWGG	2 cut(s)	1133, 1327
Eco24I	GRGCYC	1 cut(s)	361
Eco47I	GGWCC	3 cut(s)	332, 386, 1293
Eco57I	CTGAAG	2 cut(s)	642, 1210
Eco81I	CCTNAGG	1 cut(s)	1280
Eco88I	CYCGRG	1 cut(s)	870
EcoNI	CCTNNNNNAGG	1 cut(s)	836
EcoO109I	RGGNCCY	1 cut(s)	386
EcoRII	CCWGG	1 cut(s)	382
EcoT14I	CCWWGG	2 cut(s)	1133, 1327
EcoT22I	ATGCAT	1 cut(s)	816
EcoT38I	GRGCYC	1 cut(s)	361
ErhI	CCWWGG	2 cut(s)	1133, 1327
FaeI	CATG	9 cut(s)	124, 224, 350, 590, 689, 854, 1117, 1137, 1331
FaqI	GGGAC	3 cut(s)	452, 516, 1279
FatI	CATG	9 cut(s)	120, 220, 346, 586, 685, 850, 1113, 1133, 1327
FauI	CCCGC	1 cut(s)	297
FbaI	TGATCA	1 cut(s)	691
Fnu4HI	GCNGC	2 cut(s)	420, 827
FriOI	GRGCYC	1 cut(s)	361
Fsp4HI	GCNGC	2 cut(s)	420, 827
FspBI	CTAG	4 cut(s)	8, 519, 788, 1013
GlaI	GCGC	1 cut(s)	830
GluI	GCNGC	2 cut(s)	420, 827
GsuI	CTGGAG	1 cut(s)	1122
HaeII	RGCGCY	1 cut(s)	832
HaeIII	GGCC	1 cut(s)	462
HhaI	GCGC	1 cut(s)	831
Hin1II	CATG	9 cut(s)	124, 224, 350, 590, 689, 854, 1117, 1137, 1331
Hin6I	GCGC	1 cut(s)	829
HinP1I	GCGC	1 cut(s)	829
HincII	GTYRAC	2 cut(s)	376, 922
HindII	GTYRAC	2 cut(s)	376, 922
HinfI	GANTC	7 cut(s)	372, 497, 514, 529, 613, 734, 1275
HpaI	GTTAAC	1 cut(s)	922
HphI	GGTGA	7 cut(s)	136, 454, 477, 506, 560, 686, 853
Hpy166II	GTNNAC	2 cut(s)	376, 922
Hpy188I	TCNGA	5 cut(s)	105, 246, 371, 511, 622
Hpy188III	TCNNGA	5 cut(s)	593, 929, 1013, 1279, 1343
Hpy8I	GTNNAC	2 cut(s)	376, 922
HpyAV	CCTTC	4 cut(s)	550, 1091, 1344, 1370
HpyCH4III	ACNGT	2 cut(s)	451, 948
HpyCH4V	TGCA	7 cut(s)	71, 263, 422, 814, 826, 838, 1194
HpyF10VI	GCNNNNNNNGC	3 cut(s)	835, 1004, 1030
HpyF3I	CTNAG	4 cut(s)	508, 1029, 1280, 1316
Hsp92II	CATG	9 cut(s)	124, 224, 350, 590, 689, 854, 1117, 1137, 1331
HspAI	GCGC	1 cut(s)	829
Ksp22I	TGATCA	1 cut(s)	691
KspAI	GTTAAC	1 cut(s)	922
Kzo9I	GATC	2 cut(s)	181, 691
LguI	GCTCTTC	1 cut(s)	927
LmnI	GCTCC	4 cut(s)	4, 82, 583, 856
Lsp1109I	GCAGC	2 cut(s)	406, 838
LweI	GCATC	1 cut(s)	823
MaeI	CTAG	4 cut(s)	8, 519, 788, 1013
MaeIII	GTNAC	4 cut(s)	709, 991, 1185, 1255
MalI	GATC	2 cut(s)	183, 693
MboI	GATC	2 cut(s)	181, 691
MflI	RGATCY	1 cut(s)	181
MhlI	GDGCHC	2 cut(s)	156, 361
MluCI	AATT	5 cut(s)	161, 414, 426, 728, 1332
MlyI	GAGTC	3 cut(s)	381, 538, 1284
Mph1103I	ATGCAT	1 cut(s)	816
MroXI	GAANNNNTTC	2 cut(s)	501, 1169
MseI	TTAA	1 cut(s)	921
MslI	CAYNNNNRTG	4 cut(s)	27, 351, 1118, 1199
MspA1I	CMGCKG	1 cut(s)	1020
MspR9I	CCNGG	1 cut(s)	384
MvaI	CCWGG	1 cut(s)	384
MwoI	GCNNNNNNNGC	3 cut(s)	835, 1004, 1030
NcoI	CCATGG	2 cut(s)	1133, 1327
NdeII	GATC	2 cut(s)	181, 691
NheI	GCTAGC	1 cut(s)	7
NlaIII	CATG	9 cut(s)	124, 224, 350, 590, 689, 854, 1117, 1137, 1331
NlaIV	GGNNCC	4 cut(s)	78, 107, 334, 1295
NmuCI	GTSAC	2 cut(s)	709, 991
NsiI	ATGCAT	1 cut(s)	816
NspI	RCATGY	3 cut(s)	350, 590, 689
PaqCI	CACCTGC	1 cut(s)	829
PciSI	GCTCTTC	1 cut(s)	927
PdmI	GAANNNNTTC	2 cut(s)	501, 1169
PfeI	GAWTC	4 cut(s)	497, 514, 613, 734
PflMI	CCANNNNNTGG	1 cut(s)	900
PkrI	GCNGC	2 cut(s)	421, 828
PleI	GAGTC	3 cut(s)	380, 537, 1283
PpsI	GAGTC	3 cut(s)	380, 537, 1283
PpuMI	RGGWCCY	1 cut(s)	386
Psp5II	RGGWCCY	1 cut(s)	386
Psp6I	CCWGG	1 cut(s)	382
PspGI	CCWGG	1 cut(s)	382
PspN4I	GGNNCC	4 cut(s)	78, 107, 334, 1295
PspPI	GGNCC	4 cut(s)	332, 386, 460, 1293
PspPPI	RGGWCCY	1 cut(s)	386
PstI	CTGCAG	3 cut(s)	73, 265, 828
PsuI	RGATCY	1 cut(s)	181
PvuII	CAGCTG	1 cut(s)	1020
RseI	CAYNNNNRTG	4 cut(s)	27, 351, 1118, 1199
SapI	GCTCTTC	1 cut(s)	927
SaqAI	TTAA	1 cut(s)	921
SatI	GCNGC	2 cut(s)	420, 827
Sau3AI	GATC	2 cut(s)	181, 691
Sau96I	GGNCC	4 cut(s)	332, 386, 460, 1293
SchI	GAGTC	3 cut(s)	381, 538, 1284
ScrFI	CCNGG	1 cut(s)	384
SduI	GDGCHC	2 cut(s)	156, 361
SfaNI	GCATC	1 cut(s)	823
SfcI	CTRYAG	4 cut(s)	69, 261, 302, 824
SinI	GGWCC	3 cut(s)	332, 386, 1293
SmiMI	CAYNNNNRTG	4 cut(s)	27, 351, 1118, 1199
SmlI	CTYRAG	2 cut(s)	593, 746
SmoI	CTYRAG	2 cut(s)	593, 746
Sse9I	AATT	5 cut(s)	161, 414, 426, 728, 1332
SsiI	CCGC	2 cut(s)	290, 1125
SspMI	CTAG	4 cut(s)	8, 519, 788, 1013
StyD4I	CCNGG	1 cut(s)	382
StyI	CCWWGG	2 cut(s)	1133, 1327
TaaI	ACNGT	2 cut(s)	451, 948
TaqI	TCGA	1 cut(s)	351
TasI	AATT	5 cut(s)	161, 414, 426, 728, 1332
TfiI	GAWTC	4 cut(s)	497, 514, 613, 734
Tru1I	TTAA	1 cut(s)	921
Tru9I	TTAA	1 cut(s)	921
TscAI	CASTG	4 cut(s)	403, 495, 916, 1221
TseFI	GTSAC	2 cut(s)	709, 991
TseI	GCWGC	2 cut(s)	419, 826
Tsp45I	GTSAC	2 cut(s)	709, 991
TspDTI	ATGAA	3 cut(s)	626, 659, 1130
TspGWI	ACGGA	3 cut(s)	345, 727, 1163
TspRI	CASTG	4 cut(s)	403, 495, 916, 1221
Van91I	CCANNNNNTGG	1 cut(s)	900
VpaK11BI	GGWCC	3 cut(s)	332, 386, 1293
XagI	CCTNNNNNAGG	1 cut(s)	836
XapI	RAATTY	1 cut(s)	161
XbaI	TCTAGA	1 cut(s)	1012
XceI	RCATGY	3 cut(s)	350, 590, 689
XmnI	GAANNNNTTC	2 cut(s)	501, 1169
XspI	CTAG	4 cut(s)	8, 519, 788, 1013
Zsp2I	ATGCAT	1 cut(s)	816

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.