RLG00000013846

CorA-like Mg2+ transporter protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0007265
Physical Location & Seq
Forward (+)
42776024 .. 42779623
3600 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013846

Sequence Viewer

Length: 1365 bp
ATGGAGCTAGCTGATGAGCTACAGATCAATGGAGAGGAAGAGGGAGAGGAAATGGACAGAGAACCGTCTGCTCCTCGCAGAGAGCCTCATCTCTACCGGAACCACTTTGGAGGCATGGTGAGGAAGAAAGCCTATATTTTTGATGGGCATGGCGAATTTTACAATAAGGAATGGGATCTTACAGAGGGTAGAGGAAATGAGTTTTGTTGGTATCATGTAGAGCTTCCAAAAGGAAATCAGAAACTATCTCAATCTGCAGAACACCTCATTGGTGTTCTTTGCCCGCCTTTGAAACTACAGGACATTCTCTCGCTTGTCAGCAATGGACCCTTTTGTGGGCATGTCGATGGGGCTCTTGTATTCAGAGTCAACTCCCCAGGTCCTCCTGCCAGTGATTTCACATTTAGAATTGCTGCAAGAATTACTGAACACTCGGTGATTACTGTGTCTTTGGGCCGTGTCCCCAGATTGGGTTTCTCGCCAGTGGGCGAATCTCTTCTTTCAGAGATTCCTAGAGTGGAGAGTCCCTCTAATGTTAGAGGTGAGCAGAAGGAAAGGAGTGGGATTGTGATAAGGGAGCATGTTCTTGAGTTCTTATTGACGATGAATCATTCTGAAGAGGCTGATAATCCTGTGCCAAAATCTGTCTCCAATCTTGTGGTTCATATTATTGACACACATGTTGATCACCTCCAAGATGTTGTGACTAAGCTTGAAATAGAATTGGATTCCGTTGAGCTTGAGATGGATAAAGGTGGCTTTGCTTTGAAGAAACAAATGCTAGATGATAGAAGATTTCCTAAAATGCATCTAAATCTGCAGCGCCTCTTGCAGGTGATTGCTCATGGGGAGCAAGTTTTTCCTCGGGTCAAAGAAAAATGTTCTTCCAAACAATGGTTTTCCAGTGAAGATGTTAACTCTCTTGAAGAGCTGACTGGACGGTTGAGGAGGCTAAAGGATAATGTAGGGTTTATAGCAAATCGTGTCACAGCAATACAGGCTGGTCTAGACAGCTGGCAAGCTGAGCAAATAAACAGGAAACTATATTATCTCTCTTTCCTTTCTATCGTATTCCTTCCTCTATCCATCATTACTGGAGTGTTTGGCATGAATGTGGGCGGAGTTCCATGGACAGGACAAAACGACCCAACATTGAAGAATGGTTTCCGTAATGTGATGTTACTTTGCATTGTTATGCTATTTGTGGCACTGCTCTGCTTCAGTTTTCCTGCTCTTTATACCCGTATAGTTACTTGGCAAAGGAGAAGAGTCCTGAGGAGAAGCTGGTCCCTCAACAGGAAGTCATTTCTCAGTAGAACCCATGGAATTGGAGTTCAAGAAAGAAGGGGCTACCTTCGGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CorA

Protein Analysis

455

Amino Acids

51.74

Weight (kDa)

7.72

Isoelectric Point (pI)

46.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CorA PF01544 209 - 407 1.6e-27 CorA-like Mg2+ transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 823
Acc36I ACCTGC 1 cut(s) 823
AccB7I CCANNNNNTGG 1 cut(s) 894
AciI CCGC 2 cut(s) 284, 1119
AclWI GGATC 1 cut(s) 183
AcsI RAATTY 1 cut(s) 155
AcuI CTGAAG 2 cut(s) 636, 1204
AdeI CACNNNGTG 1 cut(s) 436
AfiI CCNNNNNNNGG 8 cut(s) 335, 336, 469, 470, 832, 894, 1133, 1296
AflIII ACRYGT 1 cut(s) 679
AgsI TTSAA 6 cut(s) 292, 716, 769, 926, 1156, 1337
AjnI CCWGG 1 cut(s) 376
AjuI GAANNNNNNNTTGG 2 cut(s) 252, 284
AloI GAACNNNNNNTCC 2 cut(s) 1317, 1349
Alw26I GTCTC 1 cut(s) 652
AlwI GGATC 1 cut(s) 183
Ama87I CYCGRG 1 cut(s) 864
AoxI GGCC 1 cut(s) 454
ApeKI GCWGC 2 cut(s) 413, 820
ApoI RAATTY 1 cut(s) 155
Asp700I GAANNNNTTC 2 cut(s) 495, 1163
AspLEI GCGC 1 cut(s) 825
AspS9I GGNCC 4 cut(s) 326, 380, 454, 1287
AsuHPI GGTGA 5 cut(s) 130, 448, 554, 680, 847
AsuNHI GCTAGC 1 cut(s) 7
AvaI CYCGRG 1 cut(s) 864
AvaII GGWCC 3 cut(s) 326, 380, 1287
AxyI CCTNAGG 1 cut(s) 1274
BanII GRGCYC 1 cut(s) 355
BbvI GCAGC 2 cut(s) 400, 832
BccI CCATC 4 cut(s) 137, 341, 739, 1094
BceAI ACGGC 1 cut(s) 441
BciT130I CCWGG 1 cut(s) 378
BclI TGATCA 1 cut(s) 685
BcoDI GTCTC 1 cut(s) 652
BfaI CTAG 4 cut(s) 8, 513, 782, 1007
BfmI CTRYAG 4 cut(s) 20, 255, 296, 818
BfoI RGCGCY 1 cut(s) 826
BfuAI ACCTGC 1 cut(s) 823
BisI GCNGC 2 cut(s) 414, 821
BlpI GCTNAGC 1 cut(s) 1023
BlsI GCNGC 2 cut(s) 415, 822
Bme1390I CCNGG 1 cut(s) 378
Bme18I GGWCC 3 cut(s) 326, 380, 1287
BmeT110I CYCGRG 1 cut(s) 864
BmgT120I GGNCC 4 cut(s) 326, 380, 454, 1287
BmiI GGNNCC 3 cut(s) 101, 328, 1289
BmrFI CCNGG 1 cut(s) 378
BmsI GCATC 1 cut(s) 817
BmtI GCTAGC 1 cut(s) 11
BplI GAGNNNNNCTC 2 cut(s) 512, 544
BpmI CTGGAG 1 cut(s) 1116
Bpu1102I GCTNAGC 1 cut(s) 1023
BpuEI CTTGAG 2 cut(s) 608, 761
BsaJI CCNNGG 4 cut(s) 376, 863, 1127, 1321
BsaWI WCCGGW 1 cut(s) 96
BsaXI ACNNNNNCTCC 2 cut(s) 102, 132
Bsc4I CCNNNNNNNGG 8 cut(s) 335, 336, 469, 470, 832, 894, 1133, 1296
Bse1I ACTGG 5 cut(s) 390, 482, 903, 940, 1099
Bse21I CCTNAGG 1 cut(s) 1274
Bse3DI GCAATG 1 cut(s) 328
BseBI CCWGG 1 cut(s) 378
BseDI CCNNGG 4 cut(s) 376, 863, 1127, 1321
BseLI CCNNNNNNNGG 8 cut(s) 335, 336, 469, 470, 832, 894, 1133, 1296
BseMI GCAATG 1 cut(s) 328
BseMII CTCAG 3 cut(s) 1014, 1265, 1324
BseNI ACTGG 5 cut(s) 390, 482, 903, 940, 1099
BseRI GAGGAG 3 cut(s) 63, 961, 1291
BseXI GCAGC 2 cut(s) 400, 832
BshFI GGCC 1 cut(s) 456
BsiHKCI CYCGRG 1 cut(s) 864
BsiSI CCGG 1 cut(s) 97
BslFI GGGAC 3 cut(s) 446, 510, 1273
BslI CCNNNNNNNGG 8 cut(s) 335, 336, 469, 470, 832, 894, 1133, 1296
BsmAI GTCTC 1 cut(s) 652
BsmFI GGGAC 3 cut(s) 446, 510, 1273
BsnI GGCC 1 cut(s) 456
BsoBI CYCGRG 1 cut(s) 864
Bsp1286I GDGCHC 1 cut(s) 355
Bsp143I GATC 3 cut(s) 24, 175, 685
Bsp1720I GCTNAGC 1 cut(s) 1023
Bsp19I CCATGG 2 cut(s) 1127, 1321
BspACI CCGC 2 cut(s) 284, 1119
BspANI GGCC 1 cut(s) 456
BspCNI CTCAG 3 cut(s) 1015, 1266, 1323
BspLI GGNNCC 3 cut(s) 101, 328, 1289
BspMAI CTGCAG 2 cut(s) 259, 822
BspMI ACCTGC 1 cut(s) 823
BspOI GCTAGC 1 cut(s) 11
BspPI GGATC 1 cut(s) 183
BspQI GCTCTTC 1 cut(s) 921
BsrDI GCAATG 1 cut(s) 328
BsrI ACTGG 5 cut(s) 390, 482, 903, 940, 1099
BssECI CCNNGG 4 cut(s) 376, 863, 1127, 1321
BssMI GATC 3 cut(s) 24, 175, 685
BssT1I CCWWGG 2 cut(s) 1127, 1321
Bst2UI CCWGG 1 cut(s) 378
Bst4CI ACNGT 3 cut(s) 66, 445, 942
Bst6I CTCTTC 5 cut(s) 33, 501, 612, 921, 1261
BstC8I GCNNGC 4 cut(s) 9, 284, 1016, 1020
BstDEI CTNAG 4 cut(s) 708, 1023, 1274, 1310
BstDSI CCRYGG 2 cut(s) 1127, 1321
BstENI CCTNNNNNAGG 1 cut(s) 830
BstH2I RGCGCY 1 cut(s) 826
BstHHI GCGC 1 cut(s) 825
BstKTI GATC 3 cut(s) 27, 178, 688
BstMAI GTCTC 1 cut(s) 652
BstMBI GATC 3 cut(s) 24, 175, 685
BstMWI GCNNNNNNNGC 3 cut(s) 829, 998, 1024
BstNI CCWGG 1 cut(s) 378
BstNSI RCATGY 3 cut(s) 344, 584, 683
BstSCI CCNGG 1 cut(s) 376
BstSFI CTRYAG 4 cut(s) 20, 255, 296, 818
BstV1I GCAGC 2 cut(s) 400, 832
BstX2I RGATCY 1 cut(s) 175
BstXI CCANNNNNNTGG 2 cut(s) 658, 1328
BstYI RGATCY 1 cut(s) 175
Bsu36I CCTNAGG 1 cut(s) 1274
BsuRI GGCC 1 cut(s) 456
BtgI CCRYGG 2 cut(s) 1127, 1321
BtsI GCAGTG 1 cut(s) 1208
BtsIMutI CAGTG 4 cut(s) 397, 489, 910, 1208
BveI ACCTGC 1 cut(s) 823
Cac8I GCNNGC 4 cut(s) 9, 284, 1016, 1020
CfoI GCGC 1 cut(s) 825
Cfr13I GGNCC 4 cut(s) 326, 380, 454, 1287
DdeI CTNAG 4 cut(s) 708, 1023, 1274, 1310
DpnI GATC 3 cut(s) 26, 177, 687
DpnII GATC 3 cut(s) 24, 175, 685
DraIII CACNNNGTG 1 cut(s) 436
Eam1104I CTCTTC 5 cut(s) 33, 501, 612, 921, 1261
EarI CTCTTC 5 cut(s) 33, 501, 612, 921, 1261
EciI GGCGGA 1 cut(s) 1134
Eco130I CCWWGG 2 cut(s) 1127, 1321
Eco24I GRGCYC 1 cut(s) 355
Eco47I GGWCC 3 cut(s) 326, 380, 1287
Eco57I CTGAAG 2 cut(s) 636, 1204
Eco81I CCTNAGG 1 cut(s) 1274
Eco88I CYCGRG 1 cut(s) 864
EcoNI CCTNNNNNAGG 1 cut(s) 830
EcoO109I RGGNCCY 1 cut(s) 380
EcoRII CCWGG 1 cut(s) 376
EcoT14I CCWWGG 2 cut(s) 1127, 1321
EcoT22I ATGCAT 1 cut(s) 810
EcoT38I GRGCYC 1 cut(s) 355
ErhI CCWWGG 2 cut(s) 1127, 1321
FaqI GGGAC 3 cut(s) 446, 510, 1273
FauI CCCGC 1 cut(s) 291
FbaI TGATCA 1 cut(s) 685
Fnu4HI GCNGC 2 cut(s) 414, 821
FriOI GRGCYC 1 cut(s) 355
Fsp4HI GCNGC 2 cut(s) 414, 821
FspBI CTAG 4 cut(s) 8, 513, 782, 1007
GlaI GCGC 1 cut(s) 824
GluI GCNGC 2 cut(s) 414, 821
GsuI CTGGAG 1 cut(s) 1116
HaeII RGCGCY 1 cut(s) 826
HaeIII GGCC 1 cut(s) 456
HapII CCGG 1 cut(s) 97
HhaI GCGC 1 cut(s) 825
Hin6I GCGC 1 cut(s) 823
HinP1I GCGC 1 cut(s) 823
HincII GTYRAC 2 cut(s) 370, 916
HindII GTYRAC 2 cut(s) 370, 916
HindIII AAGCTT 1 cut(s) 710
HinfI GANTC 7 cut(s) 366, 491, 508, 523, 607, 728, 1269
HpaI GTTAAC 1 cut(s) 916
HpaII CCGG 1 cut(s) 97
HphI GGTGA 5 cut(s) 130, 448, 554, 680, 847
Hpy166II GTNNAC 2 cut(s) 370, 916
Hpy188I TCNGA 4 cut(s) 240, 365, 505, 616
Hpy188III TCNNGA 5 cut(s) 587, 923, 1007, 1273, 1337
Hpy8I GTNNAC 2 cut(s) 370, 916
HpyAV CCTTC 4 cut(s) 544, 1085, 1338, 1364
HpyCH4III ACNGT 3 cut(s) 66, 445, 942
HpyCH4V TGCA 6 cut(s) 257, 416, 808, 820, 832, 1188
HpyF10VI GCNNNNNNNGC 3 cut(s) 829, 998, 1024
HpyF3I CTNAG 4 cut(s) 708, 1023, 1274, 1310
HspAI GCGC 1 cut(s) 823
Ksp22I TGATCA 1 cut(s) 685
KspAI GTTAAC 1 cut(s) 916
Kzo9I GATC 3 cut(s) 24, 175, 685
LguI GCTCTTC 1 cut(s) 921
LmnI GCTCC 4 cut(s) 4, 76, 577, 850
Lsp1109I GCAGC 2 cut(s) 400, 832
LweI GCATC 1 cut(s) 817
MaeI CTAG 4 cut(s) 8, 513, 782, 1007
MaeIII GTNAC 4 cut(s) 703, 985, 1179, 1249
MalI GATC 3 cut(s) 26, 177, 687
MboI GATC 3 cut(s) 24, 175, 685
MflI RGATCY 1 cut(s) 175
MhlI GDGCHC 1 cut(s) 355
MluCI AATT 5 cut(s) 155, 408, 420, 722, 1326
MlyI GAGTC 3 cut(s) 375, 532, 1278
Mph1103I ATGCAT 1 cut(s) 810
MroXI GAANNNNTTC 2 cut(s) 495, 1163
MseI TTAA 1 cut(s) 915
MslI CAYNNNNRTG 3 cut(s) 345, 1112, 1193
MspA1I CMGCKG 1 cut(s) 1014
MspI CCGG 1 cut(s) 97
MspR9I CCNGG 1 cut(s) 378
MvaI CCWGG 1 cut(s) 378
MwoI GCNNNNNNNGC 3 cut(s) 829, 998, 1024
NcoI CCATGG 2 cut(s) 1127, 1321
NdeII GATC 3 cut(s) 24, 175, 685
NheI GCTAGC 1 cut(s) 7
NlaIV GGNNCC 3 cut(s) 101, 328, 1289
NmuCI GTSAC 2 cut(s) 703, 985
NsiI ATGCAT 1 cut(s) 810
NspI RCATGY 3 cut(s) 344, 584, 683
PaqCI CACCTGC 1 cut(s) 823
PciI ACATGT 1 cut(s) 679
PciSI GCTCTTC 1 cut(s) 921
PdmI GAANNNNTTC 2 cut(s) 495, 1163
PfeI GAWTC 4 cut(s) 491, 508, 607, 728
PflMI CCANNNNNTGG 1 cut(s) 894
PkrI GCNGC 2 cut(s) 415, 822
PleI GAGTC 3 cut(s) 374, 531, 1277
PpsI GAGTC 3 cut(s) 374, 531, 1277
PpuMI RGGWCCY 1 cut(s) 380
PscI ACATGT 1 cut(s) 679
Psp5II RGGWCCY 1 cut(s) 380
Psp6I CCWGG 1 cut(s) 376
PspGI CCWGG 1 cut(s) 376
PspN4I GGNNCC 3 cut(s) 101, 328, 1289
PspPI GGNCC 4 cut(s) 326, 380, 454, 1287
PspPPI RGGWCCY 1 cut(s) 380
PstI CTGCAG 2 cut(s) 259, 822
PsuI RGATCY 1 cut(s) 175
PvuII CAGCTG 1 cut(s) 1014
RseI CAYNNNNRTG 3 cut(s) 345, 1112, 1193
SapI GCTCTTC 1 cut(s) 921
SaqAI TTAA 1 cut(s) 915
SatI GCNGC 2 cut(s) 414, 821
Sau3AI GATC 3 cut(s) 24, 175, 685
Sau96I GGNCC 4 cut(s) 326, 380, 454, 1287
SchI GAGTC 3 cut(s) 375, 532, 1278
ScrFI CCNGG 1 cut(s) 378
SduI GDGCHC 1 cut(s) 355
SfaNI GCATC 1 cut(s) 817
SfcI CTRYAG 4 cut(s) 20, 255, 296, 818
SinI GGWCC 3 cut(s) 326, 380, 1287
SmiMI CAYNNNNRTG 3 cut(s) 345, 1112, 1193
SmlI CTYRAG 2 cut(s) 587, 740
SmoI CTYRAG 2 cut(s) 587, 740
Sse9I AATT 5 cut(s) 155, 408, 420, 722, 1326
SsiI CCGC 2 cut(s) 284, 1119
SspMI CTAG 4 cut(s) 8, 513, 782, 1007
StyD4I CCNGG 1 cut(s) 376
StyI CCWWGG 2 cut(s) 1127, 1321
TaaI ACNGT 3 cut(s) 66, 445, 942
TaqI TCGA 1 cut(s) 345
TasI AATT 5 cut(s) 155, 408, 420, 722, 1326
TfiI GAWTC 4 cut(s) 491, 508, 607, 728
Tru1I TTAA 1 cut(s) 915
Tru9I TTAA 1 cut(s) 915
TscAI CASTG 4 cut(s) 397, 489, 910, 1215
TseFI GTSAC 2 cut(s) 703, 985
TseI GCWGC 2 cut(s) 413, 820
Tsp45I GTSAC 2 cut(s) 703, 985
TspDTI ATGAA 3 cut(s) 620, 653, 1124
TspGWI ACGGA 2 cut(s) 721, 1157
TspRI CASTG 4 cut(s) 397, 489, 910, 1215
Van91I CCANNNNNTGG 1 cut(s) 894
VpaK11BI GGWCC 3 cut(s) 326, 380, 1287
XagI CCTNNNNNAGG 1 cut(s) 830
XapI RAATTY 1 cut(s) 155
XbaI TCTAGA 1 cut(s) 1006
XceI RCATGY 3 cut(s) 344, 584, 683
XmnI GAANNNNTTC 2 cut(s) 495, 1163
XspI CTAG 4 cut(s) 8, 513, 782, 1007
Zsp2I ATGCAT 1 cut(s) 810
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.