Rorug06G0048700

CorA-like Mg2+ transporter protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0007265
Physical Location & Seq
Forward (+)
6446261 .. 6447394
1134 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0048700.1

Sequence Viewer

Length: 486 bp
ATGGCTGCTGTGAGGTTGAACGCAAAGATTTTCACCGACGGCTACTTCTCCTTGTACCCCTGCAAGCTCGAAAAGGTCAACATCAAGTGCGGCGAGATCTCAAAATTTACAGATCTCAAACCCGGCAGCTGTTCCAGTTTCACTCTCCACCTTCTTCATTTTATACATCGAGTTTCAACAAGTTTTTCTGTACAAGCTTCCTTGCCGGAGAATAGCGATAGATTTAAAGTGGAATACACTCCATGGATGATTGTTGGATTGGGTAACCCTGGAAATAAGTACCATGGAACTAGGCACAATGTTGGTTTTGAAATGATAGATAGTATTTCCAAAATGCAGGGCATTGTGATGAATACAATTCAGTCAAAGGCACTGGTTGGAATAGGTTCCATTGGAGAGGAACCAATTTTGGTGGTGAAGCCTCAAGCTTACATGAATTATAGTGGGGAAGCGGTGTGTTCTCATCATCTTTGTTTGCTATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CorA

Protein Analysis

161

Amino Acids

17.82

Weight (kDa)

8.59

Isoelectric Point (pI)

27.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pept_tRNA_hydro PF01195 83 - 153 3.8e-23 Peptidyl-tRNA hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 90, 452
AcsI RAATTY 1 cut(s) 104
AfaI GTAC 3 cut(s) 56, 192, 281
AgsI TTSAA 3 cut(s) 19, 177, 311
AjnI CCWGG 1 cut(s) 268
AluBI AGCT 4 cut(s) 67, 129, 197, 428
AluI AGCT 4 cut(s) 67, 129, 197, 428
ApeKI GCWGC 2 cut(s) 5, 126
ApoI RAATTY 1 cut(s) 104
Asp700I GAANNNNTTC 1 cut(s) 385
AsuC2I CCSGG 1 cut(s) 123
AsuHPI GGTGA 2 cut(s) 25, 427
BbvI GCAGC 1 cut(s) 138
BceAI ACGGC 1 cut(s) 55
BciT130I CCWGG 1 cut(s) 270
BcnI CCSGG 1 cut(s) 123
BfaI CTAG 1 cut(s) 291
BglII AGATCT 2 cut(s) 96, 112
BisI GCNGC 3 cut(s) 6, 91, 127
BlsI GCNGC 3 cut(s) 7, 92, 128
Bme1390I CCNGG 2 cut(s) 123, 270
BmiI GGNNCC 2 cut(s) 388, 402
BmrFI CCNGG 2 cut(s) 123, 270
BpuEI CTTGAG 1 cut(s) 408
BpuMI CCSGG 1 cut(s) 123
BsaJI CCNNGG 3 cut(s) 242, 268, 283
Bse1I ACTGG 2 cut(s) 135, 378
BseBI CCWGG 1 cut(s) 270
BseDI CCNNGG 3 cut(s) 242, 268, 283
BseGI GGATG 1 cut(s) 252
BseNI ACTGG 2 cut(s) 135, 378
BseXI GCAGC 1 cut(s) 138
BsiSI CCGG 2 cut(s) 123, 206
Bsp1407I TGTACA 1 cut(s) 190
Bsp143I GATC 2 cut(s) 96, 112
Bsp19I CCATGG 2 cut(s) 242, 283
BspACI CCGC 2 cut(s) 90, 452
BspLI GGNNCC 2 cut(s) 388, 402
BsrGI TGTACA 1 cut(s) 190
BsrI ACTGG 2 cut(s) 135, 378
BssECI CCNNGG 3 cut(s) 242, 268, 283
BssMI GATC 2 cut(s) 96, 112
BssT1I CCWWGG 2 cut(s) 242, 283
Bst2UI CCWGG 1 cut(s) 270
BstAUI TGTACA 1 cut(s) 190
BstC8I GCNNGC 1 cut(s) 65
BstDSI CCRYGG 2 cut(s) 242, 283
BstEII GGTNACC 1 cut(s) 263
BstF5I GGATG 1 cut(s) 252
BstKTI GATC 2 cut(s) 99, 115
BstMBI GATC 2 cut(s) 96, 112
BstNI CCWGG 1 cut(s) 270
BstPI GGTNACC 1 cut(s) 263
BstSCI CCNGG 2 cut(s) 121, 268
BstV1I GCAGC 1 cut(s) 138
BstX2I RGATCY 2 cut(s) 96, 112
BstYI RGATCY 2 cut(s) 96, 112
BtgI CCRYGG 2 cut(s) 242, 283
BtsCI GGATG 1 cut(s) 252
BtsIMutI CAGTG 1 cut(s) 371
Cac8I GCNNGC 1 cut(s) 65
Csp6I GTAC 3 cut(s) 55, 191, 280
CspCI CAANNNNNGTGG 2 cut(s) 393, 428
CviAII CATG 3 cut(s) 243, 284, 433
CviJI RGCY 7 cut(s) 5, 42, 67, 129, 197, 421, 428
CviKI_1 RGCY 7 cut(s) 5, 42, 67, 129, 197, 421, 428
CviQI GTAC 3 cut(s) 55, 191, 280
DpnI GATC 2 cut(s) 98, 114
DpnII GATC 2 cut(s) 96, 112
DraI TTTAAA 1 cut(s) 226
Eco130I CCWWGG 2 cut(s) 242, 283
Eco91I GGTNACC 1 cut(s) 263
EcoO65I GGTNACC 1 cut(s) 263
EcoRII CCWGG 1 cut(s) 268
EcoT14I CCWWGG 2 cut(s) 242, 283
ErhI CCWWGG 2 cut(s) 242, 283
FaeI CATG 3 cut(s) 246, 287, 436
FaiI YATR 5 cut(s) 164, 244, 285, 434, 441
FatI CATG 3 cut(s) 242, 283, 432
Fnu4HI GCNGC 3 cut(s) 6, 91, 127
FokI GGATG 1 cut(s) 259
Fsp4HI GCNGC 3 cut(s) 6, 91, 127
FspBI CTAG 1 cut(s) 291
GluI GCNGC 3 cut(s) 6, 91, 127
HapII CCGG 2 cut(s) 123, 206
Hin1II CATG 3 cut(s) 246, 287, 436
HincII GTYRAC 1 cut(s) 79
HindII GTYRAC 1 cut(s) 79
HindIII AAGCTT 2 cut(s) 195, 426
HpaII CCGG 2 cut(s) 123, 206
HphI GGTGA 2 cut(s) 25, 427
Hpy166II GTNNAC 1 cut(s) 79
Hpy188III TCNNGA 1 cut(s) 483
Hpy8I GTNNAC 1 cut(s) 79
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 1 cut(s) 161
HpyCH4V TGCA 2 cut(s) 63, 337
Hsp92II CATG 3 cut(s) 246, 287, 436
Kzo9I GATC 2 cut(s) 96, 112
LpnPI CCDG 8 cut(s) 73, 136, 148, 219, 255, 282, 323, 359
Lsp1109I GCAGC 1 cut(s) 138
MaeI CTAG 1 cut(s) 291
MaeIII GTNAC 1 cut(s) 263
MalI GATC 2 cut(s) 98, 114
MboI GATC 2 cut(s) 96, 112
MboII GAAGA 1 cut(s) 146
MflI RGATCY 2 cut(s) 96, 112
MluCI AATT 4 cut(s) 104, 357, 405, 436
MmeI TCCRAC 2 cut(s) 235, 358
MnlI CCTC 3 cut(s) 6, 391, 432
MroXI GAANNNNTTC 1 cut(s) 385
MseI TTAA 1 cut(s) 225
MslI CAYNNNNRTG 1 cut(s) 347
MspA1I CMGCKG 1 cut(s) 129
MspI CCGG 2 cut(s) 123, 206
MspR9I CCNGG 2 cut(s) 123, 270
MvaI CCWGG 1 cut(s) 270
NciI CCSGG 1 cut(s) 123
NcoI CCATGG 2 cut(s) 242, 283
NdeII GATC 2 cut(s) 96, 112
NlaIII CATG 3 cut(s) 246, 287, 436
NlaIV GGNNCC 2 cut(s) 388, 402
PdmI GAANNNNTTC 1 cut(s) 385
PkrI GCNGC 3 cut(s) 7, 92, 128
Psp6I CCWGG 1 cut(s) 268
PspEI GGTNACC 1 cut(s) 263
PspGI CCWGG 1 cut(s) 268
PspN4I GGNNCC 2 cut(s) 388, 402
PsuI RGATCY 2 cut(s) 96, 112
PvuII CAGCTG 1 cut(s) 129
RsaI GTAC 3 cut(s) 56, 192, 281
RsaNI GTAC 3 cut(s) 55, 191, 280
RseI CAYNNNNRTG 1 cut(s) 347
SaqAI TTAA 1 cut(s) 225
SatI GCNGC 3 cut(s) 6, 91, 127
Sau3AI GATC 2 cut(s) 96, 112
ScrFI CCNGG 2 cut(s) 123, 270
SetI ASST 8 cut(s) 17, 69, 78, 131, 153, 199, 388, 430
SmiMI CAYNNNNRTG 1 cut(s) 347
SmlI CTYRAG 1 cut(s) 423
SmoI CTYRAG 1 cut(s) 423
Sse9I AATT 4 cut(s) 104, 357, 405, 436
SsiI CCGC 2 cut(s) 90, 452
SspMI CTAG 1 cut(s) 291
StyD4I CCNGG 2 cut(s) 121, 268
StyI CCWWGG 2 cut(s) 242, 283
TaqI TCGA 2 cut(s) 69, 169
TasI AATT 4 cut(s) 104, 357, 405, 436
TatI WGTACW 1 cut(s) 190
TauI GCSGC 1 cut(s) 93
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TscAI CASTG 1 cut(s) 378
TseI GCWGC 2 cut(s) 5, 126
TspDTI ATGAA 3 cut(s) 146, 365, 449
TspRI CASTG 1 cut(s) 378
XapI RAATTY 1 cut(s) 104
XmnI GAANNNNTTC 1 cut(s) 385
XspI CTAG 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.