Rw6G014520

CorA-like Mg2+ transporter protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0007265
Physical Location & Seq
Reverse (-)
26838029 .. 26842732
4704 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G014520.1

Sequence Viewer

Length: 1122 bp
ATGGAGCTAGCTGATGAGCTACATATCAATGGAGAGGAAGAGGGAGAGGAAATGGACAGAGAGCCGTCTGCAGAGGCTCCTCGCAGAGAGCCTCATCTCTATCGGAACCATTTTGGGGGCATGGTGAGGAAGAAAGCCTATATTTTTGATGGGCACGGCGAATTTTACAATAAGGAATGGGATCTTACAGAGGGTAGAGGAAATGAGTTTTGTTGGTATCATGTAGAGCTTCCAAAAGGAAATCAGAAACTATCTCAATCTGCAGAACACCTCATTGGTGTTCTTTGCCCGCCTTTGAAACTACAGGACATTCTCTCGCTTGTCAGCAACGGACCCTTTTGTGGGCATGTCGATGGGGCTCTTGTATTCAGAGTCAACTCCCCAGGTCCTCCTGCCAGTGATTTCACATTTAGAATTGCTGCAAGAATTACTGAACACTCGGTGATTACTGTGTCTTTGGGCCGTGTCCCCAGATTGGGTTTCTCACCAGTGGGTGAATCTCTTCTCTCAGAGATTCCTAGAGTGGAGAGTCCCTCTTATGTTAGAGGTGAGCAGAAGGAAAGGAGTGGGATTGTGATAAGGGAGCATGTTCTTGAGTTCTTATTGACGATGAATCATTCTGAAGAGGCTGATAATCCTGTGCCAAAATCTGTCTCCAATCTTGTGGTTCATATTATTGACACGCATGTTGATCACCTCCAAGATGTTGTGACTAAACTTGAAATAGAATTAGATTCCGTTGAGCTTGAGATGGATAAAGGTGGTTTTGCTTTGAAGAAACAAATGCTAGATGATAGAAGATTTCCTAAAATGCATCTAAATCTGCAGCGCCTCTTGCAGGTGATTGCTCATGGGGAGCAAGTTTTTCCTCGGGTCAAAGAAAAATGTTCTTCCAAACAATGGTTTTCCAGTGAAGATGTTAACTCTCTTGAAGAGCTGACTGGACGGTTGAGGAGGCTAAAGGATAATGTAGGGTTTATAGCAAATCGTGTCACAGCAATACAGGCTGGTCTAGACAGCTGGCAAGCTGAGCAAATAAACAGGAAACTATATTATCTCTCTTTCCTTTCTATCGTATTCCTTCCTCTATCCATCATTACTGGAGGTAAATTTGTTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CorA

Protein Analysis

373

Amino Acids

42.28

Weight (kDa)

5.79

Isoelectric Point (pI)

46.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CorA PF01544 211 - 368 1.8e-17 CorA-like Mg2+ transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 829
Acc36I ACCTGC 1 cut(s) 829
AccB7I CCANNNNNTGG 1 cut(s) 900
AciI CCGC 1 cut(s) 290
AclWI GGATC 1 cut(s) 189
AcsI RAATTY 2 cut(s) 161, 1109
AcuI CTGAAG 1 cut(s) 642
AdeI CACNNNGTG 1 cut(s) 442
AfiI CCNNNNNNNGG 7 cut(s) 115, 341, 342, 475, 476, 838, 900
AgsI TTSAA 4 cut(s) 298, 722, 775, 932
AjnI CCWGG 1 cut(s) 382
AjuI GAANNNNNNNTTGG 2 cut(s) 258, 290
AluBI AGCT 8 cut(s) 7, 11, 19, 229, 745, 937, 1020, 1028
AluI AGCT 8 cut(s) 7, 11, 19, 229, 745, 937, 1020, 1028
Alw26I GTCTC 1 cut(s) 658
AlwI GGATC 1 cut(s) 189
Ama87I CYCGRG 1 cut(s) 870
AoxI GGCC 1 cut(s) 460
ApeKI GCWGC 2 cut(s) 419, 826
ApoI RAATTY 2 cut(s) 161, 1109
Asp700I GAANNNNTTC 1 cut(s) 501
AspLEI GCGC 1 cut(s) 831
AspS9I GGNCC 3 cut(s) 332, 386, 460
AsuHPI GGTGA 7 cut(s) 136, 454, 477, 506, 560, 686, 853
AsuNHI GCTAGC 1 cut(s) 7
AvaI CYCGRG 1 cut(s) 870
AvaII GGWCC 2 cut(s) 332, 386
BaeGI GKGCMC 1 cut(s) 156
BanII GRGCYC 1 cut(s) 361
BbvI GCAGC 2 cut(s) 406, 838
BccI CCATC 4 cut(s) 143, 347, 745, 1100
BceAI ACGGC 3 cut(s) 49, 172, 447
BciT130I CCWGG 1 cut(s) 384
BclI TGATCA 1 cut(s) 691
BcoDI GTCTC 1 cut(s) 658
BfaI CTAG 4 cut(s) 8, 519, 788, 1013
BfmI CTRYAG 4 cut(s) 69, 261, 302, 824
BfoI RGCGCY 1 cut(s) 832
BfuAI ACCTGC 1 cut(s) 829
BisI GCNGC 2 cut(s) 420, 827
BlpI GCTNAGC 1 cut(s) 1029
BlsI GCNGC 2 cut(s) 421, 828
Bme1390I CCNGG 1 cut(s) 384
Bme18I GGWCC 2 cut(s) 332, 386
BmeT110I CYCGRG 1 cut(s) 870
BmgT120I GGNCC 3 cut(s) 332, 386, 460
BmiI GGNNCC 3 cut(s) 78, 107, 334
BmrFI CCNGG 1 cut(s) 384
BmsI GCATC 1 cut(s) 823
BmtI GCTAGC 1 cut(s) 11
BplI GAGNNNNNCTC 2 cut(s) 518, 550
BpmI CTGGAG 1 cut(s) 1122
Bpu1102I GCTNAGC 1 cut(s) 1029
BpuEI CTTGAG 2 cut(s) 614, 767
BsaJI CCNNGG 2 cut(s) 382, 869
Bsc4I CCNNNNNNNGG 7 cut(s) 115, 341, 342, 475, 476, 838, 900
Bse1I ACTGG 5 cut(s) 396, 488, 909, 946, 1105
BseBI CCWGG 1 cut(s) 384
BseDI CCNNGG 2 cut(s) 382, 869
BseLI CCNNNNNNNGG 7 cut(s) 115, 341, 342, 475, 476, 838, 900
BseMII CTCAG 2 cut(s) 522, 1020
BseNI ACTGG 5 cut(s) 396, 488, 909, 946, 1105
BseRI GAGGAG 2 cut(s) 69, 967
BseSI GKGCMC 1 cut(s) 156
BseXI GCAGC 2 cut(s) 406, 838
BshFI GGCC 1 cut(s) 462
BsiHKCI CYCGRG 1 cut(s) 870
BslFI GGGAC 2 cut(s) 452, 516
BslI CCNNNNNNNGG 7 cut(s) 115, 341, 342, 475, 476, 838, 900
BsmAI GTCTC 1 cut(s) 658
BsmFI GGGAC 2 cut(s) 452, 516
BsnI GGCC 1 cut(s) 462
BsoBI CYCGRG 1 cut(s) 870
Bsp1286I GDGCHC 2 cut(s) 156, 361
Bsp143I GATC 2 cut(s) 181, 691
Bsp1720I GCTNAGC 1 cut(s) 1029
BspACI CCGC 1 cut(s) 290
BspANI GGCC 1 cut(s) 462
BspCNI CTCAG 2 cut(s) 521, 1021
BspLI GGNNCC 3 cut(s) 78, 107, 334
BspMAI CTGCAG 3 cut(s) 73, 265, 828
BspMI ACCTGC 1 cut(s) 829
BspOI GCTAGC 1 cut(s) 11
BspPI GGATC 1 cut(s) 189
BspQI GCTCTTC 1 cut(s) 927
BsrI ACTGG 5 cut(s) 396, 488, 909, 946, 1105
BssECI CCNNGG 2 cut(s) 382, 869
BssMI GATC 2 cut(s) 181, 691
Bst2UI CCWGG 1 cut(s) 384
Bst4CI ACNGT 2 cut(s) 451, 948
Bst6I CTCTTC 4 cut(s) 33, 507, 618, 927
BstC8I GCNNGC 4 cut(s) 9, 290, 1022, 1026
BstDEI CTNAG 2 cut(s) 508, 1029
BstENI CCTNNNNNAGG 1 cut(s) 836
BstH2I RGCGCY 1 cut(s) 832
BstHHI GCGC 1 cut(s) 831
BstKTI GATC 2 cut(s) 184, 694
BstMAI GTCTC 1 cut(s) 658
BstMBI GATC 2 cut(s) 181, 691
BstMWI GCNNNNNNNGC 3 cut(s) 835, 1004, 1030
BstNI CCWGG 1 cut(s) 384
BstNSI RCATGY 3 cut(s) 350, 590, 689
BstSCI CCNGG 1 cut(s) 382
BstSFI CTRYAG 4 cut(s) 69, 261, 302, 824
BstSLI GKGCMC 1 cut(s) 156
BstV1I GCAGC 2 cut(s) 406, 838
BstX2I RGATCY 1 cut(s) 181
BstXI CCANNNNNNTGG 1 cut(s) 664
BstYI RGATCY 1 cut(s) 181
BsuRI GGCC 1 cut(s) 462
BtsIMutI CAGTG 3 cut(s) 403, 495, 916
BveI ACCTGC 1 cut(s) 829
Cac8I GCNNGC 4 cut(s) 9, 290, 1022, 1026
CfoI GCGC 1 cut(s) 831
Cfr13I GGNCC 3 cut(s) 332, 386, 460
CviAII CATG 6 cut(s) 121, 221, 347, 587, 686, 851
DdeI CTNAG 2 cut(s) 508, 1029
DpnI GATC 2 cut(s) 183, 693
DpnII GATC 2 cut(s) 181, 691
DraIII CACNNNGTG 1 cut(s) 442
Eam1104I CTCTTC 4 cut(s) 33, 507, 618, 927
EarI CTCTTC 4 cut(s) 33, 507, 618, 927
Eco24I GRGCYC 1 cut(s) 361
Eco47I GGWCC 2 cut(s) 332, 386
Eco57I CTGAAG 1 cut(s) 642
Eco88I CYCGRG 1 cut(s) 870
EcoNI CCTNNNNNAGG 1 cut(s) 836
EcoO109I RGGNCCY 1 cut(s) 386
EcoRII CCWGG 1 cut(s) 382
EcoT22I ATGCAT 1 cut(s) 816
EcoT38I GRGCYC 1 cut(s) 361
FaeI CATG 6 cut(s) 124, 224, 350, 590, 689, 854
FaqI GGGAC 2 cut(s) 452, 516
FatI CATG 6 cut(s) 120, 220, 346, 586, 685, 850
FauI CCCGC 1 cut(s) 297
FbaI TGATCA 1 cut(s) 691
Fnu4HI GCNGC 2 cut(s) 420, 827
FriOI GRGCYC 1 cut(s) 361
Fsp4HI GCNGC 2 cut(s) 420, 827
FspBI CTAG 4 cut(s) 8, 519, 788, 1013
GlaI GCGC 1 cut(s) 830
GluI GCNGC 2 cut(s) 420, 827
GsuI CTGGAG 1 cut(s) 1122
HaeII RGCGCY 1 cut(s) 832
HaeIII GGCC 1 cut(s) 462
HhaI GCGC 1 cut(s) 831
Hin1II CATG 6 cut(s) 124, 224, 350, 590, 689, 854
Hin6I GCGC 1 cut(s) 829
HinP1I GCGC 1 cut(s) 829
HincII GTYRAC 2 cut(s) 376, 922
HindII GTYRAC 2 cut(s) 376, 922
HinfI GANTC 6 cut(s) 372, 497, 514, 529, 613, 734
HpaI GTTAAC 1 cut(s) 922
HphI GGTGA 7 cut(s) 136, 454, 477, 506, 560, 686, 853
Hpy166II GTNNAC 2 cut(s) 376, 922
Hpy188I TCNGA 5 cut(s) 105, 246, 371, 511, 622
Hpy188III TCNNGA 3 cut(s) 593, 929, 1013
Hpy8I GTNNAC 2 cut(s) 376, 922
HpyAV CCTTC 2 cut(s) 550, 1091
HpyCH4III ACNGT 2 cut(s) 451, 948
HpyCH4V TGCA 6 cut(s) 71, 263, 422, 814, 826, 838
HpyF10VI GCNNNNNNNGC 3 cut(s) 835, 1004, 1030
HpyF3I CTNAG 2 cut(s) 508, 1029
Hsp92II CATG 6 cut(s) 124, 224, 350, 590, 689, 854
HspAI GCGC 1 cut(s) 829
Ksp22I TGATCA 1 cut(s) 691
KspAI GTTAAC 1 cut(s) 922
Kzo9I GATC 2 cut(s) 181, 691
LguI GCTCTTC 1 cut(s) 927
LmnI GCTCC 4 cut(s) 4, 82, 583, 856
Lsp1109I GCAGC 2 cut(s) 406, 838
LweI GCATC 1 cut(s) 823
MaeI CTAG 4 cut(s) 8, 519, 788, 1013
MaeIII GTNAC 2 cut(s) 709, 991
MalI GATC 2 cut(s) 183, 693
MboI GATC 2 cut(s) 181, 691
MboII GAAGA 9 cut(s) 50, 142, 494, 635, 787, 810, 882, 926, 944
MflI RGATCY 1 cut(s) 181
MhlI GDGCHC 2 cut(s) 156, 361
MluCI AATT 5 cut(s) 161, 414, 426, 728, 1109
MlyI GAGTC 2 cut(s) 381, 538
Mph1103I ATGCAT 1 cut(s) 816
MroXI GAANNNNTTC 1 cut(s) 501
MseI TTAA 2 cut(s) 921, 1120
MslI CAYNNNNRTG 2 cut(s) 27, 351
MspA1I CMGCKG 1 cut(s) 1020
MspR9I CCNGG 1 cut(s) 384
MvaI CCWGG 1 cut(s) 384
MwoI GCNNNNNNNGC 3 cut(s) 835, 1004, 1030
NdeII GATC 2 cut(s) 181, 691
NheI GCTAGC 1 cut(s) 7
NlaIII CATG 6 cut(s) 124, 224, 350, 590, 689, 854
NlaIV GGNNCC 3 cut(s) 78, 107, 334
NmuCI GTSAC 2 cut(s) 709, 991
NsiI ATGCAT 1 cut(s) 816
NspI RCATGY 3 cut(s) 350, 590, 689
PaqCI CACCTGC 1 cut(s) 829
PciSI GCTCTTC 1 cut(s) 927
PdmI GAANNNNTTC 1 cut(s) 501
PfeI GAWTC 4 cut(s) 497, 514, 613, 734
PflMI CCANNNNNTGG 1 cut(s) 900
PkrI GCNGC 2 cut(s) 421, 828
PleI GAGTC 2 cut(s) 380, 537
PpsI GAGTC 2 cut(s) 380, 537
PpuMI RGGWCCY 1 cut(s) 386
Psp5II RGGWCCY 1 cut(s) 386
Psp6I CCWGG 1 cut(s) 382
PspGI CCWGG 1 cut(s) 382
PspN4I GGNNCC 3 cut(s) 78, 107, 334
PspPI GGNCC 3 cut(s) 332, 386, 460
PspPPI RGGWCCY 1 cut(s) 386
PstI CTGCAG 3 cut(s) 73, 265, 828
PsuI RGATCY 1 cut(s) 181
PvuII CAGCTG 1 cut(s) 1020
RseI CAYNNNNRTG 2 cut(s) 27, 351
SapI GCTCTTC 1 cut(s) 927
SaqAI TTAA 2 cut(s) 921, 1120
SatI GCNGC 2 cut(s) 420, 827
Sau3AI GATC 2 cut(s) 181, 691
Sau96I GGNCC 3 cut(s) 332, 386, 460
SchI GAGTC 2 cut(s) 381, 538
ScrFI CCNGG 1 cut(s) 384
SduI GDGCHC 2 cut(s) 156, 361
SfaNI GCATC 1 cut(s) 823
SfcI CTRYAG 4 cut(s) 69, 261, 302, 824
SinI GGWCC 2 cut(s) 332, 386
SmiMI CAYNNNNRTG 2 cut(s) 27, 351
SmlI CTYRAG 2 cut(s) 593, 746
SmoI CTYRAG 2 cut(s) 593, 746
Sse9I AATT 5 cut(s) 161, 414, 426, 728, 1109
SsiI CCGC 1 cut(s) 290
SspMI CTAG 4 cut(s) 8, 519, 788, 1013
StyD4I CCNGG 1 cut(s) 382
TaaI ACNGT 2 cut(s) 451, 948
TaqI TCGA 1 cut(s) 351
TasI AATT 5 cut(s) 161, 414, 426, 728, 1109
TfiI GAWTC 4 cut(s) 497, 514, 613, 734
Tru1I TTAA 2 cut(s) 921, 1120
Tru9I TTAA 2 cut(s) 921, 1120
TscAI CASTG 3 cut(s) 403, 495, 916
TseFI GTSAC 2 cut(s) 709, 991
TseI GCWGC 2 cut(s) 419, 826
Tsp45I GTSAC 2 cut(s) 709, 991
TspDTI ATGAA 2 cut(s) 626, 659
TspGWI ACGGA 2 cut(s) 345, 727
TspRI CASTG 3 cut(s) 403, 495, 916
Van91I CCANNNNNTGG 1 cut(s) 900
VpaK11BI GGWCC 2 cut(s) 332, 386
XagI CCTNNNNNAGG 1 cut(s) 836
XapI RAATTY 2 cut(s) 161, 1109
XbaI TCTAGA 1 cut(s) 1012
XceI RCATGY 3 cut(s) 350, 590, 689
XmnI GAANNNNTTC 1 cut(s) 501
XspI CTAG 4 cut(s) 8, 519, 788, 1013
Zsp2I ATGCAT 1 cut(s) 816
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.