FvH4_2g11530

Domain of unknown function (DUF966)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0014395
Physical Location & Seq
Reverse (-)
10084508 .. 10087735
3228 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g11530.t1

Sequence Viewer

Length: 1125 bp
ATGGAAGGCAAGGGCGGAGCAGTAGGTGAAATAAGACGACTTAACATCATCTACTTCCTTTCTTGTATGTGGCGATTTGATCATCCCCATCTCATTCGTGTCGATCATCTTAACCGTAACGGGGTCTTTCTGCGAGACGTAAAGAGGTGGCTTGCGGATTTCCAAGAAAAAGGCAAATCATGGCCAGAGACCTTCAATTGGTCCTGCAAGAGGAGATACAAGAAGGGTTATGTTTGGCAGGACTTGTTAGATGACGACCTCATCACCCCTGTCTCTGACAATGAATATATCCTCAAAGGCTCCCAAATGCTCTCTCATTCCTGTTTTGAGCTGCAGCCACCTAATTCTGAAGAAGCTGCCATTCAAATGCTCCAAACTACAAAAACATCCTTTGAAACGGACCAACCACCTCATAATTCCGGCTCATCCTTGATCCATGTTGATGCAGTAAACATCCAAGGAGATTCCTCAACCATCAAAACCAACGATACAAATCACGAACAATCACCAATAGAAAACTCGGGTTTCTGTTCCAACTTGTTATTGAAGAAGAAGAAGAAGAAGATTAAGTCGTCCGACGAGTACAATAACAAAGACAGCAAAGAAATGGGTTGTAGTACTACTAGTAAATGTTCATCTTCTTCTTCTCCACATAATTCATCATCACCTCAATCTCAATCTGAATCTGTGCCTGTGGGAAAGAGTAGTAAGAGACGACACTTGAGCATGTTCCGCAATTTGATTAACTGCGGTGCTGTGAACACGAACGACGCCGCACACGTCAGGTTGAATCGGGACAGTAACAACAATGACAGCAGCAAAGACATTATCATTGGCAAAGAAAAGAGGGATCAGAACGCAGGTACTGTTGGGTCTGCCGGACTCTTTAGGACATGTATGGATCAGCAGAAGCACCAAAACCATACTTGTACAACTGCTAGCAAAAGGGCCGATGATAGGAACCAAAAAGCAGCTGCTTCTGCTTACAAACCAATACGTTGGCCCCATTGCTCGCAATGCAGGAAGCAGTTTAAGCCAGACAAATTCCACTCGCACATGAAATCCTGCAAAGGAATGAAAGCTCTGTCAAAAAATGCTCCTGCGTCTGTGAGCAAGATGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF966

Protein Analysis

375

Amino Acids

42.13

Weight (kDa)

9.39

Isoelectric Point (pI)

57.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SOK PF06136 15 - 104 6.4e-26 SOSEKI protein DIX-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014395)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05577
fragaria_vesca FvH4_2g11530
malus_domestica MD07G1001300.v1.1 MD07G1001400.v1.1
prunus_persica Prupe.2G001400_v2.0.a1 Prupe.2G001400_v2.0.a1
pyrus_communis pycom07g00180
rosa_chinensis RchiOBHm_Chr1g0313061
rosa_laevigata RLG00000030824
rosa_multiflora Rmu_sc0001606.1_g000003
rosa_roxburghii Rroxscaffold_4G00332510
rosa_rugosa RorugPtG0000700
rosa_samantha Rh1AG000600 Rh1CG002200 Rh1CG004800 Rh1DG000300
rosa_wichuraiana Rw0G008490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 851
AciI CCGC 5 cut(s) 15, 155, 733, 750, 774
AclWI GGATC 3 cut(s) 427, 858, 909
AcoI YGGCCR 1 cut(s) 182
AcsI RAATTY 1 cut(s) 1043
AcuI CTGAAG 1 cut(s) 369
AcyI GRCGYC 1 cut(s) 771
AfaI GTAC 4 cut(s) 584, 619, 865, 931
AfiI CCNNNNNNNGG 4 cut(s) 121, 198, 210, 957
AflIII ACRYGT 2 cut(s) 778, 893
AgsI TTSAA 5 cut(s) 196, 365, 395, 547, 790
AhlI ACTAGT 1 cut(s) 623
AjiI CACGTC 1 cut(s) 781
AluBI AGCT 4 cut(s) 331, 356, 974, 1082
AluI AGCT 4 cut(s) 331, 356, 974, 1082
Alw26I GTCTC 4 cut(s) 129, 182, 277, 706
AlwI GGATC 3 cut(s) 427, 858, 909
AlwNI CAGNNNCTG 1 cut(s) 866
Ama87I CYCGRG 1 cut(s) 520
AoxI GGCC 3 cut(s) 182, 948, 1001
ApeKI GCWGC 6 cut(s) 331, 334, 356, 816, 971, 974
ApoI RAATTY 1 cut(s) 1043
AspS9I GGNCC 4 cut(s) 201, 400, 948, 1002
AsuHPI GGTGA 4 cut(s) 38, 256, 498, 657
AsuNHI GCTAGC 1 cut(s) 938
AvaI CYCGRG 1 cut(s) 520
AvaII GGWCC 2 cut(s) 201, 400
BalI TGGCCA 1 cut(s) 184
BbvI GCAGC 6 cut(s) 318, 343, 346, 828, 961, 983
BccI CCATC 2 cut(s) 96, 482
BclI TGATCA 1 cut(s) 79
BcoDI GTCTC 4 cut(s) 129, 182, 277, 706
BcuI ACTAGT 1 cut(s) 623
BfaI CTAG 2 cut(s) 624, 939
BfmI CTRYAG 1 cut(s) 332
BfuAI ACCTGC 1 cut(s) 851
BisI GCNGC 7 cut(s) 332, 335, 357, 774, 817, 972, 975
BlsI GCNGC 7 cut(s) 333, 336, 358, 775, 818, 973, 976
BmcAI AGTACT 1 cut(s) 619
Bme18I GGWCC 2 cut(s) 201, 400
BmeT110I CYCGRG 1 cut(s) 520
BmgBI CACGTC 1 cut(s) 781
BmgT120I GGNCC 4 cut(s) 201, 400, 948, 1002
BmiI GGNNCC 3 cut(s) 301, 962, 1004
BmsI GCATC 2 cut(s) 433, 1107
BmtI GCTAGC 1 cut(s) 942
BpuEI CTTGAG 1 cut(s) 742
BsaBI GATNNNNATC 1 cut(s) 492
BsaHI GRCGYC 1 cut(s) 771
BsaI GGTCTC 1 cut(s) 182
BsaJI CCNNGG 1 cut(s) 457
Bsc4I CCNNNNNNNGG 4 cut(s) 121, 198, 210, 957
Bse3DI GCAATG 2 cut(s) 1006, 1022
Bse8I GATNNNNATC 1 cut(s) 492
BseDI CCNNGG 1 cut(s) 457
BseGI GGATG 4 cut(s) 82, 386, 425, 453
BseJI GATNNNNATC 1 cut(s) 492
BseLI CCNNNNNNNGG 4 cut(s) 121, 198, 210, 957
BseMI GCAATG 2 cut(s) 1006, 1022
BseRI GAGGAG 1 cut(s) 226
BseXI GCAGC 6 cut(s) 318, 343, 346, 828, 961, 983
BshFI GGCC 3 cut(s) 184, 950, 1003
BsiHKCI CYCGRG 1 cut(s) 520
BsiSI CCGG 2 cut(s) 420, 879
BslFI GGGAC 1 cut(s) 809
BslI CCNNNNNNNGG 4 cut(s) 121, 198, 210, 957
BsmAI GTCTC 4 cut(s) 129, 182, 277, 706
BsmBI CGTCTC 2 cut(s) 129, 706
BsmFI GGGAC 1 cut(s) 809
BsnI GGCC 3 cut(s) 184, 950, 1003
Bso31I GGTCTC 1 cut(s) 182
BsoBI CYCGRG 1 cut(s) 520
Bsp1407I TGTACA 1 cut(s) 929
Bsp143I GATC 5 cut(s) 79, 103, 432, 850, 901
BspACI CCGC 5 cut(s) 15, 155, 733, 750, 774
BspANI GGCC 3 cut(s) 184, 950, 1003
BspLI GGNNCC 3 cut(s) 301, 962, 1004
BspMAI CTGCAG 1 cut(s) 336
BspMI ACCTGC 1 cut(s) 851
BspOI GCTAGC 1 cut(s) 942
BspPI GGATC 3 cut(s) 427, 858, 909
BspTNI GGTCTC 1 cut(s) 182
BsrDI GCAATG 2 cut(s) 1006, 1022
BsrGI TGTACA 1 cut(s) 929
BssECI CCNNGG 1 cut(s) 457
BssMI GATC 5 cut(s) 79, 103, 432, 850, 901
BssNI GRCGYC 1 cut(s) 771
BssT1I CCWWGG 1 cut(s) 457
Bst4CI ACNGT 3 cut(s) 116, 800, 868
BstACI GRCGYC 1 cut(s) 771
BstAUI TGTACA 1 cut(s) 929
BstC8I GCNNGC 3 cut(s) 153, 940, 1013
BstENI CCTNNNNNAGG 1 cut(s) 208
BstF5I GGATG 4 cut(s) 82, 386, 425, 453
BstKTI GATC 5 cut(s) 82, 106, 435, 853, 904
BstMAI GTCTC 4 cut(s) 129, 182, 277, 706
BstMBI GATC 5 cut(s) 79, 103, 432, 850, 901
BstMWI GCNNNNNNNGC 4 cut(s) 732, 980, 1017, 1033
BstNSI RCATGY 2 cut(s) 730, 897
BstSFI CTRYAG 1 cut(s) 332
BstV1I GCAGC 6 cut(s) 318, 343, 346, 828, 961, 983
BstXI CCANNNNNNTGG 1 cut(s) 999
BsuRI GGCC 3 cut(s) 184, 950, 1003
BtrI CACGTC 1 cut(s) 781
BtsCI GGATG 4 cut(s) 82, 386, 425, 453
BveI ACCTGC 1 cut(s) 851
Cac8I GCNNGC 3 cut(s) 153, 940, 1013
CaiI CAGNNNCTG 1 cut(s) 866
Cfr13I GGNCC 4 cut(s) 201, 400, 948, 1002
CseI GACGC 2 cut(s) 779, 1092
Csp6I GTAC 4 cut(s) 583, 618, 864, 930
CviAII CATG 6 cut(s) 180, 437, 727, 894, 1057, 1122
CviQI GTAC 4 cut(s) 583, 618, 864, 930
DpnI GATC 5 cut(s) 81, 105, 434, 852, 903
DpnII GATC 5 cut(s) 79, 103, 432, 850, 901
EaeI YGGCCR 1 cut(s) 182
EciI GGCGGA 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 457
Eco31I GGTCTC 1 cut(s) 182
Eco47I GGWCC 2 cut(s) 201, 400
Eco57I CTGAAG 1 cut(s) 369
Eco88I CYCGRG 1 cut(s) 520
EcoNI CCTNNNNNAGG 1 cut(s) 208
EcoT14I CCWWGG 1 cut(s) 457
ErhI CCWWGG 1 cut(s) 457
Esp3I CGTCTC 2 cut(s) 129, 706
FaeI CATG 6 cut(s) 183, 440, 730, 897, 1060, 1125
FaqI GGGAC 1 cut(s) 809
FatI CATG 6 cut(s) 179, 436, 726, 893, 1056, 1121
FbaI TGATCA 1 cut(s) 79
Fnu4HI GCNGC 7 cut(s) 332, 335, 357, 774, 817, 972, 975
FokI GGATG 4 cut(s) 69, 373, 412, 440
Fsp4HI GCNGC 7 cut(s) 332, 335, 357, 774, 817, 972, 975
FspBI CTAG 2 cut(s) 624, 939
GluI GCNGC 7 cut(s) 332, 335, 357, 774, 817, 972, 975
HaeIII GGCC 3 cut(s) 184, 950, 1003
HapII CCGG 2 cut(s) 420, 879
HgaI GACGC 2 cut(s) 779, 1092
Hin1I GRCGYC 1 cut(s) 771
Hin1II CATG 6 cut(s) 183, 440, 730, 897, 1060, 1125
HinfI GANTC 4 cut(s) 464, 683, 790, 882
HpaII CCGG 2 cut(s) 420, 879
HphI GGTGA 4 cut(s) 38, 256, 498, 657
Hpy166II GTNNAC 2 cut(s) 451, 760
Hpy188I TCNGA 5 cut(s) 277, 349, 577, 682, 855
Hpy188III TCNNGA 2 cut(s) 497, 794
Hpy8I GTNNAC 2 cut(s) 451, 760
Hpy99I CGWCG 2 cut(s) 581, 773
HpyAV CCTTC 2 cut(s) 202, 217
HpyCH4III ACNGT 3 cut(s) 116, 800, 868
HpyCH4IV ACGT 3 cut(s) 138, 780, 997
HpyCH4V TGCA 5 cut(s) 207, 334, 446, 1020, 1068
HpyF10VI GCNNNNNNNGC 4 cut(s) 732, 980, 1017, 1033
HpySE526I ACGT 3 cut(s) 138, 780, 997
Hsp92I GRCGYC 1 cut(s) 771
Hsp92II CATG 6 cut(s) 183, 440, 730, 897, 1060, 1125
Ksp22I TGATCA 1 cut(s) 79
Kzo9I GATC 5 cut(s) 79, 103, 432, 850, 901
LmnI GCTCC 4 cut(s) 17, 305, 375, 1102
Lsp1109I GCAGC 6 cut(s) 318, 343, 346, 828, 961, 983
LweI GCATC 2 cut(s) 433, 1107
MaeI CTAG 2 cut(s) 624, 939
MaeII ACGT 3 cut(s) 138, 780, 997
MaeIII GTNAC 2 cut(s) 116, 800
MalI GATC 5 cut(s) 81, 105, 434, 852, 903
MboI GATC 5 cut(s) 79, 103, 432, 850, 901
MfeI CAATTG 1 cut(s) 196
MlsI TGGCCA 1 cut(s) 184
MluCI AATT 6 cut(s) 196, 343, 415, 655, 736, 1043
MluNI TGGCCA 1 cut(s) 184
MlyI GAGTC 1 cut(s) 876
MmeI TCCRAC 2 cut(s) 558, 600
MnlI CCTC 8 cut(s) 138, 204, 269, 302, 420, 478, 678, 840
Mox20I TGGCCA 1 cut(s) 184
MscI TGGCCA 1 cut(s) 184
MseI TTAA 5 cut(s) 42, 111, 567, 744, 1032
MslI CAYNNNNRTG 2 cut(s) 365, 441
Msp20I TGGCCA 1 cut(s) 184
MspA1I CMGCKG 1 cut(s) 974
MspI CCGG 2 cut(s) 420, 879
MunI CAATTG 1 cut(s) 196
MwoI GCNNNNNNNGC 4 cut(s) 732, 980, 1017, 1033
NdeII GATC 5 cut(s) 79, 103, 432, 850, 901
NheI GCTAGC 1 cut(s) 938
NlaIII CATG 6 cut(s) 183, 440, 730, 897, 1060, 1125
NlaIV GGNNCC 3 cut(s) 301, 962, 1004
NspI RCATGY 2 cut(s) 730, 897
PciI ACATGT 1 cut(s) 893
PcsI WCGNNNNNNNCGW 1 cut(s) 777
PfeI GAWTC 3 cut(s) 464, 683, 790
PkrI GCNGC 7 cut(s) 333, 336, 358, 775, 818, 973, 976
PleI GAGTC 1 cut(s) 876
PpsI GAGTC 1 cut(s) 876
PscI ACATGT 1 cut(s) 893
PspN4I GGNNCC 3 cut(s) 301, 962, 1004
PspPI GGNCC 4 cut(s) 201, 400, 948, 1002
PstI CTGCAG 1 cut(s) 336
PstNI CAGNNNCTG 1 cut(s) 866
PvuII CAGCTG 1 cut(s) 974
RsaI GTAC 4 cut(s) 584, 619, 865, 931
RsaNI GTAC 4 cut(s) 583, 618, 864, 930
RseI CAYNNNNRTG 2 cut(s) 365, 441
SaqAI TTAA 5 cut(s) 42, 111, 567, 744, 1032
SatI GCNGC 7 cut(s) 332, 335, 357, 774, 817, 972, 975
Sau3AI GATC 5 cut(s) 79, 103, 432, 850, 901
Sau96I GGNCC 4 cut(s) 201, 400, 948, 1002
ScaI AGTACT 1 cut(s) 619
SchI GAGTC 1 cut(s) 876
SfaNI GCATC 2 cut(s) 433, 1107
SfcI CTRYAG 1 cut(s) 332
SinI GGWCC 2 cut(s) 201, 400
SmiMI CAYNNNNRTG 2 cut(s) 365, 441
SmlI CTYRAG 1 cut(s) 721
SmoI CTYRAG 1 cut(s) 721
SpeI ACTAGT 1 cut(s) 623
Sse9I AATT 6 cut(s) 196, 343, 415, 655, 736, 1043
SsiI CCGC 5 cut(s) 15, 155, 733, 750, 774
SspMI CTAG 2 cut(s) 624, 939
StyI CCWWGG 1 cut(s) 457
TaaI ACNGT 3 cut(s) 116, 800, 868
TaiI ACGT 3 cut(s) 141, 783, 1000
TaqI TCGA 1 cut(s) 102
TasI AATT 6 cut(s) 196, 343, 415, 655, 736, 1043
TatI WGTACW 3 cut(s) 582, 617, 929
TauI GCSGC 1 cut(s) 776
TfiI GAWTC 3 cut(s) 464, 683, 790
Tru1I TTAA 5 cut(s) 42, 111, 567, 744, 1032
Tru9I TTAA 5 cut(s) 42, 111, 567, 744, 1032
TseI GCWGC 6 cut(s) 331, 334, 356, 816, 971, 974
TspDTI ATGAA 5 cut(s) 297, 624, 648, 1073, 1091
TspGWI ACGGA 1 cut(s) 413
VpaK11BI GGWCC 2 cut(s) 201, 400
XagI CCTNNNNNAGG 1 cut(s) 208
XapI RAATTY 1 cut(s) 1043
XceI RCATGY 2 cut(s) 730, 897
XspI CTAG 2 cut(s) 624, 939
ZrmI AGTACT 1 cut(s) 619
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.