MD07G1001300.v1.1

Domain of unknown function (DUF966)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0014395
Physical Location & Seq
Reverse (-)
201122 .. 206757
5636 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1001300.v1.1.491

Sequence Viewer

Length: 816 bp
ATGAGCCAAGAATCACAGAGGTCTACTTTGACCGATGGATTCGATGATGCGAATGCCATCAAACTGAAACCCAAAGGAGAACGACAAGAACACAACCACTCAGCAGCTGGCAGGGACAAGTTAGAAAGCTCTTTTTTTTATTCCAACTTTTTATTGAAGAGGAAGAAGAAGATTATTAACAAGGACGAAGACGCCAAAGAATTGGCTTCTTCTACAACTCCGTCTTCTTTTTCTTCCTCTGCTTCTTCTTCTTCTTCGTCTTCATATTCACCGTCTCAGCAGACGCCATTGGCAAATGGTAGTACTAAGAGACATTCAAGTGCATCTTCCAACATGTTCCGCAATTTGATTACTTGTGGTGCTGTCGACACAAATGACGCTGTTGTGGTCATGTTGAATCGAGCCAATAAAACTTCCAACAAGTCTAACAGCAGACAAGACAGTATCAAGGCTGATCATCGTATTTCAAAAGGAGATCACAAGTCGGAAGGTAGGTCAACCGGAGTTTTTGGGACTTGCCGGAACCCACAGGAGCTGCCGCAGCAACCCCGCACTGCTACTAGGAAAAGCTATGATGGACAGAAAGATGCGACCAAGCAGCAAAAAGAGGGCGAGTTCAGTGGCCAAAAAGCGGCTTCTGCTGCTTACAGGCCCGTCGGTCGCCCGCATTGCTCGCAGTGCAGGAAGCTGTTTAAGCCAGAAAGATTGCACTCACACATGAAATCGTGCAGAGGAGTGAAAGCTGAAACGAAGATACTTGAAATGGGATCAAGAACTTCAAACTCAGAGGAATCAGCTTCAGCTTTCTTGACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF966

Protein Analysis

272

Amino Acids

29.72

Weight (kDa)

9.8

Isoelectric Point (pI)

51.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014395)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05577
fragaria_vesca FvH4_2g11530
malus_domestica MD07G1001300.v1.1 MD07G1001400.v1.1
prunus_persica Prupe.2G001400_v2.0.a1 Prupe.2G001400_v2.0.a1
pyrus_communis pycom07g00180
rosa_chinensis RchiOBHm_Chr1g0313061
rosa_laevigata RLG00000030824
rosa_multiflora Rmu_sc0001606.1_g000003
rosa_roxburghii Rroxscaffold_4G00332510
rosa_rugosa RorugPtG0000700
rosa_samantha Rh1AG000600 Rh1CG002200 Rh1CG004800 Rh1DG000300
rosa_wichuraiana Rw0G008490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 23, 366
AciI CCGC 5 cut(s) 340, 539, 550, 632, 665
AclWI GGATC 1 cut(s) 775
AcoI YGGCCR 1 cut(s) 622
AcuI CTGAAG 1 cut(s) 783
AcyI GRCGYC 2 cut(s) 192, 284
AfaI GTAC 1 cut(s) 304
AfiI CCNNNNNNNGG 1 cut(s) 631
AflIII ACRYGT 1 cut(s) 333
AgsI TTSAA 6 cut(s) 157, 318, 397, 468, 761, 780
AluBI AGCT 8 cut(s) 107, 129, 535, 570, 688, 743, 797, 803
AluI AGCT 8 cut(s) 107, 129, 535, 570, 688, 743, 797, 803
Alw26I GTCTC 2 cut(s) 279, 304
AlwI GGATC 1 cut(s) 775
AlwNI CAGNNNCTG 2 cut(s) 107, 535
AoxI GGCC 2 cut(s) 622, 650
ApeKI GCWGC 5 cut(s) 104, 535, 541, 598, 641
AspS9I GGNCC 1 cut(s) 651
AsuHPI GGTGA 1 cut(s) 261
BalI TGGCCA 1 cut(s) 624
BbsI GAAGAC 3 cut(s) 195, 216, 252
BbvI GCAGC 5 cut(s) 116, 522, 553, 610, 628
BccI CCATC 3 cut(s) 29, 65, 569
BclI TGATCA 1 cut(s) 454
BcoDI GTCTC 2 cut(s) 279, 304
BfaI CTAG 1 cut(s) 561
BisI GCNGC 7 cut(s) 105, 536, 539, 542, 599, 633, 642
BlsI GCNGC 7 cut(s) 106, 537, 540, 543, 600, 634, 643
BmcAI AGTACT 1 cut(s) 304
BmgT120I GGNCC 1 cut(s) 651
BmiI GGNNCC 1 cut(s) 524
BmsI GCATC 3 cut(s) 37, 332, 577
BpiI GAAGAC 3 cut(s) 195, 216, 252
BsaHI GRCGYC 2 cut(s) 192, 284
BsaWI WCCGGW 1 cut(s) 500
Bsc4I CCNNNNNNNGG 1 cut(s) 631
Bse3DI GCAATG 1 cut(s) 667
BseLI CCNNNNNNNGG 1 cut(s) 631
BseMI GCAATG 1 cut(s) 667
BseMII CTCAG 3 cut(s) 114, 290, 798
BseRI GAGGAG 1 cut(s) 747
BseXI GCAGC 5 cut(s) 116, 522, 553, 610, 628
BsgI GTGCAG 2 cut(s) 700, 748
Bsh1285I CGRYCG 1 cut(s) 661
BshFI GGCC 2 cut(s) 624, 652
BsiEI CGRYCG 1 cut(s) 661
BsiSI CCGG 2 cut(s) 501, 520
BslFI GGGAC 2 cut(s) 128, 526
BslI CCNNNNNNNGG 1 cut(s) 631
BsmAI GTCTC 2 cut(s) 279, 304
BsmBI CGTCTC 1 cut(s) 279
BsmFI GGGAC 2 cut(s) 128, 526
BsmI GAATGC 1 cut(s) 58
BsnI GGCC 2 cut(s) 624, 652
Bsp143I GATC 3 cut(s) 454, 475, 767
BspACI CCGC 5 cut(s) 340, 539, 550, 632, 665
BspANI GGCC 2 cut(s) 624, 652
BspCNI CTCAG 3 cut(s) 113, 289, 797
BspLI GGNNCC 1 cut(s) 524
BspPI GGATC 1 cut(s) 775
BsrDI GCAATG 1 cut(s) 667
BssMI GATC 3 cut(s) 454, 475, 767
BssNI GRCGYC 2 cut(s) 192, 284
Bst4CI ACNGT 2 cut(s) 273, 443
Bst6I CTCTTC 1 cut(s) 152
BstACI GRCGYC 2 cut(s) 192, 284
BstC8I GCNNGC 3 cut(s) 109, 665, 674
BstDEI CTNAG 4 cut(s) 100, 276, 306, 784
BstKTI GATC 3 cut(s) 457, 478, 770
BstMAI GTCTC 2 cut(s) 279, 304
BstMBI GATC 3 cut(s) 454, 475, 767
BstMCI CGRYCG 1 cut(s) 661
BstMWI GCNNNNNNNGC 7 cut(s) 541, 638, 641, 669, 673, 678, 694
BstNSI RCATGY 1 cut(s) 337
BstV1I GCAGC 5 cut(s) 116, 522, 553, 610, 628
BstV2I GAAGAC 3 cut(s) 195, 216, 252
BstXI CCANNNNNNTGG 1 cut(s) 202
BsuRI GGCC 2 cut(s) 624, 652
BtsI GCAGTG 2 cut(s) 552, 683
BtsIMutI CAGTG 3 cut(s) 552, 625, 683
Cac8I GCNNGC 3 cut(s) 109, 665, 674
CaiI CAGNNNCTG 2 cut(s) 107, 535
Cfr13I GGNCC 1 cut(s) 651
CseI GACGC 3 cut(s) 200, 292, 386
Csp6I GTAC 1 cut(s) 303
CviAII CATG 3 cut(s) 334, 391, 718
CviQI GTAC 1 cut(s) 303
DdeI CTNAG 4 cut(s) 100, 276, 306, 784
DpnI GATC 3 cut(s) 456, 477, 769
DpnII GATC 3 cut(s) 454, 475, 767
EaeI YGGCCR 1 cut(s) 622
Eam1104I CTCTTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 152
Eco57I CTGAAG 1 cut(s) 783
Esp3I CGTCTC 1 cut(s) 279
FaeI CATG 3 cut(s) 337, 394, 721
FaiI YATR 5 cut(s) 265, 335, 392, 573, 719
FalI AAGNNNNNCTT 2 cut(s) 310, 342
FaqI GGGAC 2 cut(s) 128, 526
FatI CATG 3 cut(s) 333, 390, 717
FauI CCCGC 2 cut(s) 557, 672
FbaI TGATCA 1 cut(s) 454
FblI GTMKAC 2 cut(s) 23, 366
Fnu4HI GCNGC 7 cut(s) 105, 536, 539, 542, 599, 633, 642
Fsp4HI GCNGC 7 cut(s) 105, 536, 539, 542, 599, 633, 642
FspBI CTAG 1 cut(s) 561
GluI GCNGC 7 cut(s) 105, 536, 539, 542, 599, 633, 642
HaeIII GGCC 2 cut(s) 624, 652
HapII CCGG 2 cut(s) 501, 520
HgaI GACGC 3 cut(s) 200, 292, 386
Hin1I GRCGYC 2 cut(s) 192, 284
Hin1II CATG 3 cut(s) 337, 394, 721
HincII GTYRAC 2 cut(s) 367, 498
HindII GTYRAC 2 cut(s) 367, 498
HinfI GANTC 4 cut(s) 11, 39, 397, 791
HpaII CCGG 2 cut(s) 501, 520
HphI GGTGA 1 cut(s) 261
Hpy166II GTNNAC 3 cut(s) 24, 367, 498
Hpy188I TCNGA 2 cut(s) 487, 787
Hpy188III TCNNGA 2 cut(s) 771, 808
Hpy8I GTNNAC 3 cut(s) 24, 367, 498
Hpy99I CGWCG 1 cut(s) 659
HpyAV CCTTC 1 cut(s) 482
HpyCH4III ACNGT 2 cut(s) 273, 443
HpyCH4V TGCA 4 cut(s) 323, 681, 709, 729
HpyF10VI GCNNNNNNNGC 7 cut(s) 541, 638, 641, 669, 673, 678, 694
HpyF3I CTNAG 4 cut(s) 100, 276, 306, 784
Hsp92I GRCGYC 2 cut(s) 192, 284
Hsp92II CATG 3 cut(s) 337, 394, 721
Ksp22I TGATCA 1 cut(s) 454
Kzo9I GATC 3 cut(s) 454, 475, 767
LmnI GCTCC 1 cut(s) 532
LpnPI CCDG 8 cut(s) 93, 97, 514, 515, 533, 634, 667, 711
Lsp1109I GCAGC 5 cut(s) 116, 522, 553, 610, 628
LweI GCATC 3 cut(s) 37, 332, 577
MaeI CTAG 1 cut(s) 561
MalI GATC 3 cut(s) 456, 477, 769
MboI GATC 3 cut(s) 454, 475, 767
MlsI TGGCCA 1 cut(s) 624
MluCI AATT 2 cut(s) 200, 343
MluNI TGGCCA 1 cut(s) 624
MmeI TCCRAC 4 cut(s) 168, 354, 441, 465
MnlI CCTC 6 cut(s) 12, 153, 247, 601, 725, 781
Mox20I TGGCCA 1 cut(s) 624
MscI TGGCCA 1 cut(s) 624
MseI TTAA 2 cut(s) 177, 693
MslI CAYNNNNRTG 1 cut(s) 318
Msp20I TGGCCA 1 cut(s) 624
MspA1I CMGCKG 1 cut(s) 107
MspI CCGG 2 cut(s) 501, 520
Mva1269I GAATGC 1 cut(s) 58
MwoI GCNNNNNNNGC 7 cut(s) 541, 638, 641, 669, 673, 678, 694
NdeII GATC 3 cut(s) 454, 475, 767
NlaIII CATG 3 cut(s) 337, 394, 721
NlaIV GGNNCC 1 cut(s) 524
NspI RCATGY 1 cut(s) 337
PciI ACATGT 1 cut(s) 333
PctI GAATGC 1 cut(s) 58
PfeI GAWTC 4 cut(s) 11, 39, 397, 791
PkrI GCNGC 7 cut(s) 106, 537, 540, 543, 600, 634, 643
PscI ACATGT 1 cut(s) 333
PspN4I GGNNCC 1 cut(s) 524
PspPI GGNCC 1 cut(s) 651
PstNI CAGNNNCTG 2 cut(s) 107, 535
PvuII CAGCTG 1 cut(s) 107
RsaI GTAC 1 cut(s) 304
RsaNI GTAC 1 cut(s) 303
RseI CAYNNNNRTG 1 cut(s) 318
SalI GTCGAC 1 cut(s) 365
SaqAI TTAA 2 cut(s) 177, 693
SatI GCNGC 7 cut(s) 105, 536, 539, 542, 599, 633, 642
Sau3AI GATC 3 cut(s) 454, 475, 767
Sau96I GGNCC 1 cut(s) 651
ScaI AGTACT 1 cut(s) 304
SfaNI GCATC 3 cut(s) 37, 332, 577
SmiMI CAYNNNNRTG 1 cut(s) 318
Sse9I AATT 2 cut(s) 200, 343
SsiI CCGC 5 cut(s) 340, 539, 550, 632, 665
SspMI CTAG 1 cut(s) 561
TaaI ACNGT 2 cut(s) 273, 443
TaqI TCGA 3 cut(s) 42, 366, 400
TaqII GACCGA 2 cut(s) 47, 647
TasI AATT 2 cut(s) 200, 343
TatI WGTACW 1 cut(s) 302
TauI GCSGC 2 cut(s) 541, 635
TfiI GAWTC 4 cut(s) 11, 39, 397, 791
Tru1I TTAA 2 cut(s) 177, 693
Tru9I TTAA 2 cut(s) 177, 693
TscAI CASTG 3 cut(s) 559, 625, 683
TseI GCWGC 5 cut(s) 104, 535, 541, 598, 641
TspDTI ATGAA 2 cut(s) 252, 734
TspGWI ACGGA 1 cut(s) 210
TspRI CASTG 3 cut(s) 559, 625, 683
XceI RCATGY 1 cut(s) 337
XcmI CCANNNNNNNNNTGG 1 cut(s) 104
XmiI GTMKAC 2 cut(s) 23, 366
XspI CTAG 1 cut(s) 561
ZrmI AGTACT 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.