MD07G1001400.v1.1

Domain of unknown function (DUF966)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0014395
Physical Location & Seq
Reverse (-)
206759 .. 211722
4964 bp
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UTR
Exon/CDS
Intron
MD07G1001400.v1.1.491

Sequence Viewer

Length: 288 bp
ATGGAAGCCAAAGCTGCATCATCCGGAGGTGAAGTAAGGCGACTTCACATTATCTACTTCCTCAGTCGTCGAATGGGTCGCGTTGATCATCCCCATCTCATTCGGGTCAACCATTTTACTCGCAACGGCGTCTATCTGCGAGATGTTAAGAGGTGGCTCGCGGATTTACGAGGAAAGGAAATGCCGGAGGGCTTCGCTTGGTCTTACAAGAGGAGGTACAAGACGGGTTATGTTTGGCAAGACTTGCTGGACGAAGACCTCATCACACCGATATCCGACAATGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF966

Protein Analysis

96

Amino Acids

11.31

Weight (kDa)

9.62

Isoelectric Point (pI)

56.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SOK PF06136 16 - 95 4e-25 SOSEKI protein DIX-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014395)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05577
fragaria_vesca FvH4_2g11530
malus_domestica MD07G1001300.v1.1 MD07G1001400.v1.1
prunus_persica Prupe.2G001400_v2.0.a1 Prupe.2G001400_v2.0.a1
pyrus_communis pycom07g00180
rosa_chinensis RchiOBHm_Chr1g0313061
rosa_laevigata RLG00000030824
rosa_multiflora Rmu_sc0001606.1_g000003
rosa_roxburghii Rroxscaffold_4G00332510
rosa_rugosa RorugPtG0000700
rosa_samantha Rh1AG000600 Rh1CG002200 Rh1CG004800 Rh1DG000300
rosa_wichuraiana Rw0G008490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 81, 161
AccIII TCCGGA 1 cut(s) 23
AciI CCGC 1 cut(s) 161
AcyI GRCGYC 1 cut(s) 129
AfaI GTAC 1 cut(s) 218
AluBI AGCT 1 cut(s) 14
AluI AGCT 1 cut(s) 14
Aor13HI TCCGGA 1 cut(s) 23
ApeKI GCWGC 1 cut(s) 14
AsuHPI GGTGA 1 cut(s) 41
BarI GAAGNNNNNNTAC 2 cut(s) 27, 59
BbsI GAAGAC 1 cut(s) 261
BccI CCATC 1 cut(s) 102
BceAI ACGGC 1 cut(s) 142
BclI TGATCA 1 cut(s) 85
BisI GCNGC 1 cut(s) 15
BlsI GCNGC 1 cut(s) 16
BmsI GCATC 1 cut(s) 26
BpiI GAAGAC 1 cut(s) 261
BsaHI GRCGYC 1 cut(s) 129
BsaWI WCCGGW 1 cut(s) 23
BsaXI ACNNNNNCTCC 2 cut(s) 18, 48
BseAI TCCGGA 1 cut(s) 23
BseGI GGATG 2 cut(s) 20, 88
BseMII CTCAG 1 cut(s) 76
BseRI GAGGAG 1 cut(s) 226
Bsh1236I CGCG 2 cut(s) 81, 161
BsiSI CCGG 2 cut(s) 24, 185
Bsp13I TCCGGA 1 cut(s) 23
Bsp143I GATC 1 cut(s) 85
BspACI CCGC 1 cut(s) 161
BspCNI CTCAG 1 cut(s) 75
BspEI TCCGGA 1 cut(s) 23
BspFNI CGCG 2 cut(s) 81, 161
BssMI GATC 1 cut(s) 85
BssNI GRCGYC 1 cut(s) 129
BstACI GRCGYC 1 cut(s) 129
BstAPI GCANNNNNTGC 1 cut(s) 244
BstC8I GCNNGC 1 cut(s) 159
BstDEI CTNAG 1 cut(s) 62
BstF5I GGATG 2 cut(s) 20, 88
BstFNI CGCG 2 cut(s) 81, 161
BstKTI GATC 1 cut(s) 88
BstMBI GATC 1 cut(s) 85
BstMWI GCNNNNNNNGC 2 cut(s) 14, 244
BstUI CGCG 2 cut(s) 81, 161
BstV2I GAAGAC 1 cut(s) 261
BtsCI GGATG 2 cut(s) 20, 88
Cac8I GCNNGC 1 cut(s) 159
CseI GACGC 1 cut(s) 118
Csp6I GTAC 1 cut(s) 217
CviJI RGCY 4 cut(s) 8, 14, 157, 192
CviKI_1 RGCY 4 cut(s) 8, 14, 157, 192
CviQI GTAC 1 cut(s) 217
DdeI CTNAG 1 cut(s) 62
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
Eco32I GATATC 1 cut(s) 273
EcoRV GATATC 1 cut(s) 273
FaiI YATR 1 cut(s) 231
FbaI TGATCA 1 cut(s) 85
Fnu4HI GCNGC 1 cut(s) 15
FokI GGATG 2 cut(s) 7, 75
Fsp4HI GCNGC 1 cut(s) 15
GluI GCNGC 1 cut(s) 15
HapII CCGG 2 cut(s) 24, 185
HgaI GACGC 1 cut(s) 118
Hin1I GRCGYC 1 cut(s) 129
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HpaII CCGG 2 cut(s) 24, 185
HphI GGTGA 1 cut(s) 41
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 1 cut(s) 277
Hpy188III TCNNGA 1 cut(s) 24
Hpy8I GTNNAC 1 cut(s) 109
Hpy99I CGWCG 1 cut(s) 72
HpyCH4V TGCA 1 cut(s) 17
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 244
HpyF3I CTNAG 1 cut(s) 62
Hsp92I GRCGYC 1 cut(s) 129
Kpn2I TCCGGA 1 cut(s) 23
Ksp22I TGATCA 1 cut(s) 85
Kzo9I GATC 1 cut(s) 85
LpnPI CCDG 3 cut(s) 37, 198, 233
LweI GCATC 1 cut(s) 26
MalI GATC 1 cut(s) 87
MboI GATC 1 cut(s) 85
MboII GAAGA 1 cut(s) 266
MnlI CCTC 8 cut(s) 20, 71, 144, 164, 181, 204, 207, 269
MroI TCCGGA 1 cut(s) 23
MseI TTAA 1 cut(s) 147
MspI CCGG 2 cut(s) 24, 185
MvnI CGCG 2 cut(s) 81, 161
MwoI GCNNNNNNNGC 2 cut(s) 14, 244
NdeII GATC 1 cut(s) 85
PkrI GCNGC 1 cut(s) 16
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
SaqAI TTAA 1 cut(s) 147
SatI GCNGC 1 cut(s) 15
Sau3AI GATC 1 cut(s) 85
SetI ASST 5 cut(s) 16, 31, 155, 218, 261
SfaNI GCATC 1 cut(s) 26
SsiI CCGC 1 cut(s) 161
TaqI TCGA 1 cut(s) 70
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TseI GCWGC 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.