pycom07g00180

Domain of unknown function (DUF966)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0014395
Physical Location & Seq
Reverse (-)
207851 .. 208942
1092 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g00180.1

Sequence Viewer

Length: 810 bp
ATGCTTGGAGTCCTTTCTGATTCTCCTCCGAAAACATTTGCCGAAAATAGAAGTTGCCTGTTTAAAGATGAGGTTGAGCCACCCAATTCAAAACAAGAGGCCTCCTTTCAATTGCACCAACAAATTTATCCAAAGAATAATATAGATATCCAAACAAAAGTATCCTCTGAAATGAGCCAAGAATCACAGAGGTCTACTTTGACCGATGGATTCGATGATGCGAATGCCATCAAACTGAAACCCAAAGGAGAACGACAAGAACACAACCACTCAGCAGCTGGCAGGGACAAGTTAGAAAGCTCTTATTTTTATTCCAACTTTTTATTGAAGAGGAAGAAGAAGATTATTAACAAGGACAAAGACGCCAAAGAATTGGCTTCTTCTACAACTCCGTCTTCTTTTTCTTCCTCTGCTTCTTCTTTTTCTTCGTCTTCACATTCACTGTCTCAGCAGACGCCATTGGCAAATGGTACTACTAAGAGACATTCAAGTGCATCTTCCAACATGTTCCGCAATTTGATTACTTGTGGTGCTGTCGACACAAATGACGCTGTTGTGGTCATGTTGAATCGAGCCAATAAAACTTCCAACAAGTCTACCAGCAGAGATCACAAGTCTGAATGTAGATCAACCGGAGTTTTTGGGACTTGCCGGAATCCACAGGAGCTGCCGCAGCAACCCCACACTGCTAGTAGGAAAAGCTATGATGGACAGAAAGATGCGACCAAGCAGCAAAAAGAGGGCGACTTCAGTGGCCAAAAAGCGGCTACTGCTGCTTACAGGCCCGTCGGTCGCCCGCATTGCTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF966

Protein Analysis

270

Amino Acids

29.62

Weight (kDa)

9.43

Isoelectric Point (pI)

56.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014395)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05577
fragaria_vesca FvH4_2g11530
malus_domestica MD07G1001300.v1.1 MD07G1001400.v1.1
prunus_persica Prupe.2G001400_v2.0.a1 Prupe.2G001400_v2.0.a1
pyrus_communis pycom07g00180
rosa_chinensis RchiOBHm_Chr1g0313061
rosa_laevigata RLG00000030824
rosa_multiflora Rmu_sc0001606.1_g000003
rosa_roxburghii Rroxscaffold_4G00332510
rosa_rugosa RorugPtG0000700
rosa_samantha Rh1AG000600 Rh1CG002200 Rh1CG004800 Rh1DG000300
rosa_wichuraiana Rw0G008490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 194, 537, 596
AciI CCGC 4 cut(s) 511, 671, 764, 797
AcoI YGGCCR 1 cut(s) 754
AcsI RAATTY 1 cut(s) 123
AcuI CTGAAG 1 cut(s) 733
AcyI GRCGYC 2 cut(s) 363, 455
AfaI GTAC 1 cut(s) 472
AfiI CCNNNNNNNGG 1 cut(s) 763
AflIII ACRYGT 1 cut(s) 504
AgsI TTSAA 5 cut(s) 90, 110, 328, 489, 568
AluBI AGCT 4 cut(s) 278, 300, 667, 702
AluI AGCT 4 cut(s) 278, 300, 667, 702
Alw26I GTCTC 2 cut(s) 450, 475
AlwNI CAGNNNCTG 2 cut(s) 278, 667
AoxI GGCC 3 cut(s) 99, 754, 782
ApeKI GCWGC 5 cut(s) 275, 667, 673, 730, 773
ApoI RAATTY 1 cut(s) 123
AspS9I GGNCC 1 cut(s) 783
BaeI ACNNNNGTAYC 2 cut(s) 144, 177
BalI TGGCCA 1 cut(s) 756
BbsI GAAGAC 2 cut(s) 387, 423
BbvI GCAGC 5 cut(s) 287, 654, 685, 742, 760
BccI CCATC 3 cut(s) 200, 236, 701
BciVI GTATCC 1 cut(s) 172
BcoDI GTCTC 2 cut(s) 450, 475
BfaI CTAG 1 cut(s) 690
BfuI GTATCC 1 cut(s) 172
BisI GCNGC 7 cut(s) 276, 668, 671, 674, 731, 765, 774
BlsI GCNGC 7 cut(s) 277, 669, 672, 675, 732, 766, 775
BmgT120I GGNCC 1 cut(s) 783
BmsI GCATC 3 cut(s) 208, 503, 709
BpiI GAAGAC 2 cut(s) 387, 423
BsaHI GRCGYC 2 cut(s) 363, 455
BsaWI WCCGGW 1 cut(s) 632
Bsc4I CCNNNNNNNGG 1 cut(s) 763
Bse3DI GCAATG 1 cut(s) 799
BseLI CCNNNNNNNGG 1 cut(s) 763
BseMI GCAATG 1 cut(s) 799
BseMII CTCAG 2 cut(s) 285, 461
BseRI GAGGAG 1 cut(s) 15
BseXI GCAGC 5 cut(s) 287, 654, 685, 742, 760
Bsh1285I CGRYCG 1 cut(s) 793
BshFI GGCC 3 cut(s) 101, 756, 784
BsiEI CGRYCG 1 cut(s) 793
BsiSI CCGG 2 cut(s) 633, 652
BslFI GGGAC 2 cut(s) 299, 658
BslI CCNNNNNNNGG 1 cut(s) 763
BsmAI GTCTC 2 cut(s) 450, 475
BsmFI GGGAC 2 cut(s) 299, 658
BsmI GAATGC 1 cut(s) 229
BsnI GGCC 3 cut(s) 101, 756, 784
Bsp143I GATC 2 cut(s) 607, 626
BspACI CCGC 4 cut(s) 511, 671, 764, 797
BspANI GGCC 3 cut(s) 101, 756, 784
BspCNI CTCAG 2 cut(s) 284, 460
BsrDI GCAATG 1 cut(s) 799
BssMI GATC 2 cut(s) 607, 626
BssNI GRCGYC 2 cut(s) 363, 455
Bst4CI ACNGT 1 cut(s) 444
Bst6I CTCTTC 1 cut(s) 323
BstACI GRCGYC 2 cut(s) 363, 455
BstC8I GCNNGC 2 cut(s) 280, 797
BstDEI CTNAG 3 cut(s) 271, 447, 477
BstKTI GATC 2 cut(s) 610, 629
BstMAI GTCTC 2 cut(s) 450, 475
BstMBI GATC 2 cut(s) 607, 626
BstMCI CGRYCG 1 cut(s) 793
BstMWI GCNNNNNNNGC 4 cut(s) 673, 770, 773, 801
BstNSI RCATGY 1 cut(s) 508
BstV1I GCAGC 5 cut(s) 287, 654, 685, 742, 760
BstV2I GAAGAC 2 cut(s) 387, 423
BstXI CCANNNNNNTGG 1 cut(s) 373
BsuI GTATCC 1 cut(s) 172
BsuRI GGCC 3 cut(s) 101, 756, 784
BtsI GCAGTG 1 cut(s) 684
BtsIMutI CAGTG 3 cut(s) 440, 684, 757
Cac8I GCNNGC 2 cut(s) 280, 797
CaiI CAGNNNCTG 2 cut(s) 278, 667
Cfr13I GGNCC 1 cut(s) 783
CseI GACGC 3 cut(s) 371, 463, 557
Csp6I GTAC 1 cut(s) 471
CviAII CATG 2 cut(s) 505, 562
CviQI GTAC 1 cut(s) 471
DdeI CTNAG 3 cut(s) 271, 447, 477
DpnI GATC 2 cut(s) 609, 628
DpnII GATC 2 cut(s) 607, 626
DraI TTTAAA 1 cut(s) 64
EaeI YGGCCR 1 cut(s) 754
Eam1104I CTCTTC 1 cut(s) 323
EarI CTCTTC 1 cut(s) 323
Eco147I AGGCCT 1 cut(s) 101
Eco32I GATATC 1 cut(s) 148
Eco57I CTGAAG 1 cut(s) 733
EcoRV GATATC 1 cut(s) 148
FaeI CATG 2 cut(s) 508, 565
FaiI YATR 4 cut(s) 143, 506, 563, 705
FalI AAGNNNNNCTT 2 cut(s) 481, 513
FaqI GGGAC 2 cut(s) 299, 658
FatI CATG 2 cut(s) 504, 561
FauI CCCGC 1 cut(s) 804
FblI GTMKAC 3 cut(s) 194, 537, 596
Fnu4HI GCNGC 7 cut(s) 276, 668, 671, 674, 731, 765, 774
Fsp4HI GCNGC 7 cut(s) 276, 668, 671, 674, 731, 765, 774
FspBI CTAG 1 cut(s) 690
GluI GCNGC 7 cut(s) 276, 668, 671, 674, 731, 765, 774
HaeIII GGCC 3 cut(s) 101, 756, 784
HapII CCGG 2 cut(s) 633, 652
HgaI GACGC 3 cut(s) 371, 463, 557
Hin1I GRCGYC 2 cut(s) 363, 455
Hin1II CATG 2 cut(s) 508, 565
HincII GTYRAC 1 cut(s) 538
HindII GTYRAC 1 cut(s) 538
HinfI GANTC 6 cut(s) 9, 20, 182, 210, 568, 655
HpaII CCGG 2 cut(s) 633, 652
Hpy166II GTNNAC 3 cut(s) 195, 538, 597
Hpy188I TCNGA 4 cut(s) 19, 30, 169, 619
Hpy8I GTNNAC 3 cut(s) 195, 538, 597
Hpy99I CGWCG 1 cut(s) 791
HpyCH4III ACNGT 1 cut(s) 444
HpyCH4V TGCA 2 cut(s) 115, 494
HpyF10VI GCNNNNNNNGC 4 cut(s) 673, 770, 773, 801
HpyF3I CTNAG 3 cut(s) 271, 447, 477
Hsp92I GRCGYC 2 cut(s) 363, 455
Hsp92II CATG 2 cut(s) 508, 565
Kzo9I GATC 2 cut(s) 607, 626
LmnI GCTCC 1 cut(s) 664
LpnPI CCDG 8 cut(s) 71, 264, 268, 613, 646, 647, 665, 766
Lsp1109I GCAGC 5 cut(s) 287, 654, 685, 742, 760
LweI GCATC 3 cut(s) 208, 503, 709
MaeI CTAG 1 cut(s) 690
MalI GATC 2 cut(s) 609, 628
MboI GATC 2 cut(s) 607, 626
MfeI CAATTG 1 cut(s) 110
MlsI TGGCCA 1 cut(s) 756
MluCI AATT 5 cut(s) 85, 110, 123, 371, 514
MluNI TGGCCA 1 cut(s) 756
MlyI GAGTC 1 cut(s) 18
MmeI TCCRAC 3 cut(s) 339, 525, 612
MnlI CCTC 9 cut(s) 36, 64, 91, 112, 175, 183, 324, 418, 733
Mox20I TGGCCA 1 cut(s) 756
MscI TGGCCA 1 cut(s) 756
MseI TTAA 2 cut(s) 63, 348
MslI CAYNNNNRTG 1 cut(s) 489
Msp20I TGGCCA 1 cut(s) 756
MspA1I CMGCKG 1 cut(s) 278
MspI CCGG 2 cut(s) 633, 652
MunI CAATTG 1 cut(s) 110
Mva1269I GAATGC 1 cut(s) 229
MwoI GCNNNNNNNGC 4 cut(s) 673, 770, 773, 801
NdeII GATC 2 cut(s) 607, 626
NlaIII CATG 2 cut(s) 508, 565
NspI RCATGY 1 cut(s) 508
PceI AGGCCT 1 cut(s) 101
PciI ACATGT 1 cut(s) 504
PctI GAATGC 1 cut(s) 229
PfeI GAWTC 5 cut(s) 20, 182, 210, 568, 655
PkrI GCNGC 7 cut(s) 277, 669, 672, 675, 732, 766, 775
PleI GAGTC 1 cut(s) 17
PpsI GAGTC 1 cut(s) 17
PscI ACATGT 1 cut(s) 504
PspPI GGNCC 1 cut(s) 783
PstNI CAGNNNCTG 2 cut(s) 278, 667
PvuII CAGCTG 1 cut(s) 278
RsaI GTAC 1 cut(s) 472
RsaNI GTAC 1 cut(s) 471
RseI CAYNNNNRTG 1 cut(s) 489
SalI GTCGAC 1 cut(s) 536
SaqAI TTAA 2 cut(s) 63, 348
SatI GCNGC 7 cut(s) 276, 668, 671, 674, 731, 765, 774
Sau3AI GATC 2 cut(s) 607, 626
Sau96I GGNCC 1 cut(s) 783
SchI GAGTC 1 cut(s) 18
SetI ASST 6 cut(s) 75, 194, 280, 302, 669, 704
SfaNI GCATC 3 cut(s) 208, 503, 709
SmiMI CAYNNNNRTG 1 cut(s) 489
Sse9I AATT 5 cut(s) 85, 110, 123, 371, 514
SseBI AGGCCT 1 cut(s) 101
SsiI CCGC 4 cut(s) 511, 671, 764, 797
SspMI CTAG 1 cut(s) 690
StuI AGGCCT 1 cut(s) 101
TaaI ACNGT 1 cut(s) 444
TaqI TCGA 3 cut(s) 213, 537, 571
TaqII GACCGA 2 cut(s) 218, 779
TasI AATT 5 cut(s) 85, 110, 123, 371, 514
TauI GCSGC 2 cut(s) 673, 767
TfiI GAWTC 5 cut(s) 20, 182, 210, 568, 655
Tru1I TTAA 2 cut(s) 63, 348
Tru9I TTAA 2 cut(s) 63, 348
TscAI CASTG 3 cut(s) 447, 691, 757
TseI GCWGC 5 cut(s) 275, 667, 673, 730, 773
TspGWI ACGGA 1 cut(s) 381
TspRI CASTG 3 cut(s) 447, 691, 757
XapI RAATTY 1 cut(s) 123
XceI RCATGY 1 cut(s) 508
XcmI CCANNNNNNNNNTGG 1 cut(s) 275
XmiI GTMKAC 3 cut(s) 194, 537, 596
XspI CTAG 1 cut(s) 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.