Rmu_sc0001606.1_g000003

Domain of unknown function (DUF966)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001606.1
OG0014395
Physical Location & Seq
Reverse (-)
10453 .. 13300
2848 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001606.1_g000003.1.cds

Sequence Viewer

Length: 864 bp
atgaagaaggtaaagattcctgctcttccattcactgccaaatcacttggtttagttgagactcctagtggtatgctagtgccagcggaggtcatgatgtcgagggatggaggtcctattacagatcctccgcattcctatttatattctgctgaaaagaagaggtgcttgctcaaagagctgcagccacctaattctgaagaagcgccatttcaaatgcaccatattacaaaaacttcatttgaaacggaccagcaagaatcaccacctcataattccggctcatctttgatcgatgctgatgcagtgaacatccgaggagatcagaaacgctcgtcgtcgttctcaaccatcaaagccaacagtacaaatcacgaacagagcaaggacaagtcatcaatagaaaactcttgtttctattcgaatttgttattgaagaagaagaaggagtggtccagcgacaaagacagagacagcaaagagatgggttgtagcagtactactacttcatcttcttcttcttctccacataattcatcacctcaatctcaatcggtgcccttgggaaagagtactaaaaaacaacatttaagcatcttccgcaatttgatcaactgtggtgctgtggacacgaacgacaccgtattcgtcaggttgaatcgggacagtaagacatattccactaacaacaataagcctcttaatcgcagcaggcaagacattattattcgaaaagaaaagagggagaaagcaggtactgtagggtatgccggactttttaggacatgtatgaatcagcaggagcggccacagcaaccccaaaaccatactactactgctaggtatcatccaatccgaccctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF966

Protein Analysis

287

Amino Acids

32.06

Weight (kDa)

9.53

Isoelectric Point (pI)

66.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014395)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05577
fragaria_vesca FvH4_2g11530
malus_domestica MD07G1001300.v1.1 MD07G1001400.v1.1
prunus_persica Prupe.2G001400_v2.0.a1 Prupe.2G001400_v2.0.a1
pyrus_communis pycom07g00180
rosa_chinensis RchiOBHm_Chr1g0313061
rosa_laevigata RLG00000030824
rosa_multiflora Rmu_sc0001606.1_g000003
rosa_roxburghii Rroxscaffold_4G00332510
rosa_rugosa RorugPtG0000700
rosa_samantha Rh1AG000600 Rh1CG002200 Rh1CG004800 Rh1DG000300
rosa_wichuraiana Rw0G008490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 743
AccB1I GGYRCC 1 cut(s) 556
AccBSI CCGCTC 1 cut(s) 805
AciI CCGC 4 cut(s) 86, 131, 601, 805
AclWI GGATC 1 cut(s) 119
AcoI YGGCCR 1 cut(s) 806
AcsI RAATTY 1 cut(s) 424
AcuI CTGAAG 1 cut(s) 219
AfaI GTAC 4 cut(s) 367, 499, 574, 757
AflIII ACRYGT 1 cut(s) 785
AgsI TTSAA 4 cut(s) 215, 245, 436, 658
AluBI AGCT 1 cut(s) 181
AluI AGCT 1 cut(s) 181
Alw26I GTCTC 2 cut(s) 53, 465
AlwI GGATC 1 cut(s) 119
AlwNI CAGNNNCTG 1 cut(s) 758
AoxI GGCC 1 cut(s) 806
ApeKI GCWGC 3 cut(s) 181, 184, 708
ApoI RAATTY 1 cut(s) 424
ArsI GACNNNNNNTTYG 2 cut(s) 629, 661
AspLEI GCGC 1 cut(s) 208
AspS9I GGNCC 3 cut(s) 113, 250, 453
AsuHPI GGTGA 2 cut(s) 255, 531
AsuII TTCGAA 2 cut(s) 422, 730
AvaII GGWCC 3 cut(s) 113, 250, 453
BaeGI GKGCMC 1 cut(s) 561
BanI GGYRCC 1 cut(s) 556
BarI GAAGNNNNNNTAC 2 cut(s) 490, 522
BbvI GCAGC 3 cut(s) 168, 196, 720
BccI CCATC 3 cut(s) 101, 359, 478
BcgI CGANNNNNNTGC 2 cut(s) 284, 318
BclI TGATCA 1 cut(s) 609
BcoDI GTCTC 2 cut(s) 53, 465
BfaI CTAG 4 cut(s) 66, 77, 840, 862
BfmI CTRYAG 2 cut(s) 182, 759
BfoI RGCGCY 1 cut(s) 209
BfuAI ACCTGC 1 cut(s) 743
BisI GCNGC 4 cut(s) 182, 185, 709, 806
BlsI GCNGC 4 cut(s) 183, 186, 710, 807
BmcAI AGTACT 2 cut(s) 499, 574
Bme18I GGWCC 3 cut(s) 113, 250, 453
BmgT120I GGNCC 3 cut(s) 113, 250, 453
BmiI GGNNCC 1 cut(s) 558
BmsI GCATC 3 cut(s) 286, 292, 603
Bpu14I TTCGAA 2 cut(s) 422, 730
Bsa29I ATCGAT 1 cut(s) 294
BsaJI CCNNGG 2 cut(s) 316, 561
BsaXI ACNNNNNCTCC 2 cut(s) 112, 142
BseCI ATCGAT 1 cut(s) 294
BseDI CCNNGG 2 cut(s) 316, 561
BseGI GGATG 3 cut(s) 112, 312, 847
BseRI GAGGAG 1 cut(s) 333
BseSI GKGCMC 1 cut(s) 561
BseXI GCAGC 3 cut(s) 168, 196, 720
BshFI GGCC 1 cut(s) 808
BshNI GGYRCC 1 cut(s) 556
BshVI ATCGAT 1 cut(s) 294
BsiSI CCGG 2 cut(s) 279, 771
BslFI GGGAC 1 cut(s) 677
BsmAI GTCTC 2 cut(s) 53, 465
BsmFI GGGAC 1 cut(s) 677
BsmI GAATGC 1 cut(s) 133
BsnI GGCC 1 cut(s) 808
Bsp119I TTCGAA 2 cut(s) 422, 730
Bsp1286I GDGCHC 1 cut(s) 561
Bsp143I GATC 4 cut(s) 124, 291, 322, 609
BspACI CCGC 4 cut(s) 86, 131, 601, 805
BspANI GGCC 1 cut(s) 808
BspDI ATCGAT 1 cut(s) 294
BspHI TCATGA 1 cut(s) 93
BspLI GGNNCC 1 cut(s) 558
BspMAI CTGCAG 1 cut(s) 186
BspMI ACCTGC 1 cut(s) 743
BspPI GGATC 1 cut(s) 119
BspQI GCTCTTC 1 cut(s) 30
BspT104I TTCGAA 2 cut(s) 422, 730
BspT107I GGYRCC 1 cut(s) 556
BsrBI CCGCTC 1 cut(s) 805
BssECI CCNNGG 2 cut(s) 316, 561
BssMI GATC 4 cut(s) 124, 291, 322, 609
BssT1I CCWWGG 1 cut(s) 561
Bst4CI ACNGT 5 cut(s) 365, 617, 643, 668, 760
Bst6I CTCTTC 2 cut(s) 30, 155
BstBI TTCGAA 2 cut(s) 422, 730
BstC8I GCNNGC 3 cut(s) 84, 170, 713
BstF5I GGATG 3 cut(s) 112, 312, 847
BstH2I RGCGCY 1 cut(s) 209
BstHHI GCGC 1 cut(s) 208
BstKTI GATC 4 cut(s) 127, 294, 325, 612
BstMAI GTCTC 2 cut(s) 53, 465
BstMBI GATC 4 cut(s) 124, 291, 322, 609
BstMWI GCNNNNNNNGC 4 cut(s) 178, 600, 805, 811
BstNSI RCATGY 1 cut(s) 789
BstSFI CTRYAG 2 cut(s) 182, 759
BstSLI GKGCMC 1 cut(s) 561
BstV1I GCAGC 3 cut(s) 168, 196, 720
BstX2I RGATCY 1 cut(s) 124
BstYI RGATCY 1 cut(s) 124
Bsu15I ATCGAT 1 cut(s) 294
BsuRI GGCC 1 cut(s) 808
BsuTUI ATCGAT 1 cut(s) 294
BtsCI GGATG 3 cut(s) 112, 312, 847
BtsI GCAGTG 2 cut(s) 33, 312
BtsIMutI CAGTG 2 cut(s) 33, 312
BveI ACCTGC 1 cut(s) 743
Cac8I GCNNGC 3 cut(s) 84, 170, 713
CaiI CAGNNNCTG 1 cut(s) 758
CciI TCATGA 1 cut(s) 93
CfoI GCGC 1 cut(s) 208
Cfr13I GGNCC 3 cut(s) 113, 250, 453
ClaI ATCGAT 1 cut(s) 294
Csp6I GTAC 4 cut(s) 366, 498, 573, 756
CviAII CATG 2 cut(s) 94, 786
CviJI RGCY 6 cut(s) 181, 187, 282, 359, 697, 808
CviKI_1 RGCY 6 cut(s) 181, 187, 282, 359, 697, 808
CviQI GTAC 4 cut(s) 366, 498, 573, 756
DpnI GATC 4 cut(s) 126, 293, 324, 611
DpnII GATC 4 cut(s) 124, 291, 322, 609
EaeI YGGCCR 1 cut(s) 806
Eam1104I CTCTTC 2 cut(s) 30, 155
EarI CTCTTC 2 cut(s) 30, 155
Eco130I CCWWGG 1 cut(s) 561
Eco47I GGWCC 3 cut(s) 113, 250, 453
Eco57I CTGAAG 1 cut(s) 219
EcoO109I RGGNCCY 1 cut(s) 113
EcoT14I CCWWGG 1 cut(s) 561
ErhI CCWWGG 1 cut(s) 561
FaeI CATG 2 cut(s) 97, 789
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FaqI GGGAC 1 cut(s) 677
FatI CATG 2 cut(s) 93, 785
FbaI TGATCA 1 cut(s) 609
Fnu4HI GCNGC 4 cut(s) 182, 185, 709, 806
FokI GGATG 3 cut(s) 119, 299, 834
Fsp4HI GCNGC 4 cut(s) 182, 185, 709, 806
FspBI CTAG 4 cut(s) 66, 77, 840, 862
GlaI GCGC 1 cut(s) 207
GluI GCNGC 4 cut(s) 182, 185, 709, 806
HaeII RGCGCY 1 cut(s) 209
HaeIII GGCC 1 cut(s) 808
HapII CCGG 2 cut(s) 279, 771
HhaI GCGC 1 cut(s) 208
Hin1II CATG 2 cut(s) 97, 789
Hin6I GCGC 1 cut(s) 206
HinP1I GCGC 1 cut(s) 206
HinfI GANTC 5 cut(s) 16, 61, 260, 658, 793
HpaII CCGG 2 cut(s) 279, 771
HphI GGTGA 2 cut(s) 255, 531
Hpy166II GTNNAC 2 cut(s) 310, 628
Hpy188I TCNGA 4 cut(s) 199, 317, 327, 857
Hpy188III TCNNGA 3 cut(s) 94, 374, 662
Hpy8I GTNNAC 2 cut(s) 310, 628
Hpy99I CGWCG 2 cut(s) 340, 343
HpyAV CCTTC 1 cut(s) 439
HpyCH4III ACNGT 5 cut(s) 365, 617, 643, 668, 760
HpyCH4V TGCA 3 cut(s) 184, 220, 305
HpyF10VI GCNNNNNNNGC 4 cut(s) 178, 600, 805, 811
Hsp92II CATG 2 cut(s) 97, 789
HspAI GCGC 1 cut(s) 206
Ksp22I TGATCA 1 cut(s) 609
Kzo9I GATC 4 cut(s) 124, 291, 322, 609
LguI GCTCTTC 1 cut(s) 30
LmnI GCTCC 1 cut(s) 802
Lsp1109I GCAGC 3 cut(s) 168, 196, 720
LweI GCATC 3 cut(s) 286, 292, 603
MaeI CTAG 4 cut(s) 66, 77, 840, 862
MalI GATC 4 cut(s) 126, 293, 324, 611
MbiI CCGCTC 1 cut(s) 805
MboI GATC 4 cut(s) 124, 291, 322, 609
MflI RGATCY 1 cut(s) 124
MhlI GDGCHC 1 cut(s) 561
MluCI AATT 5 cut(s) 193, 274, 424, 532, 604
MlyI GAGTC 1 cut(s) 55
MseI TTAA 2 cut(s) 590, 702
MspA1I CMGCKG 1 cut(s) 86
MspI CCGG 2 cut(s) 279, 771
Mva1269I GAATGC 1 cut(s) 133
MwoI GCNNNNNNNGC 4 cut(s) 178, 600, 805, 811
NdeII GATC 4 cut(s) 124, 291, 322, 609
NlaIII CATG 2 cut(s) 97, 789
NlaIV GGNNCC 1 cut(s) 558
NspI RCATGY 1 cut(s) 789
NspV TTCGAA 2 cut(s) 422, 730
PagI TCATGA 1 cut(s) 93
PciI ACATGT 1 cut(s) 785
PciSI GCTCTTC 1 cut(s) 30
PctI GAATGC 1 cut(s) 133
PfeI GAWTC 4 cut(s) 16, 260, 658, 793
PkrI GCNGC 4 cut(s) 183, 186, 710, 807
PleI GAGTC 1 cut(s) 55
PpsI GAGTC 1 cut(s) 55
PpuMI RGGWCCY 1 cut(s) 113
PscI ACATGT 1 cut(s) 785
Psp5II RGGWCCY 1 cut(s) 113
PspN4I GGNNCC 1 cut(s) 558
PspPI GGNCC 3 cut(s) 113, 250, 453
PspPPI RGGWCCY 1 cut(s) 113
PstI CTGCAG 1 cut(s) 186
PstNI CAGNNNCTG 1 cut(s) 758
PsuI RGATCY 1 cut(s) 124
RsaI GTAC 4 cut(s) 367, 499, 574, 757
RsaNI GTAC 4 cut(s) 366, 498, 573, 756
SapI GCTCTTC 1 cut(s) 30
SaqAI TTAA 2 cut(s) 590, 702
SatI GCNGC 4 cut(s) 182, 185, 709, 806
Sau3AI GATC 4 cut(s) 124, 291, 322, 609
Sau96I GGNCC 3 cut(s) 113, 250, 453
ScaI AGTACT 2 cut(s) 499, 574
SchI GAGTC 1 cut(s) 55
SduI GDGCHC 1 cut(s) 561
SfaNI GCATC 3 cut(s) 286, 292, 603
SfcI CTRYAG 2 cut(s) 182, 759
SfuI TTCGAA 2 cut(s) 422, 730
SinI GGWCC 3 cut(s) 113, 250, 453
Sse9I AATT 5 cut(s) 193, 274, 424, 532, 604
SsiI CCGC 4 cut(s) 86, 131, 601, 805
SspMI CTAG 4 cut(s) 66, 77, 840, 862
StyI CCWWGG 1 cut(s) 561
TaaI ACNGT 5 cut(s) 365, 617, 643, 668, 760
TaqI TCGA 4 cut(s) 101, 294, 422, 730
TasI AATT 5 cut(s) 193, 274, 424, 532, 604
TatI WGTACW 3 cut(s) 365, 497, 572
TauI GCSGC 1 cut(s) 808
TfiI GAWTC 4 cut(s) 16, 260, 658, 793
Tru1I TTAA 2 cut(s) 590, 702
Tru9I TTAA 2 cut(s) 590, 702
TscAI CASTG 2 cut(s) 40, 312
TseI GCWGC 3 cut(s) 181, 184, 708
TspDTI ATGAA 5 cut(s) 17, 228, 498, 525, 806
TspGWI ACGGA 1 cut(s) 263
TspRI CASTG 2 cut(s) 40, 312
VpaK11BI GGWCC 3 cut(s) 113, 250, 453
XapI RAATTY 1 cut(s) 424
XceI RCATGY 1 cut(s) 789
XspI CTAG 4 cut(s) 66, 77, 840, 862
ZrmI AGTACT 2 cut(s) 499, 574
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.