Rw0G008490

Domain of unknown function (DUF966)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00322
OG0014395
Physical Location & Seq
Forward (+)
37217 .. 41758
4542 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G008490.1

Sequence Viewer

Length: 1221 bp
ATGGAAGGCAGAGGCGGAGTAGTAGGTGAAATACGGCGACTTAACATCATCTACTTCCTATGTAGTCTCGGCCGCATTGATCATCCCCATCTCATTCGTGTCCATCATCTTAACCGAAACGGCGTCTTTCTGCGAGACATCAAGAGGTGGCTTGCGGATTTACGAGGGAAGGATATGCCAAAGACCTTCACTTGGTCTTACAAGAGGAGGTACAAGAAGGGTTATGTTTGGCAAGACTTGTTAGATGACGACCTCATCACCCCTATCTCTGACAATGAATATGTCCTCAAAGGCTCCCAAATTCTCTCTTATTCCTCTTTTGATCCTCCGCATTCCTATTTATATTCTGCTGAAAAGAAGAGGTGCTTGCTCAAAGAGCTGCAGCCACCTAATTCTGAAGAAGCGCCATTTCAAATGCACCATATTACAAAAACTTCATTTGAAACGGACCAGCAAGAATCACCACCTCATAATTCCGGCTCATCTTTGATCGATGCTGATGCAGTGAACATCCGAGGAGATCAGAAACGCTCGTCGTCGTTCTCAACCATCAAAGCCAACAGTACAAATCACGAACAGAGCAAGGACAAGTCATCAATAGAAAACTCTTGTTTCTATTCGAATTTGTTATTGAAGAAGAAGAAGGAGTGGTCCAGCGACAAAGACAGAGACAGCAAAGAGATGGGTTGTAGCAGTACTACTACTTCATCTTCTTCTTCTTCTCCACATAATTCATCACCTCAATCTCAATCGGTGCCCTTGGGAAAGAGTACTAAAAAACAACATTTAAGCATCTTCCGCAATTTGATCAACTGTGGTGCTGTGGACACGAACGACACCGTATTCGTCAGGTTGAATCGGGACAGTAAGACATATTCCACTAACAACAATAAGCCTCTTAATCGCAGCAGGCAAGACATTATTATTCGAAAAGAAAAGAGGGAGAAAGCAGGTACTGTAGGGTATGCCGGACTTTTTAGGACATGTATGAATCAGCAGGAGCGGCCACAGCAACCCCAAAACCATACTACTACTGCTAGCAAAAGCGATGATAGGAACCAAAAAACAGCTTCTTCTACTTACAGGCCAATCCGTGGGCCACATTGCTCGCATTGCAGGAAGCAGTTTAAGCCAGAGAAATTGCACTCGCACATGAAATCCTGCAGCGGAATAAAGGCTCTGTCAAAAACTGCTCCGGATTCTGTGGTCAAGATGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF966

Protein Analysis

406

Amino Acids

46.21

Weight (kDa)

9.65

Isoelectric Point (pI)

58.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SOK PF06136 15 - 102 1.1e-29 SOSEKI protein DIX-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014395)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05577
fragaria_vesca FvH4_2g11530
malus_domestica MD07G1001300.v1.1 MD07G1001400.v1.1
prunus_persica Prupe.2G001400_v2.0.a1 Prupe.2G001400_v2.0.a1
pyrus_communis pycom07g00180
rosa_chinensis RchiOBHm_Chr1g0313061
rosa_laevigata RLG00000030824
rosa_multiflora Rmu_sc0001606.1_g000003
rosa_roxburghii Rroxscaffold_4G00332510
rosa_rugosa RorugPtG0000700
rosa_samantha Rh1AG000600 Rh1CG002200 Rh1CG004800 Rh1DG000300
rosa_wichuraiana Rw0G008490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 941
AccB1I GGYRCC 1 cut(s) 754
AccB7I CCANNNNNTGG 1 cut(s) 1094
AccBSI CCGCTC 1 cut(s) 1003
AccIII TCCGGA 1 cut(s) 1195
AciI CCGC 7 cut(s) 15, 73, 155, 329, 799, 1003, 1167
AclWI GGATC 1 cut(s) 317
AcoI YGGCCR 2 cut(s) 70, 1004
AcsI RAATTY 2 cut(s) 300, 622
AcuI CTGAAG 1 cut(s) 417
AcyI GRCGYC 1 cut(s) 123
AfaI GTAC 5 cut(s) 212, 565, 697, 772, 955
AfiI CCNNNNNNNGG 2 cut(s) 192, 1094
AflIII ACRYGT 1 cut(s) 983
AgsI TTSAA 4 cut(s) 413, 443, 634, 856
AluBI AGCT 2 cut(s) 379, 1070
AluI AGCT 2 cut(s) 379, 1070
Alw26I GTCTC 3 cut(s) 71, 129, 663
AlwI GGATC 1 cut(s) 317
AlwNI CAGNNNCTG 1 cut(s) 956
Aor13HI TCCGGA 1 cut(s) 1195
AoxI GGCC 4 cut(s) 70, 1004, 1085, 1097
ApeKI GCWGC 4 cut(s) 379, 382, 906, 1164
ApoI RAATTY 2 cut(s) 300, 622
ArsI GACNNNNNNTTYG 2 cut(s) 827, 859
AspLEI GCGC 1 cut(s) 406
AspS9I GGNCC 3 cut(s) 448, 651, 1097
AsuHPI GGTGA 4 cut(s) 38, 250, 453, 729
AsuII TTCGAA 2 cut(s) 620, 928
AsuNHI GCTAGC 1 cut(s) 1037
AvaII GGWCC 2 cut(s) 448, 651
BaeGI GKGCMC 1 cut(s) 759
BanI GGYRCC 1 cut(s) 754
BarI GAAGNNNNNNTAC 2 cut(s) 688, 720
BbvI GCAGC 4 cut(s) 366, 394, 918, 1176
BccI CCATC 4 cut(s) 96, 111, 557, 676
BceAI ACGGC 2 cut(s) 50, 136
BcgI CGANNNNNNTGC 2 cut(s) 482, 516
BclI TGATCA 2 cut(s) 79, 807
BcoDI GTCTC 3 cut(s) 71, 129, 663
BfaI CTAG 1 cut(s) 1038
BfmI CTRYAG 3 cut(s) 380, 957, 1162
BfoI RGCGCY 1 cut(s) 407
BfuAI ACCTGC 1 cut(s) 941
BisI GCNGC 6 cut(s) 73, 380, 383, 907, 1004, 1165
BlsI GCNGC 6 cut(s) 74, 381, 384, 908, 1005, 1166
BmcAI AGTACT 2 cut(s) 697, 772
Bme18I GGWCC 2 cut(s) 448, 651
BmgT120I GGNCC 3 cut(s) 448, 651, 1097
BmiI GGNNCC 3 cut(s) 295, 756, 1058
BmsI GCATC 4 cut(s) 484, 490, 801, 1203
BmtI GCTAGC 1 cut(s) 1041
Bpu14I TTCGAA 2 cut(s) 620, 928
Bsa29I ATCGAT 1 cut(s) 492
BsaHI GRCGYC 1 cut(s) 123
BsaJI CCNNGG 3 cut(s) 514, 759, 1093
BsaWI WCCGGW 1 cut(s) 1195
Bsc4I CCNNNNNNNGG 2 cut(s) 192, 1094
Bse3DI GCAATG 2 cut(s) 1102, 1111
BseAI TCCGGA 1 cut(s) 1195
BseCI ATCGAT 1 cut(s) 492
BseDI CCNNGG 3 cut(s) 514, 759, 1093
BseGI GGATG 2 cut(s) 82, 510
BseLI CCNNNNNNNGG 2 cut(s) 192, 1094
BseMI GCAATG 2 cut(s) 1102, 1111
BseRI GAGGAG 2 cut(s) 220, 531
BseSI GKGCMC 1 cut(s) 759
BseX3I CGGCCG 1 cut(s) 70
BseXI GCAGC 4 cut(s) 366, 394, 918, 1176
Bsh1285I CGRYCG 1 cut(s) 73
BshFI GGCC 4 cut(s) 72, 1006, 1087, 1099
BshNI GGYRCC 1 cut(s) 754
BshVI ATCGAT 1 cut(s) 492
BsiEI CGRYCG 1 cut(s) 73
BsiSI CCGG 3 cut(s) 477, 969, 1196
BslFI GGGAC 1 cut(s) 875
BslI CCNNNNNNNGG 2 cut(s) 192, 1094
BsmAI GTCTC 3 cut(s) 71, 129, 663
BsmFI GGGAC 1 cut(s) 875
BsmI GAATGC 1 cut(s) 331
BsnI GGCC 4 cut(s) 72, 1006, 1087, 1099
Bsp119I TTCGAA 2 cut(s) 620, 928
Bsp1286I GDGCHC 1 cut(s) 759
Bsp13I TCCGGA 1 cut(s) 1195
Bsp143I GATC 5 cut(s) 79, 322, 489, 520, 807
BspACI CCGC 7 cut(s) 15, 73, 155, 329, 799, 1003, 1167
BspANI GGCC 4 cut(s) 72, 1006, 1087, 1099
BspDI ATCGAT 1 cut(s) 492
BspEI TCCGGA 1 cut(s) 1195
BspLI GGNNCC 3 cut(s) 295, 756, 1058
BspMAI CTGCAG 2 cut(s) 384, 1166
BspMI ACCTGC 1 cut(s) 941
BspOI GCTAGC 1 cut(s) 1041
BspPI GGATC 1 cut(s) 317
BspT104I TTCGAA 2 cut(s) 620, 928
BspT107I GGYRCC 1 cut(s) 754
BsrBI CCGCTC 1 cut(s) 1003
BsrDI GCAATG 2 cut(s) 1102, 1111
BssECI CCNNGG 3 cut(s) 514, 759, 1093
BssMI GATC 5 cut(s) 79, 322, 489, 520, 807
BssNI GRCGYC 1 cut(s) 123
BssT1I CCWWGG 1 cut(s) 759
Bst4CI ACNGT 5 cut(s) 563, 815, 841, 866, 958
Bst6I CTCTTC 1 cut(s) 353
BstACI GRCGYC 1 cut(s) 123
BstBI TTCGAA 2 cut(s) 620, 928
BstC8I GCNNGC 5 cut(s) 153, 368, 911, 1039, 1109
BstDSI CCRYGG 1 cut(s) 1093
BstF5I GGATG 2 cut(s) 82, 510
BstH2I RGCGCY 1 cut(s) 407
BstHHI GCGC 1 cut(s) 406
BstKTI GATC 5 cut(s) 82, 325, 492, 523, 810
BstMAI GTCTC 3 cut(s) 71, 129, 663
BstMBI GATC 5 cut(s) 79, 322, 489, 520, 807
BstMCI CGRYCG 1 cut(s) 73
BstMWI GCNNNNNNNGC 6 cut(s) 376, 798, 1003, 1009, 1113, 1129
BstNSI RCATGY 1 cut(s) 987
BstSFI CTRYAG 3 cut(s) 380, 957, 1162
BstSLI GKGCMC 1 cut(s) 759
BstV1I GCAGC 4 cut(s) 366, 394, 918, 1176
BstZI CGGCCG 1 cut(s) 70
Bsu15I ATCGAT 1 cut(s) 492
BsuRI GGCC 4 cut(s) 72, 1006, 1087, 1099
BsuTUI ATCGAT 1 cut(s) 492
BtgI CCRYGG 1 cut(s) 1093
BtgZI GCGATG 1 cut(s) 1062
BtsCI GGATG 2 cut(s) 82, 510
BtsI GCAGTG 1 cut(s) 510
BtsIMutI CAGTG 1 cut(s) 510
BveI ACCTGC 1 cut(s) 941
Cac8I GCNNGC 5 cut(s) 153, 368, 911, 1039, 1109
CaiI CAGNNNCTG 1 cut(s) 956
CfoI GCGC 1 cut(s) 406
Cfr13I GGNCC 3 cut(s) 448, 651, 1097
ClaI ATCGAT 1 cut(s) 492
CseI GACGC 1 cut(s) 112
Csp6I GTAC 5 cut(s) 211, 564, 696, 771, 954
CviAII CATG 3 cut(s) 984, 1153, 1218
CviQI GTAC 5 cut(s) 211, 564, 696, 771, 954
DpnI GATC 5 cut(s) 81, 324, 491, 522, 809
DpnII GATC 5 cut(s) 79, 322, 489, 520, 807
EaeI YGGCCR 2 cut(s) 70, 1004
EagI CGGCCG 1 cut(s) 70
Eam1104I CTCTTC 1 cut(s) 353
EarI CTCTTC 1 cut(s) 353
EciI GGCGGA 1 cut(s) 30
EclXI CGGCCG 1 cut(s) 70
Eco130I CCWWGG 1 cut(s) 759
Eco47I GGWCC 2 cut(s) 448, 651
Eco52I CGGCCG 1 cut(s) 70
Eco57I CTGAAG 1 cut(s) 417
EcoT14I CCWWGG 1 cut(s) 759
ErhI CCWWGG 1 cut(s) 759
FaeI CATG 3 cut(s) 987, 1156, 1221
FalI AAGNNNNNCTT 2 cut(s) 350, 382
FaqI GGGAC 1 cut(s) 875
FatI CATG 3 cut(s) 983, 1152, 1217
FbaI TGATCA 2 cut(s) 79, 807
Fnu4HI GCNGC 6 cut(s) 73, 380, 383, 907, 1004, 1165
FokI GGATG 2 cut(s) 69, 497
Fsp4HI GCNGC 6 cut(s) 73, 380, 383, 907, 1004, 1165
FspBI CTAG 1 cut(s) 1038
GlaI GCGC 1 cut(s) 405
GluI GCNGC 6 cut(s) 73, 380, 383, 907, 1004, 1165
HaeII RGCGCY 1 cut(s) 407
HaeIII GGCC 4 cut(s) 72, 1006, 1087, 1099
HapII CCGG 3 cut(s) 477, 969, 1196
HgaI GACGC 1 cut(s) 112
HhaI GCGC 1 cut(s) 406
Hin1I GRCGYC 1 cut(s) 123
Hin1II CATG 3 cut(s) 987, 1156, 1221
Hin6I GCGC 1 cut(s) 404
HinP1I GCGC 1 cut(s) 404
HinfI GANTC 4 cut(s) 458, 856, 991, 1199
HpaII CCGG 3 cut(s) 477, 969, 1196
HphI GGTGA 4 cut(s) 38, 250, 453, 729
Hpy166II GTNNAC 2 cut(s) 508, 826
Hpy188I TCNGA 4 cut(s) 271, 397, 515, 525
Hpy188III TCNNGA 5 cut(s) 142, 572, 860, 1196, 1210
Hpy8I GTNNAC 2 cut(s) 508, 826
Hpy99I CGWCG 2 cut(s) 538, 541
HpyAV CCTTC 4 cut(s) 163, 196, 211, 637
HpyCH4III ACNGT 5 cut(s) 563, 815, 841, 866, 958
HpyCH4V TGCA 6 cut(s) 382, 418, 503, 1116, 1144, 1164
HpyF10VI GCNNNNNNNGC 6 cut(s) 376, 798, 1003, 1009, 1113, 1129
Hsp92I GRCGYC 1 cut(s) 123
Hsp92II CATG 3 cut(s) 987, 1156, 1221
HspAI GCGC 1 cut(s) 404
Kpn2I TCCGGA 1 cut(s) 1195
Ksp22I TGATCA 2 cut(s) 79, 807
Kzo9I GATC 5 cut(s) 79, 322, 489, 520, 807
LmnI GCTCC 3 cut(s) 299, 1000, 1198
Lsp1109I GCAGC 4 cut(s) 366, 394, 918, 1176
LweI GCATC 4 cut(s) 484, 490, 801, 1203
MaeI CTAG 1 cut(s) 1038
MalI GATC 5 cut(s) 81, 324, 491, 522, 809
MbiI CCGCTC 1 cut(s) 1003
MboI GATC 5 cut(s) 79, 322, 489, 520, 807
MhlI GDGCHC 1 cut(s) 759
MluCI AATT 7 cut(s) 300, 391, 472, 622, 730, 802, 1139
MroI TCCGGA 1 cut(s) 1195
MseI TTAA 5 cut(s) 42, 111, 788, 900, 1128
MspA1I CMGCKG 1 cut(s) 1167
MspI CCGG 3 cut(s) 477, 969, 1196
Mva1269I GAATGC 1 cut(s) 331
MwoI GCNNNNNNNGC 6 cut(s) 376, 798, 1003, 1009, 1113, 1129
NdeII GATC 5 cut(s) 79, 322, 489, 520, 807
NheI GCTAGC 1 cut(s) 1037
NlaIII CATG 3 cut(s) 987, 1156, 1221
NlaIV GGNNCC 3 cut(s) 295, 756, 1058
NmeAIII GCCGAG 1 cut(s) 48
NspI RCATGY 1 cut(s) 987
NspV TTCGAA 2 cut(s) 620, 928
PciI ACATGT 1 cut(s) 983
PctI GAATGC 1 cut(s) 331
PfeI GAWTC 4 cut(s) 458, 856, 991, 1199
PflMI CCANNNNNTGG 1 cut(s) 1094
PkrI GCNGC 6 cut(s) 74, 381, 384, 908, 1005, 1166
PscI ACATGT 1 cut(s) 983
PspN4I GGNNCC 3 cut(s) 295, 756, 1058
PspPI GGNCC 3 cut(s) 448, 651, 1097
PstI CTGCAG 2 cut(s) 384, 1166
PstNI CAGNNNCTG 1 cut(s) 956
RsaI GTAC 5 cut(s) 212, 565, 697, 772, 955
RsaNI GTAC 5 cut(s) 211, 564, 696, 771, 954
SaqAI TTAA 5 cut(s) 42, 111, 788, 900, 1128
SatI GCNGC 6 cut(s) 73, 380, 383, 907, 1004, 1165
Sau3AI GATC 5 cut(s) 79, 322, 489, 520, 807
Sau96I GGNCC 3 cut(s) 448, 651, 1097
ScaI AGTACT 2 cut(s) 697, 772
SduI GDGCHC 1 cut(s) 759
SfaNI GCATC 4 cut(s) 484, 490, 801, 1203
SfcI CTRYAG 3 cut(s) 380, 957, 1162
SfuI TTCGAA 2 cut(s) 620, 928
SinI GGWCC 2 cut(s) 448, 651
Sse9I AATT 7 cut(s) 300, 391, 472, 622, 730, 802, 1139
SsiI CCGC 7 cut(s) 15, 73, 155, 329, 799, 1003, 1167
SspMI CTAG 1 cut(s) 1038
StyI CCWWGG 1 cut(s) 759
TaaI ACNGT 5 cut(s) 563, 815, 841, 866, 958
TaqI TCGA 3 cut(s) 492, 620, 928
TasI AATT 7 cut(s) 300, 391, 472, 622, 730, 802, 1139
TatI WGTACW 3 cut(s) 563, 695, 770
TauI GCSGC 2 cut(s) 75, 1006
TfiI GAWTC 4 cut(s) 458, 856, 991, 1199
Tru1I TTAA 5 cut(s) 42, 111, 788, 900, 1128
Tru9I TTAA 5 cut(s) 42, 111, 788, 900, 1128
TscAI CASTG 1 cut(s) 510
TseI GCWGC 4 cut(s) 379, 382, 906, 1164
TspDTI ATGAA 6 cut(s) 291, 426, 696, 723, 1004, 1169
TspGWI ACGGA 2 cut(s) 461, 1082
TspRI CASTG 1 cut(s) 510
Van91I CCANNNNNTGG 1 cut(s) 1094
VpaK11BI GGWCC 2 cut(s) 448, 651
XapI RAATTY 2 cut(s) 300, 622
XceI RCATGY 1 cut(s) 987
XspI CTAG 1 cut(s) 1038
ZrmI AGTACT 2 cut(s) 697, 772
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.