Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0011632

Physical Location & Seq

Genomic Coordinates Forward (+)

10333626 .. 10336419

Gene Structure 2794 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g11790.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGTATGCTTGCAAATCCATCCCAAAGCGTAAGCTCATTTGCAGAGAAGACTACGATGACGTTTGGCGGGAGATTCAGATCATGCACCACTTGTCTGAACACCCATTTGTGGTTCAGATCAAAGGAACATATGAGGATGCTGTGTTTGTGCATTTGGTCATGGAGCTTTGTGCTGGTGGTGAGTTGTTTGATAGGATTGTTAAAAAGGGTCATTACAGTGAAAGAGAGGCCGCTAAGCTCATAAAGACAATTGTTGGGGTTGTTGAGGCATGTCACTCTCTTGGGGTCATGCACAGGGATCTCAAGCCTGAGAATTTCTTGTTTGATAATCCTTCTGATGATGCCAAGCTCAAAGCCACCGATTTTGGCTTGTCTATCTTCTATAAGCCAGGACAAGTATTTCATGATGTCGTTGGAAGTCCCTATTATGTCGCACCAGAGGTGTTGTCAAAGATTTATGGACCTGAAGTGGATGTGTGGAGTGCTGGCGTTATACTTTACATTCTATTGAGTGGGGTGCCTCCTTTCTGGGCAGAAACTGAAGCAGGGATCTTTCGACAAATTATGCAAGGCAAAATAGACTTTGACTCCGAGCCTTGGCCTAGTATTTCAGAAAGTGCAAAAGATTTGATGCTAAAAATGCTTGAGAGAGACCCAAGAAGAAGAATAACTGCCCATGAAGTCTTATGTCACCCATGGATTGTTGATGATAGGGTTGCCCCAGACAAACCGCTAGACTCTGCAGTTTTATCTCGACTCAAGCAGTTTTCTGCAATGAATAAGCTAAAAAAGATGGCTCTTCGTGTTATTGCAGAAAGACTTTCAGAGGAAGAAATTGGAGGTTTAAAGGAGTTGTTCAAGATGATTGATACTGATAATAGTGGGACAATAACATTTGAGGAACTTAAAGTGGGATTGAAAAAAGTGGGCTCAGACCTAATGGAATCTGAAATCAAGTCTCTTATGGAAGCAGCTGATATAGATAACAGTGGAACAATAGATTATGGTGAATTTCTTGCTGCTACGTTACACATGAATAAGATGGAAAGAGAGGAGAATTTGATTGCAGCCTTTTCCTTTTTTGACAAAGACGCCAGTGGTTACATTACCATTGATGAGCTTCAACAAGCTTGCAAAGACTTCGGTCTAGGTGATGTTCATCTTGATGATATGATCAAAGAAATTGATCAGGATAATGATGGGCGTATTGACTATGGGGAATTTGCTGCAATGATGAGAAAGGGTGGTGATCATGGTACTATAGGGAGGAACAGAACTGCTTCTCGCAATTTTAATTTTAATTTGGCTGATGCTTTCGGAATAAAAGAGTCTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009787 GO:0009789 GO:0009931 GO:0009966 GO:0009967 GO:0009987 GO:0010646 GO:0010647 GO:0010769 GO:0010857 GO:0010959 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0022898 GO:0023051 GO:0023052 GO:0023056 GO:0032409 GO:0032412 GO:0032879 GO:0034762 GO:0034765 GO:0035556 GO:0036211 GO:0040008 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043266 GO:0043269 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045595 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051128 GO:0051239 GO:0051510 GO:0051716 GO:0060284 GO:0065007 GO:0065009 GO:0071704 GO:0071944 GO:0080092 GO:0140096 GO:1901016 GO:1901379 GO:1901419 GO:1901421 GO:1901564 GO:1901979 GO:1904062 GO:1905957 GO:1905959 GO:2000241 GO:2001257

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 Pkinase

Protein Analysis

446

Amino Acids

50.27

Weight (kDa)

5.11

Isoelectric Point (pI)

36.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	1 - 234	1.7e-69	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	16 - 228	3.2e-21	Protein tyrosine and serine/threonine kinase
EF-hand_1	PF00036	282 - 308	6.1e-08	EF hand domain
EF-hand_7	PF13499	282 - 342	2.7e-12	EF-hand domain pair
EF-hand_6	PF13405	282 - 310	2.8e-07	EF-hand domain
EF-hand_5	PF13202	282 - 303	6.7e-06	EF hand
EF-hand_8	PF13833	294 - 341	1.2e-06	EF-hand domain pair
EF-hand_7	PF13499	351 - 413	2.1e-13	EF-hand domain pair
EF-hand_6	PF13405	354 - 382	1.9e-06	EF-hand domain
EF-hand_8	PF13833	366 - 414	5e-06	EF-hand domain pair
EF-hand_1	PF00036	388 - 414	7.9e-08	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0011632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35670 AT4G09570
fragaria_vesca	FvH4_2g11790
malus_domestica	MD05G1041800.v1.1 MD10G1048300.v1.1
prunus_persica	Prupe.8G057600_v2.0.a1
pyrus_communis	pycom10g03420
rosa_chinensis	RchiOBHm_Chr6g0272011
rosa_laevigata	RLG00000013709
rosa_multiflora	Rmu_co8430291.1_g000001 Rmu_sc0014039.1_g000006
rosa_roxburghii	Rroxscaffold_173G00434970 Rroxscaffold_7G00196830
rosa_rugosa	Rorug06G0064900
rosa_samantha	Rh6BG184900 Rh6CG183500 Rh6DG175000
rosa_wichuraiana	Rw0G003460 Rw6G015690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	517
AccI	GTMKAC	1 cut(s)	1331
AciI	CCGC	3 cut(s)	67, 231, 731
AclWI	GGATC	2 cut(s)	306, 557
AcsI	RAATTY	4 cut(s)	313, 1010, 1057, 1220
AcuI	CTGAAG	2 cut(s)	486, 561
AcyI	GRCGYC	1 cut(s)	1092
AfaI	GTAC	1 cut(s)	1258
AfiI	CCNNNNNNNGG	2 cut(s)	109, 597
AgsI	TTSAA	3 cut(s)	859, 919, 1124
AjnI	CCWGG	1 cut(s)	388
AluBI	AGCT	8 cut(s)	34, 166, 238, 349, 784, 974, 1120, 1130
AluI	AGCT	8 cut(s)	34, 166, 238, 349, 784, 974, 1120, 1130
Alw26I	GTCTC	2 cut(s)	645, 963
AlwI	GGATC	2 cut(s)	306, 557
AlwNI	CAGNNNCTG	1 cut(s)	539
AoxI	GGCC	2 cut(s)	228, 599
ApeKI	GCWGC	4 cut(s)	971, 1019, 1067, 1226
ApoI	RAATTY	4 cut(s)	313, 1010, 1057, 1220
Asp700I	GAANNNNTTC	1 cut(s)	1279
AspS9I	GGNCC	1 cut(s)	461
AsuHPI	GGTGA	5 cut(s)	191, 683, 1019, 1163, 1259
AvaII	GGWCC	1 cut(s)	461
BanI	GGYRCC	1 cut(s)	517
BanII	GRGCYC	1 cut(s)	932
BbsI	GAAGAC	1 cut(s)	54
BbvI	GCAGC	4 cut(s)	983, 1006, 1079, 1213
BccI	CCATC	4 cut(s)	26, 787, 1036, 1193
BcgI	CGANNNNNNTGC	2 cut(s)	1123, 1157
BciT130I	CCWGG	1 cut(s)	390
BclI	TGATCA	3 cut(s)	1173, 1186, 1249
BcoDI	GTCTC	2 cut(s)	645, 963
BfaI	CTAG	3 cut(s)	603, 734, 1148
BfmI	CTRYAG	2 cut(s)	741, 1260
BisI	GCNGC	5 cut(s)	231, 972, 1020, 1068, 1227
BlpI	GCTNAGC	1 cut(s)	234
BlsI	GCNGC	5 cut(s)	232, 973, 1021, 1069, 1228
Bme1390I	CCNGG	1 cut(s)	390
Bme18I	GGWCC	1 cut(s)	461
BmgT120I	GGNCC	1 cut(s)	461
BmiI	GGNNCC	1 cut(s)	519
BmrFI	CCNGG	1 cut(s)	390
BmsI	GCATC	4 cut(s)	127, 331, 621, 1300
BoxI	GACNNNNGTC	1 cut(s)	1143
BpiI	GAAGAC	1 cut(s)	54
Bpu1102I	GCTNAGC	1 cut(s)	234
BpuEI	CTTGAG	3 cut(s)	287, 665, 743
BsaBI	GATNNNNATC	2 cut(s)	77, 1158
BsaHI	GRCGYC	1 cut(s)	1092
BsaI	GGTCTC	1 cut(s)	645
BsaJI	CCNNGG	2 cut(s)	596, 695
BsaXI	ACNNNNNCTCC	2 cut(s)	572, 602
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 597
Bse1I	ACTGG	1 cut(s)	1095
Bse3DI	GCAATG	2 cut(s)	780, 1236
Bse8I	GATNNNNATC	2 cut(s)	77, 1158
BseBI	CCWGG	1 cut(s)	390
BseDI	CCNNGG	2 cut(s)	596, 695
BseGI	GGATG	3 cut(s)	18, 142, 478
BseJI	GATNNNNATC	2 cut(s)	77, 1158
BseLI	CCNNNNNNNGG	2 cut(s)	109, 597
BseMI	GCAATG	2 cut(s)	780, 1236
BseMII	CTCAG	2 cut(s)	300, 945
BseNI	ACTGG	1 cut(s)	1095
BseRI	GAGGAG	1 cut(s)	1067
BseXI	GCAGC	4 cut(s)	983, 1006, 1079, 1213
BshFI	GGCC	2 cut(s)	230, 601
BshNI	GGYRCC	1 cut(s)	517
BslFI	GGGAC	2 cut(s)	405, 898
BslI	CCNNNNNNNGG	2 cut(s)	109, 597
BsmAI	GTCTC	2 cut(s)	645, 963
BsmFI	GGGAC	2 cut(s)	405, 898
BsnI	GGCC	2 cut(s)	230, 601
Bso31I	GGTCTC	1 cut(s)	645
Bsp1286I	GDGCHC	1 cut(s)	932
Bsp143I	GATC	7 cut(s)	78, 117, 298, 549, 1173, 1186, 1249
Bsp1720I	GCTNAGC	1 cut(s)	234
Bsp19I	CCATGG	1 cut(s)	695
BspACI	CCGC	3 cut(s)	67, 231, 731
BspANI	GGCC	2 cut(s)	230, 601
BspCNI	CTCAG	2 cut(s)	301, 944
BspHI	TCATGA	1 cut(s)	403
BspLI	GGNNCC	1 cut(s)	519
BspMAI	CTGCAG	1 cut(s)	745
BspPI	GGATC	2 cut(s)	306, 557
BspQI	GCTCTTC	1 cut(s)	804
BspT107I	GGYRCC	1 cut(s)	517
BspTNI	GGTCTC	1 cut(s)	645
BsrDI	GCAATG	2 cut(s)	780, 1236
BsrI	ACTGG	1 cut(s)	1095
BssECI	CCNNGG	2 cut(s)	596, 695
BssMI	GATC	7 cut(s)	78, 117, 298, 549, 1173, 1186, 1249
BssNI	GRCGYC	1 cut(s)	1092
BssT1I	CCWWGG	2 cut(s)	596, 695
Bst2UI	CCWGG	1 cut(s)	390
Bst4CI	ACNGT	2 cut(s)	218, 989
Bst6I	CTCTTC	1 cut(s)	804
BstACI	GRCGYC	1 cut(s)	1092
BstC8I	GCNNGC	3 cut(s)	10, 487, 1132
BstDEI	CTNAG	3 cut(s)	234, 309, 931
BstDSI	CCRYGG	1 cut(s)	695
BstF5I	GGATG	3 cut(s)	18, 142, 478
BstKTI	GATC	7 cut(s)	81, 120, 301, 552, 1176, 1189, 1252
BstMAI	GTCTC	2 cut(s)	645, 963
BstMBI	GATC	7 cut(s)	78, 117, 298, 549, 1173, 1186, 1249
BstMWI	GCNNNNNNNGC	1 cut(s)	640
BstNI	CCWGG	1 cut(s)	390
BstNSI	RCATGY	1 cut(s)	273
BstPAI	GACNNNNGTC	1 cut(s)	1143
BstSCI	CCNGG	1 cut(s)	388
BstSFI	CTRYAG	2 cut(s)	741, 1260
BstV1I	GCAGC	4 cut(s)	983, 1006, 1079, 1213
BstV2I	GAAGAC	1 cut(s)	54
BstX2I	RGATCY	2 cut(s)	298, 549
BstYI	RGATCY	2 cut(s)	298, 549
BsuRI	GGCC	2 cut(s)	230, 601
BtgI	CCRYGG	1 cut(s)	695
BtsCI	GGATG	3 cut(s)	18, 142, 478
BtsIMutI	CAGTG	3 cut(s)	223, 994, 1102
Cac8I	GCNNGC	3 cut(s)	10, 487, 1132
CaiI	CAGNNNCTG	1 cut(s)	539
CciI	TCATGA	1 cut(s)	403
Cfr13I	GGNCC	1 cut(s)	461
CseI	GACGC	1 cut(s)	1100
Csp6I	GTAC	1 cut(s)	1257
CspCI	CAANNNNNGTGG	2 cut(s)	346, 381
CviQI	GTAC	1 cut(s)	1257
DdeI	CTNAG	3 cut(s)	234, 309, 931
DpnI	GATC	7 cut(s)	80, 119, 300, 551, 1175, 1188, 1251
DpnII	GATC	7 cut(s)	78, 117, 298, 549, 1173, 1186, 1249
DraI	TTTAAA	1 cut(s)	846
Eam1104I	CTCTTC	1 cut(s)	804
EarI	CTCTTC	1 cut(s)	804
Eco130I	CCWWGG	2 cut(s)	596, 695
Eco24I	GRGCYC	1 cut(s)	932
Eco31I	GGTCTC	1 cut(s)	645
Eco47I	GGWCC	1 cut(s)	461
Eco57I	CTGAAG	2 cut(s)	486, 561
EcoRII	CCWGG	1 cut(s)	388
EcoT14I	CCWWGG	2 cut(s)	596, 695
EcoT38I	GRGCYC	1 cut(s)	932
ErhI	CCWWGG	2 cut(s)	596, 695
FaqI	GGGAC	2 cut(s)	405, 898
FauI	CCCGC	1 cut(s)	60
FauNDI	CATATG	1 cut(s)	130
FbaI	TGATCA	3 cut(s)	1173, 1186, 1249
FblI	GTMKAC	1 cut(s)	1331
Fnu4HI	GCNGC	5 cut(s)	231, 972, 1020, 1068, 1227
FokI	GGATG	3 cut(s)	5, 149, 485
FriOI	GRGCYC	1 cut(s)	932
Fsp4HI	GCNGC	5 cut(s)	231, 972, 1020, 1068, 1227
FspBI	CTAG	3 cut(s)	603, 734, 1148
GluI	GCNGC	5 cut(s)	231, 972, 1020, 1068, 1227
HaeIII	GGCC	2 cut(s)	230, 601
HgaI	GACGC	1 cut(s)	1100
Hin1I	GRCGYC	1 cut(s)	1092
HindIII	AAGCTT	1 cut(s)	1128
HinfI	GANTC	6 cut(s)	73, 587, 737, 756, 944, 1328
HphI	GGTGA	5 cut(s)	191, 683, 1019, 1163, 1259
Hpy166II	GTNNAC	1 cut(s)	1332
Hpy188III	TCNNGA	5 cut(s)	404, 753, 859, 1163, 1190
Hpy8I	GTNNAC	1 cut(s)	1332
HpyAV	CCTTC	1 cut(s)	342
HpyCH4III	ACNGT	2 cut(s)	218, 989
HpyCH4IV	ACGT	2 cut(s)	60, 1025
HpyF10VI	GCNNNNNNNGC	1 cut(s)	640
HpyF3I	CTNAG	3 cut(s)	234, 309, 931
HpySE526I	ACGT	2 cut(s)	60, 1025
Hsp92I	GRCGYC	1 cut(s)	1092
Ksp22I	TGATCA	3 cut(s)	1173, 1186, 1249
Kzo9I	GATC	7 cut(s)	78, 117, 298, 549, 1173, 1186, 1249
LguI	GCTCTTC	1 cut(s)	804
LmnI	GCTCC	1 cut(s)	163
Lsp1109I	GCAGC	4 cut(s)	983, 1006, 1079, 1213
LweI	GCATC	4 cut(s)	127, 331, 621, 1300
MaeI	CTAG	3 cut(s)	603, 734, 1148
MaeII	ACGT	2 cut(s)	60, 1025
MaeIII	GTNAC	4 cut(s)	272, 689, 1026, 1100
MalI	GATC	7 cut(s)	80, 119, 300, 551, 1175, 1188, 1251
MboI	GATC	7 cut(s)	78, 117, 298, 549, 1173, 1186, 1249
MboII	GAAGA	6 cut(s)	59, 370, 672, 675, 791, 842
MfeI	CAATTG	1 cut(s)	249
MflI	RGATCY	2 cut(s)	298, 549
MhlI	GDGCHC	1 cut(s)	932
MlyI	GAGTC	4 cut(s)	581, 731, 750, 1337
MmeI	TCCRAC	1 cut(s)	394
MroXI	GAANNNNTTC	1 cut(s)	1279
MseI	TTAA	5 cut(s)	201, 845, 906, 1293, 1299
MslI	CAYNNNNRTG	2 cut(s)	216, 1164
MspA1I	CMGCKG	1 cut(s)	974
MspR9I	CCNGG	1 cut(s)	390
MunI	CAATTG	1 cut(s)	249
MvaI	CCWGG	1 cut(s)	390
MwoI	GCNNNNNNNGC	1 cut(s)	640
NcoI	CCATGG	1 cut(s)	695
NdeI	CATATG	1 cut(s)	130
NdeII	GATC	7 cut(s)	78, 117, 298, 549, 1173, 1186, 1249
NlaIV	GGNNCC	1 cut(s)	519
NmuCI	GTSAC	2 cut(s)	272, 689
NspI	RCATGY	1 cut(s)	273
PagI	TCATGA	1 cut(s)	403
PciSI	GCTCTTC	1 cut(s)	804
PdmI	GAANNNNTTC	1 cut(s)	1279
PfeI	GAWTC	2 cut(s)	73, 944
PkrI	GCNGC	5 cut(s)	232, 973, 1021, 1069, 1228
PleI	GAGTC	4 cut(s)	581, 731, 750, 1336
PpsI	GAGTC	4 cut(s)	581, 731, 750, 1336
PshAI	GACNNNNGTC	1 cut(s)	1143
Psp6I	CCWGG	1 cut(s)	388
PspGI	CCWGG	1 cut(s)	388
PspN4I	GGNNCC	1 cut(s)	519
PspPI	GGNCC	1 cut(s)	461
PstI	CTGCAG	1 cut(s)	745
PstNI	CAGNNNCTG	1 cut(s)	539
PsuI	RGATCY	2 cut(s)	298, 549
PvuII	CAGCTG	1 cut(s)	974
RsaI	GTAC	1 cut(s)	1258
RsaNI	GTAC	1 cut(s)	1257
RseI	CAYNNNNRTG	2 cut(s)	216, 1164
SapI	GCTCTTC	1 cut(s)	804
SaqAI	TTAA	5 cut(s)	201, 845, 906, 1293, 1299
SatI	GCNGC	5 cut(s)	231, 972, 1020, 1068, 1227
Sau3AI	GATC	7 cut(s)	78, 117, 298, 549, 1173, 1186, 1249
Sau96I	GGNCC	1 cut(s)	461
SchI	GAGTC	4 cut(s)	581, 731, 750, 1337
ScrFI	CCNGG	1 cut(s)	390
SduI	GDGCHC	1 cut(s)	932
SfaNI	GCATC	4 cut(s)	127, 331, 621, 1300
SfcI	CTRYAG	2 cut(s)	741, 1260
SinI	GGWCC	1 cut(s)	461
SmiMI	CAYNNNNRTG	2 cut(s)	216, 1164
SmlI	CTYRAG	3 cut(s)	302, 644, 758
SmoI	CTYRAG	3 cut(s)	302, 644, 758
SsiI	CCGC	3 cut(s)	67, 231, 731
SspMI	CTAG	3 cut(s)	603, 734, 1148
StyD4I	CCNGG	1 cut(s)	388
StyI	CCWWGG	2 cut(s)	596, 695
TaaI	ACNGT	2 cut(s)	218, 989
TaiI	ACGT	2 cut(s)	63, 1028
TaqI	TCGA	2 cut(s)	556, 754
TaqII	GACCGA	1 cut(s)	1133
TauI	GCSGC	1 cut(s)	233
TfiI	GAWTC	2 cut(s)	73, 944
Tru1I	TTAA	5 cut(s)	201, 845, 906, 1293, 1299
Tru9I	TTAA	5 cut(s)	201, 845, 906, 1293, 1299
TscAI	CASTG	3 cut(s)	223, 994, 1102
TseFI	GTSAC	2 cut(s)	272, 689
TseI	GCWGC	4 cut(s)	971, 1019, 1067, 1226
Tsp45I	GTSAC	2 cut(s)	272, 689
TspDTI	ATGAA	5 cut(s)	392, 693, 791, 1049, 1148
TspRI	CASTG	3 cut(s)	223, 994, 1102
VpaK11BI	GGWCC	1 cut(s)	461
XapI	RAATTY	4 cut(s)	313, 1010, 1057, 1220
XceI	RCATGY	1 cut(s)	273
XmiI	GTMKAC	1 cut(s)	1331
XmnI	GAANNNNTTC	1 cut(s)	1279
XspI	CTAG	3 cut(s)	603, 734, 1148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.