Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0011632

Physical Location & Seq

Genomic Coordinates Forward (+)

33941542 .. 33943490

Gene Structure 1949 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG184900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGAAGAGAGCGGGCGAAGCATCAGCACATTCAAGAAAACTCAGCAATCATACAGTTTTACCGTATGAAACCCCAAAATTGAGAGACCATTACCTGATGGGCAAGAAACTTGGGCAAGGCCAATTCGGAACCACATATCTTTGTACACACAAAACCACAGGGGCATTGTATGCTTGCAAATCCATCCCAAAGCGTAAGCTCATTTGTAGAGAAGACTACGATGACGTTTGGCGAGAGATTCAGATCATGCACCACTTGTCTGAACACCCATTTGTGGTTCAAATCAAAGGAACATATGAGGACGCTGTGTTTGTGCATTTGGTGATGGAGCTTTGCGCTGGTGGTGAGTTATTTGATAGGATTGTTAAGAAGGGCCATTACAGTGAGAGAGAGGCTGCTAAGCTTATAAAGACAATTGTTGGGGTTGTCGAGGCCTGTCACTCTCTTGGTGTCATGCATAGGGATCTCAAACCTGAGAATTTCTTGTTTGATACTCCTTCTGATGATGGCAAGCTCAAAGCGACCGATTTTGGCTTGTCCATCTTCTATAAGCCAGGACAAGTATTTCATGATGTTGTTGGAAGTCCCTATTATGTCGCACCAGAGGTGTTGTCAAAGATTTATGGACCTGAAGTGGATGTCTGGAGTGCTGGTGTTATACTTTACATTCTATTAAGTGGGGTTCCTCCTTTTTGGGCTGAGACTGAAGCAGGAATCTTTCGACAGATTTTACAAGGCAAAATAGATTTTGAATCTGAGCCTTGGCCTAGTATTTCAGAAAGTGCAAAAGATTTGTTGCTAAAGATGCTTGAGAGGGACCCAAGAAAAAGAATAACTGCCCATGAAGTCTTGTGTCACCCATGGATTGTTGATGATAGGGTTGCCCCAGACAAACCGCTAGACTCTGCAGTTTTGTCTCGCCTCAAGCAGTTTTCGGCAATGAATAAATTGAAAAAGATGGCTCTTCGTGTTATAGCAGAAAGACTTTCAGAGGAAGAAATTGGTGGTTTAAAGGAGTTGTTCAAGATGATTGACACGGATAATAGTGGGACAATAACATTTGAGGAACTTAAAGTGGGTTTGAAAAAAGTGGGCTCAGACCTAATGGAATCTGAAATCAAGTCTCTTATGGAAGCAGTTAATAGAGCACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009787 GO:0009789 GO:0009931 GO:0009966 GO:0009967 GO:0009987 GO:0010646 GO:0010647 GO:0010769 GO:0010857 GO:0010959 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0022898 GO:0023051 GO:0023052 GO:0023056 GO:0032409 GO:0032412 GO:0032879 GO:0034762 GO:0034765 GO:0035556 GO:0036211 GO:0040008 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043266 GO:0043269 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045595 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051128 GO:0051239 GO:0051510 GO:0051716 GO:0060284 GO:0065007 GO:0065009 GO:0071704 GO:0071944 GO:0080092 GO:0140096 GO:1901016 GO:1901379 GO:1901419 GO:1901421 GO:1901564 GO:1901979 GO:1904062 GO:1905957 GO:1905959 GO:2000241 GO:2001257

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 Pkinase

Protein Analysis

384

Amino Acids

43.34

Weight (kDa)

6.71

Isoelectric Point (pI)

38.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	33 - 289	1.4e-79	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	33 - 283	6.6e-25	Protein tyrosine and serine/threonine kinase
EF-hand_1	PF00036	337 - 363	5.1e-08	EF hand domain
EF-hand_6	PF13405	337 - 365	2.3e-07	EF-hand domain
EF-hand_5	PF13202	337 - 358	5.6e-06	EF hand

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0011632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35670 AT4G09570
fragaria_vesca	FvH4_2g11790
malus_domestica	MD05G1041800.v1.1 MD10G1048300.v1.1
prunus_persica	Prupe.8G057600_v2.0.a1
pyrus_communis	pycom10g03420
rosa_chinensis	RchiOBHm_Chr6g0272011
rosa_laevigata	RLG00000013709
rosa_multiflora	Rmu_co8430291.1_g000001 Rmu_sc0014039.1_g000006
rosa_roxburghii	Rroxscaffold_173G00434970 Rroxscaffold_7G00196830
rosa_rugosa	Rorug06G0064900
rosa_samantha	Rh6BG184900 Rh6CG183500 Rh6DG175000
rosa_wichuraiana	Rw0G003460 Rw6G015690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	407
AccBSI	CCGCTC	1 cut(s)	11
AciI	CCGC	2 cut(s)	11, 896
AclWI	GGATC	1 cut(s)	471
AcsI	RAATTY	1 cut(s)	478
AcuI	CTGAAG	2 cut(s)	651, 726
AfaI	GTAC	1 cut(s)	145
AfiI	CCNNNNNNNGG	1 cut(s)	274
AgsI	TTSAA	6 cut(s)	33, 281, 752, 952, 1024, 1084
AjnI	CCWGG	1 cut(s)	553
AluBI	AGCT	4 cut(s)	199, 331, 403, 514
AluI	AGCT	4 cut(s)	199, 331, 403, 514
Alw21I	GWGCWC	1 cut(s)	1150
Alw26I	GTCTC	4 cut(s)	78, 695, 921, 1128
AlwI	GGATC	1 cut(s)	471
AoxI	GGCC	4 cut(s)	118, 373, 432, 764
ApeKI	GCWGC	1 cut(s)	395
ApoI	RAATTY	1 cut(s)	478
ArsI	GACNNNNNNTTYG	2 cut(s)	293, 325
AspLEI	GCGC	1 cut(s)	338
AspS9I	GGNCC	3 cut(s)	373, 626, 817
AsuHPI	GGTGA	3 cut(s)	334, 356, 848
AvaII	GGWCC	2 cut(s)	626, 817
BanII	GRGCYC	1 cut(s)	1097
BarI	GAAGNNNNNNTAC	2 cut(s)	362, 394
BbsI	GAAGAC	1 cut(s)	219
Bbv12I	GWGCWC	1 cut(s)	1150
BbvI	GCAGC	1 cut(s)	382
BccI	CCATC	6 cut(s)	91, 191, 319, 500, 548, 952
BciT130I	CCWGG	1 cut(s)	555
BcoDI	GTCTC	4 cut(s)	78, 695, 921, 1128
BfaI	CTAG	2 cut(s)	768, 899
BfmI	CTRYAG	1 cut(s)	906
BisI	GCNGC	1 cut(s)	396
BlpI	GCTNAGC	1 cut(s)	399
BlsI	GCNGC	1 cut(s)	397
Bme1390I	CCNGG	1 cut(s)	555
Bme18I	GGWCC	2 cut(s)	626, 817
BmgT120I	GGNCC	3 cut(s)	373, 626, 817
BmiI	GGNNCC	4 cut(s)	130, 684, 818, 819
BmrFI	CCNGG	1 cut(s)	555
BmsI	GCATC	2 cut(s)	29, 795
BpiI	GAAGAC	1 cut(s)	219
BpmI	CTGGAG	1 cut(s)	664
Bpu1102I	GCTNAGC	1 cut(s)	399
BpuEI	CTTGAG	2 cut(s)	830, 908
BsaBI	GATNNNNATC	1 cut(s)	242
BsaI	GGTCTC	1 cut(s)	78
BsaJI	CCNNGG	2 cut(s)	761, 860
BsaXI	ACNNNNNCTCC	2 cut(s)	637, 667
Bsc4I	CCNNNNNNNGG	1 cut(s)	274
Bse3DI	GCAATG	1 cut(s)	945
Bse8I	GATNNNNATC	1 cut(s)	242
BseBI	CCWGG	1 cut(s)	555
BseDI	CCNNGG	2 cut(s)	761, 860
BseGI	GGATG	2 cut(s)	183, 643
BseJI	GATNNNNATC	1 cut(s)	242
BseLI	CCNNNNNNNGG	1 cut(s)	274
BseMI	GCAATG	1 cut(s)	945
BseMII	CTCAG	5 cut(s)	55, 465, 690, 747, 1110
BseXI	GCAGC	1 cut(s)	382
Bsh1285I	CGRYCG	1 cut(s)	525
BshFI	GGCC	4 cut(s)	120, 375, 434, 766
BsiEI	CGRYCG	1 cut(s)	525
BsiHKAI	GWGCWC	1 cut(s)	1150
BslFI	GGGAC	3 cut(s)	570, 830, 1063
BslI	CCNNNNNNNGG	1 cut(s)	274
BsmAI	GTCTC	4 cut(s)	78, 695, 921, 1128
BsmFI	GGGAC	3 cut(s)	570, 830, 1063
BsnI	GGCC	4 cut(s)	120, 375, 434, 766
Bso31I	GGTCTC	1 cut(s)	78
Bsp1286I	GDGCHC	2 cut(s)	1097, 1150
Bsp1407I	TGTACA	1 cut(s)	143
Bsp143I	GATC	2 cut(s)	243, 463
Bsp1720I	GCTNAGC	1 cut(s)	399
Bsp19I	CCATGG	1 cut(s)	860
BspACI	CCGC	2 cut(s)	11, 896
BspANI	GGCC	4 cut(s)	120, 375, 434, 766
BspCNI	CTCAG	5 cut(s)	54, 466, 691, 748, 1109
BspHI	TCATGA	1 cut(s)	568
BspLI	GGNNCC	4 cut(s)	130, 684, 818, 819
BspMAI	CTGCAG	1 cut(s)	910
BspPI	GGATC	1 cut(s)	471
BspQI	GCTCTTC	1 cut(s)	969
BspTNI	GGTCTC	1 cut(s)	78
BsrBI	CCGCTC	1 cut(s)	11
BsrDI	GCAATG	1 cut(s)	945
BsrGI	TGTACA	1 cut(s)	143
BssECI	CCNNGG	2 cut(s)	761, 860
BssMI	GATC	2 cut(s)	243, 463
BssT1I	CCWWGG	2 cut(s)	761, 860
Bst2UI	CCWGG	1 cut(s)	555
Bst4CI	ACNGT	3 cut(s)	55, 63, 383
Bst6I	CTCTTC	1 cut(s)	969
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstAUI	TGTACA	1 cut(s)	143
BstC8I	GCNNGC	3 cut(s)	13, 175, 512
BstDEI	CTNAG	6 cut(s)	41, 399, 474, 699, 756, 1096
BstDSI	CCRYGG	1 cut(s)	860
BstF5I	GGATG	2 cut(s)	183, 643
BstHHI	GCGC	1 cut(s)	338
BstKTI	GATC	2 cut(s)	246, 466
BstMAI	GTCTC	4 cut(s)	78, 695, 921, 1128
BstMBI	GATC	2 cut(s)	243, 463
BstMCI	CGRYCG	1 cut(s)	525
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 170, 805
BstNI	CCWGG	1 cut(s)	555
BstSCI	CCNGG	1 cut(s)	553
BstSFI	CTRYAG	1 cut(s)	906
BstV1I	GCAGC	1 cut(s)	382
BstV2I	GAAGAC	1 cut(s)	219
BstX2I	RGATCY	1 cut(s)	463
BstYI	RGATCY	1 cut(s)	463
BsuRI	GGCC	4 cut(s)	120, 375, 434, 766
BtgI	CCRYGG	1 cut(s)	860
BtsCI	GGATG	2 cut(s)	183, 643
BtsIMutI	CAGTG	1 cut(s)	388
Cac8I	GCNNGC	3 cut(s)	13, 175, 512
CciI	TCATGA	1 cut(s)	568
CfoI	GCGC	1 cut(s)	338
Cfr13I	GGNCC	3 cut(s)	373, 626, 817
CseI	GACGC	1 cut(s)	311
Csp6I	GTAC	1 cut(s)	144
CviAII	CATG	5 cut(s)	247, 454, 569, 842, 861
CviQI	GTAC	1 cut(s)	144
DdeI	CTNAG	6 cut(s)	41, 399, 474, 699, 756, 1096
DpnI	GATC	2 cut(s)	245, 465
DpnII	GATC	2 cut(s)	243, 463
DraI	TTTAAA	1 cut(s)	1011
Eam1104I	CTCTTC	1 cut(s)	969
EarI	CTCTTC	1 cut(s)	969
Eco130I	CCWWGG	2 cut(s)	761, 860
Eco147I	AGGCCT	1 cut(s)	434
Eco24I	GRGCYC	1 cut(s)	1097
Eco31I	GGTCTC	1 cut(s)	78
Eco47I	GGWCC	2 cut(s)	626, 817
Eco57I	CTGAAG	2 cut(s)	651, 726
EcoO109I	RGGNCCY	1 cut(s)	817
EcoRII	CCWGG	1 cut(s)	553
EcoT14I	CCWWGG	2 cut(s)	761, 860
EcoT22I	ATGCAT	1 cut(s)	459
EcoT38I	GRGCYC	1 cut(s)	1097
ErhI	CCWWGG	2 cut(s)	761, 860
FaeI	CATG	5 cut(s)	250, 457, 572, 845, 864
FaqI	GGGAC	3 cut(s)	570, 830, 1063
FatI	CATG	5 cut(s)	246, 453, 568, 841, 860
FauI	CCCGC	1 cut(s)	4
FauNDI	CATATG	1 cut(s)	295
Fnu4HI	GCNGC	1 cut(s)	396
FokI	GGATG	2 cut(s)	170, 650
FriOI	GRGCYC	1 cut(s)	1097
Fsp4HI	GCNGC	1 cut(s)	396
FspBI	CTAG	2 cut(s)	768, 899
GlaI	GCGC	1 cut(s)	337
GluI	GCNGC	1 cut(s)	396
GsuI	CTGGAG	1 cut(s)	664
HaeIII	GGCC	4 cut(s)	120, 375, 434, 766
HgaI	GACGC	1 cut(s)	311
HhaI	GCGC	1 cut(s)	338
Hin1II	CATG	5 cut(s)	250, 457, 572, 845, 864
Hin6I	GCGC	1 cut(s)	336
HinP1I	GCGC	1 cut(s)	336
HindIII	AAGCTT	1 cut(s)	401
HinfI	GANTC	5 cut(s)	238, 714, 752, 902, 1109
HphI	GGTGA	3 cut(s)	334, 356, 848
Hpy166II	GTNNAC	1 cut(s)	146
Hpy188I	TCNGA	9 cut(s)	128, 243, 262, 502, 757, 778, 991, 1099, 1114
Hpy188III	TCNNGA	4 cut(s)	33, 569, 643, 1024
Hpy8I	GTNNAC	1 cut(s)	146
HpyAV	CCTTC	2 cut(s)	364, 507
HpyCH4III	ACNGT	3 cut(s)	55, 63, 383
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	6 cut(s)	177, 250, 316, 457, 785, 908
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 170, 805
HpyF3I	CTNAG	6 cut(s)	41, 399, 474, 699, 756, 1096
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	5 cut(s)	250, 457, 572, 845, 864
HspAI	GCGC	1 cut(s)	336
KflI	GGGWCCC	1 cut(s)	817
Kzo9I	GATC	2 cut(s)	243, 463
LguI	GCTCTTC	1 cut(s)	969
LmnI	GCTCC	1 cut(s)	328
Lsp1109I	GCAGC	1 cut(s)	382
LweI	GCATC	2 cut(s)	29, 795
MaeI	CTAG	2 cut(s)	768, 899
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	2 cut(s)	437, 854
MalI	GATC	2 cut(s)	245, 465
MbiI	CCGCTC	1 cut(s)	11
MboI	GATC	2 cut(s)	243, 463
MboII	GAAGA	5 cut(s)	16, 224, 535, 956, 1007
MfeI	CAATTG	1 cut(s)	414
MflI	RGATCY	1 cut(s)	463
MhlI	GDGCHC	2 cut(s)	1097, 1150
MluCI	AATT	6 cut(s)	77, 122, 414, 478, 947, 999
MlyI	GAGTC	1 cut(s)	896
MmeI	TCCRAC	1 cut(s)	559
MnlI	CCTC	9 cut(s)	292, 385, 424, 598, 696, 807, 932, 985, 1057
Mph1103I	ATGCAT	1 cut(s)	459
MseI	TTAA	5 cut(s)	366, 674, 1010, 1071, 1140
MslI	CAYNNNNRTG	1 cut(s)	381
MspR9I	CCNGG	1 cut(s)	555
MunI	CAATTG	1 cut(s)	414
MvaI	CCWGG	1 cut(s)	555
MwoI	GCNNNNNNNGC	3 cut(s)	17, 170, 805
NcoI	CCATGG	1 cut(s)	860
NdeI	CATATG	1 cut(s)	295
NdeII	GATC	2 cut(s)	243, 463
NlaIII	CATG	5 cut(s)	250, 457, 572, 845, 864
NlaIV	GGNNCC	4 cut(s)	130, 684, 818, 819
NmuCI	GTSAC	2 cut(s)	437, 854
NsiI	ATGCAT	1 cut(s)	459
PagI	TCATGA	1 cut(s)	568
PceI	AGGCCT	1 cut(s)	434
PciSI	GCTCTTC	1 cut(s)	969
PfeI	GAWTC	4 cut(s)	238, 714, 752, 1109
PkrI	GCNGC	1 cut(s)	397
PleI	GAGTC	1 cut(s)	896
PpsI	GAGTC	1 cut(s)	896
PpuMI	RGGWCCY	1 cut(s)	817
PsiI	TTATAA	1 cut(s)	407
Psp5II	RGGWCCY	1 cut(s)	817
Psp6I	CCWGG	1 cut(s)	553
PspGI	CCWGG	1 cut(s)	553
PspN4I	GGNNCC	4 cut(s)	130, 684, 818, 819
PspPI	GGNCC	3 cut(s)	373, 626, 817
PspPPI	RGGWCCY	1 cut(s)	817
PstI	CTGCAG	1 cut(s)	910
PsuI	RGATCY	1 cut(s)	463
RsaI	GTAC	1 cut(s)	145
RsaNI	GTAC	1 cut(s)	144
RseI	CAYNNNNRTG	1 cut(s)	381
SapI	GCTCTTC	1 cut(s)	969
SaqAI	TTAA	5 cut(s)	366, 674, 1010, 1071, 1140
SatI	GCNGC	1 cut(s)	396
Sau3AI	GATC	2 cut(s)	243, 463
Sau96I	GGNCC	3 cut(s)	373, 626, 817
SchI	GAGTC	1 cut(s)	896
ScrFI	CCNGG	1 cut(s)	555
SduI	GDGCHC	2 cut(s)	1097, 1150
SfaNI	GCATC	2 cut(s)	29, 795
SfcI	CTRYAG	1 cut(s)	906
SinI	GGWCC	2 cut(s)	626, 817
SmiMI	CAYNNNNRTG	1 cut(s)	381
SmlI	CTYRAG	2 cut(s)	809, 923
SmoI	CTYRAG	2 cut(s)	809, 923
Sse9I	AATT	6 cut(s)	77, 122, 414, 478, 947, 999
SseBI	AGGCCT	1 cut(s)	434
SsiI	CCGC	2 cut(s)	11, 896
SspMI	CTAG	2 cut(s)	768, 899
StuI	AGGCCT	1 cut(s)	434
StyD4I	CCNGG	1 cut(s)	553
StyI	CCWWGG	2 cut(s)	761, 860
TaaI	ACNGT	3 cut(s)	55, 63, 383
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	2 cut(s)	429, 721
TaqII	GACCGA	1 cut(s)	539
TasI	AATT	6 cut(s)	77, 122, 414, 478, 947, 999
TatI	WGTACW	1 cut(s)	143
TfiI	GAWTC	4 cut(s)	238, 714, 752, 1109
Tru1I	TTAA	5 cut(s)	366, 674, 1010, 1071, 1140
Tru9I	TTAA	5 cut(s)	366, 674, 1010, 1071, 1140
TscAI	CASTG	1 cut(s)	388
TseFI	GTSAC	2 cut(s)	437, 854
TseI	GCWGC	1 cut(s)	395
Tsp45I	GTSAC	2 cut(s)	437, 854
TspDTI	ATGAA	5 cut(s)	17, 81, 557, 858, 956
TspGWI	ACGGA	1 cut(s)	1052
TspRI	CASTG	1 cut(s)	388
VpaK11BI	GGWCC	2 cut(s)	626, 817
XapI	RAATTY	1 cut(s)	478
XspI	CTAG	2 cut(s)	768, 899
Zsp2I	ATGCAT	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.