Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014039.1

Orthogroup ID

OG0011632

Physical Location & Seq

Genomic Coordinates Reverse (-)

19846 .. 21843

Gene Structure 1998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014039.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

atgggcaagaaacttgggcaaggccaattcggaaccacatatctttgtacacacaaaaccacaggggcattgtatgcttgcaaatccatcccaaagcgtaagctcatttgtagagaagactacgatgatgtttggcgagagattcagatcatgcaccacttgtctgaacacccatttgtggttcaaatcaaaggaacatatgaggacgctgtgtttgtgcatttggtgatggagctttgcgctggtggtgagttgtttgataggattgttaagaagggccattacagtgagagagaggctgctaagcttataaagacaattgttggggttgtcgaggcctgtcactctcttggggtcatgcatagggatctcaaacctgagaatttcttgtttgatactccttctgatgatgccaagctcaaagccaccgattttggcttgtccatcttctataagccaggacaagtatttcatgatgttgttggaagtccctattatgtcgcaccagaggtgttgtcaaagatttatggacctgaggtggatgtctggagtgctggtgttatactttacattctattaagtggggttcctcctttttgggcagaaactgaagcaggaatctttcgacagattttacaaggcaaaatagattttgaatctgagccttggcctagtatttcagaaagtgcaaaagatttgatgctaaagatgcttgagagggacccaagaaaaagaataactgcccatgaagtcttgtgtcacccatggattgttgatgatagggttgccccagacaaaccgctagactctgcagttttgtctcgcctcaagcagttttcggcaatgaataaattgaaaaagatggctcttcgtgttatagcagaaagactttcagaggaagaaattggtggtttaaaggagttgttcaagatgattgacacggataatagtgggacaataacatttgaggaacttaaagtgggtttgaaaaaagtgggctcagacctaatggaatctgaaatcaagtctcttatggaagcagctgatatagacaacagtggaacaatagattatggggaatttcttgctgctacgttacaaacagtggaacaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009787 GO:0009789 GO:0009931 GO:0009966 GO:0009967 GO:0009987 GO:0010646 GO:0010647 GO:0010769 GO:0010857 GO:0010959 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0022898 GO:0023051 GO:0023052 GO:0023056 GO:0032409 GO:0032412 GO:0032879 GO:0034762 GO:0034765 GO:0035556 GO:0036211 GO:0040008 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043266 GO:0043269 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045595 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051128 GO:0051239 GO:0051510 GO:0051716 GO:0060284 GO:0065007 GO:0065009 GO:0071704 GO:0071944 GO:0080092 GO:0140096 GO:1901016 GO:1901379 GO:1901419 GO:1901421 GO:1901564 GO:1901979 GO:1904062 GO:1905957 GO:1905959 GO:2000241 GO:2001257

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 Pkinase

Protein Analysis

371

Amino Acids

41.7

Weight (kDa)

5.55

Isoelectric Point (pI)

37.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35670 AT4G09570
fragaria_vesca	FvH4_2g11790
malus_domestica	MD05G1041800.v1.1 MD10G1048300.v1.1
prunus_persica	Prupe.8G057600_v2.0.a1
pyrus_communis	pycom10g03420
rosa_chinensis	RchiOBHm_Chr6g0272011
rosa_laevigata	RLG00000013709
rosa_multiflora	Rmu_co8430291.1_g000001 Rmu_sc0014039.1_g000006
rosa_roxburghii	Rroxscaffold_173G00434970 Rroxscaffold_7G00196830
rosa_rugosa	Rorug06G0064900
rosa_samantha	Rh6BG184900 Rh6CG183500 Rh6DG175000
rosa_wichuraiana	Rw0G003460 Rw6G015690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	311
AciI	CCGC	1 cut(s)	800
AclWI	GGATC	1 cut(s)	375
AcsI	RAATTY	2 cut(s)	382, 1079
AcuI	CTGAAG	1 cut(s)	630
AfaI	GTAC	1 cut(s)	49
AfiI	CCNNNNNNNGG	1 cut(s)	178
AgsI	TTSAA	5 cut(s)	185, 656, 856, 928, 988
AjnI	CCWGG	1 cut(s)	457
AluBI	AGCT	5 cut(s)	103, 235, 307, 418, 1043
AluI	AGCT	5 cut(s)	103, 235, 307, 418, 1043
Alw26I	GTCTC	2 cut(s)	825, 1032
AlwI	GGATC	1 cut(s)	375
AlwNI	CAGNNNCTG	1 cut(s)	608
AoxI	GGCC	4 cut(s)	22, 277, 336, 668
ApeKI	GCWGC	3 cut(s)	299, 1040, 1088
ApoI	RAATTY	2 cut(s)	382, 1079
ArsI	GACNNNNNNTTYG	2 cut(s)	197, 229
AspLEI	GCGC	1 cut(s)	242
AspS9I	GGNCC	3 cut(s)	277, 530, 721
AsuHPI	GGTGA	3 cut(s)	238, 260, 752
AvaII	GGWCC	2 cut(s)	530, 721
AxyI	CCTNAGG	1 cut(s)	534
BanII	GRGCYC	1 cut(s)	1001
BarI	GAAGNNNNNNTAC	2 cut(s)	266, 298
BbsI	GAAGAC	1 cut(s)	123
BbvI	GCAGC	3 cut(s)	286, 1052, 1075
BccI	CCATC	4 cut(s)	95, 223, 452, 856
BciT130I	CCWGG	1 cut(s)	459
BcoDI	GTCTC	2 cut(s)	825, 1032
BfaI	CTAG	2 cut(s)	672, 803
BfmI	CTRYAG	1 cut(s)	810
BisI	GCNGC	3 cut(s)	300, 1041, 1089
BlpI	GCTNAGC	1 cut(s)	303
BlsI	GCNGC	3 cut(s)	301, 1042, 1090
Bme1390I	CCNGG	1 cut(s)	459
Bme18I	GGWCC	2 cut(s)	530, 721
BmgT120I	GGNCC	3 cut(s)	277, 530, 721
BmiI	GGNNCC	4 cut(s)	34, 588, 722, 723
BmrFI	CCNGG	1 cut(s)	459
BmsI	GCATC	3 cut(s)	400, 690, 699
BpiI	GAAGAC	1 cut(s)	123
BpmI	CTGGAG	1 cut(s)	568
Bpu1102I	GCTNAGC	1 cut(s)	303
BpuEI	CTTGAG	2 cut(s)	734, 812
BsaBI	GATNNNNATC	1 cut(s)	146
BsaJI	CCNNGG	2 cut(s)	665, 764
BsaXI	ACNNNNNCTCC	2 cut(s)	541, 571
Bsc4I	CCNNNNNNNGG	1 cut(s)	178
Bse21I	CCTNAGG	1 cut(s)	534
Bse3DI	GCAATG	1 cut(s)	849
Bse8I	GATNNNNATC	1 cut(s)	146
BseBI	CCWGG	1 cut(s)	459
BseDI	CCNNGG	2 cut(s)	665, 764
BseGI	GGATG	2 cut(s)	87, 547
BseJI	GATNNNNATC	1 cut(s)	146
BseLI	CCNNNNNNNGG	1 cut(s)	178
BseMI	GCAATG	1 cut(s)	849
BseMII	CTCAG	4 cut(s)	369, 525, 651, 1014
BseXI	GCAGC	3 cut(s)	286, 1052, 1075
BshFI	GGCC	4 cut(s)	24, 279, 338, 670
BslFI	GGGAC	3 cut(s)	474, 734, 967
BslI	CCNNNNNNNGG	1 cut(s)	178
BsmAI	GTCTC	2 cut(s)	825, 1032
BsmFI	GGGAC	3 cut(s)	474, 734, 967
BsnI	GGCC	4 cut(s)	24, 279, 338, 670
Bsp1286I	GDGCHC	1 cut(s)	1001
Bsp1407I	TGTACA	1 cut(s)	47
Bsp143I	GATC	2 cut(s)	147, 367
Bsp1720I	GCTNAGC	1 cut(s)	303
Bsp19I	CCATGG	1 cut(s)	764
BspACI	CCGC	1 cut(s)	800
BspANI	GGCC	4 cut(s)	24, 279, 338, 670
BspCNI	CTCAG	4 cut(s)	370, 526, 652, 1013
BspHI	TCATGA	1 cut(s)	472
BspLI	GGNNCC	4 cut(s)	34, 588, 722, 723
BspMAI	CTGCAG	1 cut(s)	814
BspPI	GGATC	1 cut(s)	375
BspQI	GCTCTTC	1 cut(s)	873
BsrDI	GCAATG	1 cut(s)	849
BsrGI	TGTACA	1 cut(s)	47
BssECI	CCNNGG	2 cut(s)	665, 764
BssMI	GATC	2 cut(s)	147, 367
BssT1I	CCWWGG	2 cut(s)	665, 764
Bst2UI	CCWGG	1 cut(s)	459
Bst4CI	ACNGT	3 cut(s)	287, 1058, 1105
Bst6I	CTCTTC	1 cut(s)	873
BstAPI	GCANNNNNTGC	1 cut(s)	74
BstAUI	TGTACA	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	79
BstDEI	CTNAG	5 cut(s)	303, 378, 534, 660, 1000
BstDSI	CCRYGG	1 cut(s)	764
BstF5I	GGATG	2 cut(s)	87, 547
BstHHI	GCGC	1 cut(s)	242
BstKTI	GATC	2 cut(s)	150, 370
BstMAI	GTCTC	2 cut(s)	825, 1032
BstMBI	GATC	2 cut(s)	147, 367
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 709
BstNI	CCWGG	1 cut(s)	459
BstSCI	CCNGG	1 cut(s)	457
BstSFI	CTRYAG	1 cut(s)	810
BstV1I	GCAGC	3 cut(s)	286, 1052, 1075
BstV2I	GAAGAC	1 cut(s)	123
BstX2I	RGATCY	1 cut(s)	367
BstYI	RGATCY	1 cut(s)	367
Bsu36I	CCTNAGG	1 cut(s)	534
BsuRI	GGCC	4 cut(s)	24, 279, 338, 670
BtgI	CCRYGG	1 cut(s)	764
BtsCI	GGATG	2 cut(s)	87, 547
BtsIMutI	CAGTG	3 cut(s)	292, 1063, 1110
Cac8I	GCNNGC	1 cut(s)	79
CaiI	CAGNNNCTG	1 cut(s)	608
CciI	TCATGA	1 cut(s)	472
CfoI	GCGC	1 cut(s)	242
Cfr13I	GGNCC	3 cut(s)	277, 530, 721
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	1 cut(s)	48
CspCI	CAANNNNNGTGG	2 cut(s)	415, 450
CviAII	CATG	5 cut(s)	151, 358, 473, 746, 765
CviQI	GTAC	1 cut(s)	48
DdeI	CTNAG	5 cut(s)	303, 378, 534, 660, 1000
DpnI	GATC	2 cut(s)	149, 369
DpnII	GATC	2 cut(s)	147, 367
DraI	TTTAAA	1 cut(s)	915
Eam1104I	CTCTTC	1 cut(s)	873
EarI	CTCTTC	1 cut(s)	873
Eco130I	CCWWGG	2 cut(s)	665, 764
Eco147I	AGGCCT	1 cut(s)	338
Eco24I	GRGCYC	1 cut(s)	1001
Eco47I	GGWCC	2 cut(s)	530, 721
Eco57I	CTGAAG	1 cut(s)	630
Eco81I	CCTNAGG	1 cut(s)	534
EcoO109I	RGGNCCY	1 cut(s)	721
EcoRII	CCWGG	1 cut(s)	457
EcoT14I	CCWWGG	2 cut(s)	665, 764
EcoT22I	ATGCAT	1 cut(s)	363
EcoT38I	GRGCYC	1 cut(s)	1001
ErhI	CCWWGG	2 cut(s)	665, 764
FaeI	CATG	5 cut(s)	154, 361, 476, 749, 768
FaqI	GGGAC	3 cut(s)	474, 734, 967
FatI	CATG	5 cut(s)	150, 357, 472, 745, 764
FauNDI	CATATG	1 cut(s)	199
Fnu4HI	GCNGC	3 cut(s)	300, 1041, 1089
FokI	GGATG	2 cut(s)	74, 554
FriOI	GRGCYC	1 cut(s)	1001
Fsp4HI	GCNGC	3 cut(s)	300, 1041, 1089
FspBI	CTAG	2 cut(s)	672, 803
GlaI	GCGC	1 cut(s)	241
GluI	GCNGC	3 cut(s)	300, 1041, 1089
GsuI	CTGGAG	1 cut(s)	568
HaeIII	GGCC	4 cut(s)	24, 279, 338, 670
HgaI	GACGC	1 cut(s)	215
HhaI	GCGC	1 cut(s)	242
Hin1II	CATG	5 cut(s)	154, 361, 476, 749, 768
Hin6I	GCGC	1 cut(s)	240
HinP1I	GCGC	1 cut(s)	240
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	5 cut(s)	142, 618, 656, 806, 1013
HphI	GGTGA	3 cut(s)	238, 260, 752
Hpy166II	GTNNAC	1 cut(s)	50
Hpy188I	TCNGA	9 cut(s)	32, 147, 166, 406, 661, 682, 895, 1003, 1018
Hpy188III	TCNNGA	3 cut(s)	473, 547, 928
Hpy8I	GTNNAC	1 cut(s)	50
HpyAV	CCTTC	2 cut(s)	268, 411
HpyCH4III	ACNGT	3 cut(s)	287, 1058, 1105
HpyCH4IV	ACGT	1 cut(s)	1094
HpyCH4V	TGCA	6 cut(s)	81, 154, 220, 361, 689, 812
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 709
HpyF3I	CTNAG	5 cut(s)	303, 378, 534, 660, 1000
HpySE526I	ACGT	1 cut(s)	1094
Hsp92II	CATG	5 cut(s)	154, 361, 476, 749, 768
HspAI	GCGC	1 cut(s)	240
KflI	GGGWCCC	1 cut(s)	721
Kzo9I	GATC	2 cut(s)	147, 367
LguI	GCTCTTC	1 cut(s)	873
LmnI	GCTCC	1 cut(s)	232
Lsp1109I	GCAGC	3 cut(s)	286, 1052, 1075
LweI	GCATC	3 cut(s)	400, 690, 699
MaeI	CTAG	2 cut(s)	672, 803
MaeII	ACGT	1 cut(s)	1094
MaeIII	GTNAC	3 cut(s)	341, 758, 1095
MalI	GATC	2 cut(s)	149, 369
MboI	GATC	2 cut(s)	147, 367
MboII	GAAGA	4 cut(s)	128, 439, 860, 911
MfeI	CAATTG	1 cut(s)	318
MflI	RGATCY	1 cut(s)	367
MhlI	GDGCHC	1 cut(s)	1001
MluCI	AATT	6 cut(s)	26, 318, 382, 851, 903, 1079
MlyI	GAGTC	1 cut(s)	800
MmeI	TCCRAC	1 cut(s)	463
Mph1103I	ATGCAT	1 cut(s)	363
MseI	TTAA	4 cut(s)	270, 578, 914, 975
MslI	CAYNNNNRTG	1 cut(s)	285
MspA1I	CMGCKG	1 cut(s)	1043
MspR9I	CCNGG	1 cut(s)	459
MunI	CAATTG	1 cut(s)	318
MvaI	CCWGG	1 cut(s)	459
MwoI	GCNNNNNNNGC	2 cut(s)	74, 709
NcoI	CCATGG	1 cut(s)	764
NdeI	CATATG	1 cut(s)	199
NdeII	GATC	2 cut(s)	147, 367
NlaIII	CATG	5 cut(s)	154, 361, 476, 749, 768
NlaIV	GGNNCC	4 cut(s)	34, 588, 722, 723
NmuCI	GTSAC	2 cut(s)	341, 758
NsiI	ATGCAT	1 cut(s)	363
PagI	TCATGA	1 cut(s)	472
PceI	AGGCCT	1 cut(s)	338
PciSI	GCTCTTC	1 cut(s)	873
PfeI	GAWTC	4 cut(s)	142, 618, 656, 1013
PkrI	GCNGC	3 cut(s)	301, 1042, 1090
PleI	GAGTC	1 cut(s)	800
PpsI	GAGTC	1 cut(s)	800
PpuMI	RGGWCCY	1 cut(s)	721
PsiI	TTATAA	1 cut(s)	311
Psp5II	RGGWCCY	1 cut(s)	721
Psp6I	CCWGG	1 cut(s)	457
PspGI	CCWGG	1 cut(s)	457
PspN4I	GGNNCC	4 cut(s)	34, 588, 722, 723
PspPI	GGNCC	3 cut(s)	277, 530, 721
PspPPI	RGGWCCY	1 cut(s)	721
PstI	CTGCAG	1 cut(s)	814
PstNI	CAGNNNCTG	1 cut(s)	608
PsuI	RGATCY	1 cut(s)	367
PvuII	CAGCTG	1 cut(s)	1043
RsaI	GTAC	1 cut(s)	49
RsaNI	GTAC	1 cut(s)	48
RseI	CAYNNNNRTG	1 cut(s)	285
SapI	GCTCTTC	1 cut(s)	873
SaqAI	TTAA	4 cut(s)	270, 578, 914, 975
SatI	GCNGC	3 cut(s)	300, 1041, 1089
Sau3AI	GATC	2 cut(s)	147, 367
Sau96I	GGNCC	3 cut(s)	277, 530, 721
SchI	GAGTC	1 cut(s)	800
ScrFI	CCNGG	1 cut(s)	459
SduI	GDGCHC	1 cut(s)	1001
SfaNI	GCATC	3 cut(s)	400, 690, 699
SfcI	CTRYAG	1 cut(s)	810
SinI	GGWCC	2 cut(s)	530, 721
SmiMI	CAYNNNNRTG	1 cut(s)	285
SmlI	CTYRAG	2 cut(s)	713, 827
SmoI	CTYRAG	2 cut(s)	713, 827
Sse9I	AATT	6 cut(s)	26, 318, 382, 851, 903, 1079
SseBI	AGGCCT	1 cut(s)	338
SsiI	CCGC	1 cut(s)	800
SspMI	CTAG	2 cut(s)	672, 803
StuI	AGGCCT	1 cut(s)	338
StyD4I	CCNGG	1 cut(s)	457
StyI	CCWWGG	2 cut(s)	665, 764
TaaI	ACNGT	3 cut(s)	287, 1058, 1105
TaiI	ACGT	1 cut(s)	1097
TaqI	TCGA	2 cut(s)	333, 625
TasI	AATT	6 cut(s)	26, 318, 382, 851, 903, 1079
TatI	WGTACW	1 cut(s)	47
TfiI	GAWTC	4 cut(s)	142, 618, 656, 1013
Tru1I	TTAA	4 cut(s)	270, 578, 914, 975
Tru9I	TTAA	4 cut(s)	270, 578, 914, 975
TscAI	CASTG	3 cut(s)	292, 1063, 1110
TseFI	GTSAC	2 cut(s)	341, 758
TseI	GCWGC	3 cut(s)	299, 1040, 1088
Tsp45I	GTSAC	2 cut(s)	341, 758
TspDTI	ATGAA	3 cut(s)	461, 762, 860
TspGWI	ACGGA	1 cut(s)	956
TspRI	CASTG	3 cut(s)	292, 1063, 1110
VpaK11BI	GGWCC	2 cut(s)	530, 721
XapI	RAATTY	2 cut(s)	382, 1079
XspI	CTAG	2 cut(s)	672, 803
Zsp2I	ATGCAT	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.