Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0011632

Physical Location & Seq

Genomic Coordinates Forward (+)

8612875 .. 8613537

Gene Structure 663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0064900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGTTACTGCTGCCTCAAGGCCCCAAAGGCAGCAGCAAGTGCTTGAGAGGAAAGAAGTCAAGTTAAAGCTTCCTAAGGAAGTTCGAGGAAGCTGGATTTATGGGTCTTCTAAAGGTTGGTTGATCATGGTCAAGGAAAAAGGATTACAGTCTACGATGTGTCTACTTAACCCAATTTCAGGAGCCCTACACAAACTTCCGCCGTTGAGGACAATTCCATCTTTCAAAACGATTGTAAAAACGAGGCAATGGAAACGTTTTGGTGCCAATATTTTCCTCTTGTATGTTGCATTACTTACCCCTCATGATCTTAATTCTTCAGGCCATTTTACGGTAGCCATAATCTTTGAGGATTTCAAGGGCCAGAAGACATTGGGTTTATGCAAACTTGAAGACCTAACATGGAGTCTCTTCCGGGTATTCGACAACAACGACCGCCTTGAGCTTGTGGGTATACTGTTTTCTCGAGGCATTCTGTATGCTTTAGTCAATAGTCAAAAGGATGGCTTGGTAGCAGCTACTCGTATTTTAAACTTTGCAGATCATGAAGTGAAGTTGAAATTGATTCACGACAAGCATGAACACAAGAATGTGAGAGTTGATGATTTTAATAGTGACTATCTAAGAGTTTCCAATGCAAACTATCGATCAATATTGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009787 GO:0009789 GO:0009931 GO:0009966 GO:0009967 GO:0009987 GO:0010646 GO:0010647 GO:0010769 GO:0010857 GO:0010959 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0022898 GO:0023051 GO:0023052 GO:0023056 GO:0032409 GO:0032412 GO:0032879 GO:0034762 GO:0034765 GO:0035556 GO:0036211 GO:0040008 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043266 GO:0043269 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045595 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051128 GO:0051239 GO:0051510 GO:0051716 GO:0060284 GO:0065007 GO:0065009 GO:0071704 GO:0071944 GO:0080092 GO:0140096 GO:1901016 GO:1901379 GO:1901419 GO:1901421 GO:1901564 GO:1901979 GO:1904062 GO:1905957 GO:1905959 GO:2000241 GO:2001257

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 Pkinase

Protein Analysis

220

Amino Acids

25.23

Weight (kDa)

9.86

Isoelectric Point (pI)

29.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	18 - 168	6.1e-15	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35670 AT4G09570
fragaria_vesca	FvH4_2g11790
malus_domestica	MD05G1041800.v1.1 MD10G1048300.v1.1
prunus_persica	Prupe.8G057600_v2.0.a1
pyrus_communis	pycom10g03420
rosa_chinensis	RchiOBHm_Chr6g0272011
rosa_laevigata	RLG00000013709
rosa_multiflora	Rmu_co8430291.1_g000001 Rmu_sc0014039.1_g000006
rosa_roxburghii	Rroxscaffold_173G00434970 Rroxscaffold_7G00196830
rosa_rugosa	Rorug06G0064900
rosa_samantha	Rh6BG184900 Rh6CG183500 Rh6DG175000
rosa_wichuraiana	Rw0G003460 Rw6G015690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	263
AccI	GTMKAC	3 cut(s)	152, 163, 454
AciI	CCGC	2 cut(s)	200, 436
AclI	AACGTT	1 cut(s)	256
AcuI	CTGAAG	1 cut(s)	303
AfiI	CCNNNNNNNGG	2 cut(s)	179, 331
AgsI	TTSAA	4 cut(s)	226, 358, 392, 559
AluBI	AGCT	4 cut(s)	70, 93, 445, 518
AluI	AGCT	4 cut(s)	70, 93, 445, 518
Alw26I	GTCTC	1 cut(s)	413
Ama87I	CYCGRG	1 cut(s)	465
AoxI	GGCC	3 cut(s)	20, 322, 361
ApeKI	GCWGC	4 cut(s)	11, 31, 34, 515
AspS9I	GGNCC	2 cut(s)	21, 361
AsuC2I	CCSGG	1 cut(s)	416
AvaI	CYCGRG	1 cut(s)	465
AxyI	CCTNAGG	1 cut(s)	75
BanI	GGYRCC	1 cut(s)	263
BanII	GRGCYC	1 cut(s)	187
BbsI	GAAGAC	3 cut(s)	99, 374, 399
BbvI	GCAGC	3 cut(s)	43, 46, 527
BccI	CCATC	2 cut(s)	226, 497
BceAI	ACGGC	1 cut(s)	187
BclI	TGATCA	1 cut(s)	123
BcnI	CCSGG	1 cut(s)	416
BcoDI	GTCTC	1 cut(s)	413
BglI	GCCNNNNNGGC	1 cut(s)	28
BisI	GCNGC	4 cut(s)	12, 32, 35, 516
BlsI	GCNGC	4 cut(s)	13, 33, 36, 517
Bme1390I	CCNGG	1 cut(s)	416
BmeT110I	CYCGRG	1 cut(s)	465
BmgT120I	GGNCC	2 cut(s)	21, 361
BmiI	GGNNCC	3 cut(s)	23, 184, 265
BmrFI	CCNGG	1 cut(s)	416
BpiI	GAAGAC	3 cut(s)	99, 374, 399
BpuEI	CTTGAG	2 cut(s)	65, 461
BpuMI	CCSGG	1 cut(s)	416
Bsa29I	ATCGAT	1 cut(s)	646
Bsc4I	CCNNNNNNNGG	2 cut(s)	179, 331
Bse21I	CCTNAGG	1 cut(s)	75
Bse3DI	GCAATG	1 cut(s)	254
BseCI	ATCGAT	1 cut(s)	646
BseGI	GGATG	1 cut(s)	508
BseLI	CCNNNNNNNGG	2 cut(s)	179, 331
BseMI	GCAATG	1 cut(s)	254
BseXI	GCAGC	3 cut(s)	43, 46, 527
Bsh1285I	CGRYCG	1 cut(s)	436
BshFI	GGCC	3 cut(s)	22, 324, 363
BshNI	GGYRCC	1 cut(s)	263
BshVI	ATCGAT	1 cut(s)	646
BsiEI	CGRYCG	1 cut(s)	436
BsiHKCI	CYCGRG	1 cut(s)	465
BsiSI	CCGG	1 cut(s)	415
BslI	CCNNNNNNNGG	2 cut(s)	179, 331
BsmAI	GTCTC	1 cut(s)	413
BsmI	GAATGC	1 cut(s)	471
BsnI	GGCC	3 cut(s)	22, 324, 363
BsoBI	CYCGRG	1 cut(s)	465
Bsp1286I	GDGCHC	1 cut(s)	187
Bsp143I	GATC	4 cut(s)	123, 307, 541, 647
BspACI	CCGC	2 cut(s)	200, 436
BspANI	GGCC	3 cut(s)	22, 324, 363
BspDI	ATCGAT	1 cut(s)	646
BspHI	TCATGA	2 cut(s)	304, 544
BspLI	GGNNCC	3 cut(s)	23, 184, 265
BspT107I	GGYRCC	1 cut(s)	263
BsrDI	GCAATG	1 cut(s)	254
BssMI	GATC	4 cut(s)	123, 307, 541, 647
BssNAI	GTATAC	1 cut(s)	455
Bst1107I	GTATAC	1 cut(s)	455
Bst4CI	ACNGT	3 cut(s)	150, 334, 459
Bst6I	CTCTTC	1 cut(s)	416
BstAPI	GCANNNNNTGC	1 cut(s)	40
BstDEI	CTNAG	2 cut(s)	75, 623
BstF5I	GGATG	1 cut(s)	508
BstKTI	GATC	4 cut(s)	126, 310, 544, 650
BstMAI	GTCTC	1 cut(s)	413
BstMBI	GATC	4 cut(s)	123, 307, 541, 647
BstMCI	CGRYCG	1 cut(s)	436
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 40
BstSCI	CCNGG	1 cut(s)	414
BstV1I	GCAGC	3 cut(s)	43, 46, 527
BstV2I	GAAGAC	3 cut(s)	99, 374, 399
BstZ17I	GTATAC	1 cut(s)	455
Bsu15I	ATCGAT	1 cut(s)	646
Bsu36I	CCTNAGG	1 cut(s)	75
BsuRI	GGCC	3 cut(s)	22, 324, 363
BsuTUI	ATCGAT	1 cut(s)	646
BtsCI	GGATG	1 cut(s)	508
CciI	TCATGA	2 cut(s)	304, 544
Cfr13I	GGNCC	2 cut(s)	21, 361
ClaI	ATCGAT	1 cut(s)	646
CviAII	CATG	5 cut(s)	127, 305, 402, 545, 578
DdeI	CTNAG	2 cut(s)	75, 623
DpnI	GATC	4 cut(s)	125, 309, 543, 649
DpnII	GATC	4 cut(s)	123, 307, 541, 647
DraI	TTTAAA	1 cut(s)	531
Eam1104I	CTCTTC	1 cut(s)	416
EarI	CTCTTC	1 cut(s)	416
EciI	GGCGGA	1 cut(s)	189
Eco24I	GRGCYC	1 cut(s)	187
Eco57I	CTGAAG	1 cut(s)	303
Eco81I	CCTNAGG	1 cut(s)	75
Eco88I	CYCGRG	1 cut(s)	465
EcoO109I	RGGNCCY	1 cut(s)	21
EcoT38I	GRGCYC	1 cut(s)	187
FaeI	CATG	5 cut(s)	130, 308, 405, 548, 581
FalI	AAGNNNNNCTT	2 cut(s)	491, 523
FatI	CATG	5 cut(s)	126, 304, 401, 544, 577
FbaI	TGATCA	1 cut(s)	123
FblI	GTMKAC	3 cut(s)	152, 163, 454
Fnu4HI	GCNGC	4 cut(s)	12, 32, 35, 516
FokI	GGATG	1 cut(s)	515
FriOI	GRGCYC	1 cut(s)	187
Fsp4HI	GCNGC	4 cut(s)	12, 32, 35, 516
GluI	GCNGC	4 cut(s)	12, 32, 35, 516
HaeIII	GGCC	3 cut(s)	22, 324, 363
HapII	CCGG	1 cut(s)	415
Hin1II	CATG	5 cut(s)	130, 308, 405, 548, 581
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	2 cut(s)	406, 565
HpaII	CCGG	1 cut(s)	415
Hpy166II	GTNNAC	3 cut(s)	153, 164, 455
Hpy188III	TCNNGA	5 cut(s)	180, 305, 465, 545, 569
Hpy8I	GTNNAC	3 cut(s)	153, 164, 455
HpyCH4III	ACNGT	3 cut(s)	150, 334, 459
HpyCH4IV	ACGT	1 cut(s)	256
HpyCH4V	TGCA	4 cut(s)	290, 384, 539, 638
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 40
HpyF3I	CTNAG	2 cut(s)	75, 623
HpySE526I	ACGT	1 cut(s)	256
Hsp92II	CATG	5 cut(s)	130, 308, 405, 548, 581
Ksp22I	TGATCA	1 cut(s)	123
Kzo9I	GATC	4 cut(s)	123, 307, 541, 647
LmnI	GCTCC	1 cut(s)	182
LpnPI	CCDG	5 cut(s)	79, 165, 306, 377, 428
Lsp1109I	GCAGC	3 cut(s)	43, 46, 527
MaeII	ACGT	1 cut(s)	256
MaeIII	GTNAC	2 cut(s)	4, 614
MalI	GATC	4 cut(s)	125, 309, 543, 649
MboI	GATC	4 cut(s)	123, 307, 541, 647
MboII	GAAGA	5 cut(s)	99, 309, 379, 403, 404
MhlI	GDGCHC	1 cut(s)	187
MluCI	AATT	4 cut(s)	174, 213, 313, 560
MlyI	GAGTC	1 cut(s)	415
MnlI	CCTC	9 cut(s)	25, 42, 80, 201, 237, 287, 312, 343, 461
MseI	TTAA	5 cut(s)	65, 168, 312, 530, 609
MslI	CAYNNNNRTG	1 cut(s)	588
MspI	CCGG	1 cut(s)	415
MspR9I	CCNGG	1 cut(s)	416
Mva1269I	GAATGC	1 cut(s)	471
MwoI	GCNNNNNNNGC	2 cut(s)	28, 40
NciI	CCSGG	1 cut(s)	416
NdeII	GATC	4 cut(s)	123, 307, 541, 647
NlaIII	CATG	5 cut(s)	130, 308, 405, 548, 581
NlaIV	GGNNCC	3 cut(s)	23, 184, 265
NmuCI	GTSAC	1 cut(s)	614
PaeR7I	CTCGAG	1 cut(s)	465
PagI	TCATGA	2 cut(s)	304, 544
PcsI	WCGNNNNNNNCGW	1 cut(s)	429
PctI	GAATGC	1 cut(s)	471
PfeI	GAWTC	1 cut(s)	565
PkrI	GCNGC	4 cut(s)	13, 33, 36, 517
PleI	GAGTC	1 cut(s)	414
PpsI	GAGTC	1 cut(s)	414
Psp1406I	AACGTT	1 cut(s)	256
PspN4I	GGNNCC	3 cut(s)	23, 184, 265
PspPI	GGNCC	2 cut(s)	21, 361
RseI	CAYNNNNRTG	1 cut(s)	588
SaqAI	TTAA	5 cut(s)	65, 168, 312, 530, 609
SatI	GCNGC	4 cut(s)	12, 32, 35, 516
Sau3AI	GATC	4 cut(s)	123, 307, 541, 647
Sau96I	GGNCC	2 cut(s)	21, 361
SchI	GAGTC	1 cut(s)	415
ScrFI	CCNGG	1 cut(s)	416
SduI	GDGCHC	1 cut(s)	187
SetI	ASST	7 cut(s)	72, 95, 118, 259, 399, 447, 520
Sfr274I	CTCGAG	1 cut(s)	465
SlaI	CTCGAG	1 cut(s)	465
SmiMI	CAYNNNNRTG	1 cut(s)	588
SmlI	CTYRAG	4 cut(s)	16, 44, 440, 465
SmoI	CTYRAG	4 cut(s)	16, 44, 440, 465
Sse9I	AATT	4 cut(s)	174, 213, 313, 560
SsiI	CCGC	2 cut(s)	200, 436
SspI	AATATT	2 cut(s)	271, 654
StyD4I	CCNGG	1 cut(s)	414
TaaI	ACNGT	3 cut(s)	150, 334, 459
TaiI	ACGT	1 cut(s)	259
TaqI	TCGA	4 cut(s)	85, 423, 466, 646
TasI	AATT	4 cut(s)	174, 213, 313, 560
TfiI	GAWTC	1 cut(s)	565
Tru1I	TTAA	5 cut(s)	65, 168, 312, 530, 609
Tru9I	TTAA	5 cut(s)	65, 168, 312, 530, 609
TseFI	GTSAC	1 cut(s)	614
TseI	GCWGC	4 cut(s)	11, 31, 34, 515
Tsp45I	GTSAC	1 cut(s)	614
TspDTI	ATGAA	2 cut(s)	561, 594
XhoI	CTCGAG	1 cut(s)	465
XmiI	GTMKAC	3 cut(s)	152, 163, 454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.