Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8430291.1

Orthogroup ID

OG0011632

Physical Location & Seq

Genomic Coordinates Reverse (-)

42 .. 1016

Gene Structure 975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8430291.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

atgggcaagaaacttgggcaaggccaattcggaaccacatatctttgtacacacaaaaccacaggggcattgtatgcttgcaaatccatcccaaagcgtaagctcatttgtagagaagactacgatgatgtttggcgagagattcagatcatgcaccacttgtctgaacacccatttgtggttcaaatcaaaggaacatatgaggacgctgtgtttgtgcatttggtgatggagctttgcgctggtggtgagttgtttgataggattgttaagaagggccattacagtgagagagaggctgctaagcttataaagacaattgttggggttgtcgaggcctgtcactctcttggggtcatgcatagggatctcaaacctgagaatttcttgtttgatactccttctgatgatgccaagctcaaagccaccgattttggcttgtccatcttctataagccaggacaagtatttcatgatgttgttggaagtccctattatgtcgcaccagaggtgttgtcaaagatttatggacctgaggtggatgtctggagtgctggtgttatactttacattctattaagtggggttcctcctttttgggcaggtagttatcttgatgagtcacaactttacgatacaaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009787 GO:0009789 GO:0009931 GO:0009966 GO:0009967 GO:0009987 GO:0010646 GO:0010647 GO:0010769 GO:0010857 GO:0010959 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0022898 GO:0023051 GO:0023052 GO:0023056 GO:0032409 GO:0032412 GO:0032879 GO:0034762 GO:0034765 GO:0035556 GO:0036211 GO:0040008 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043266 GO:0043269 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045595 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051128 GO:0051239 GO:0051510 GO:0051716 GO:0060284 GO:0065007 GO:0065009 GO:0071704 GO:0071944 GO:0080092 GO:0140096 GO:1901016 GO:1901379 GO:1901419 GO:1901421 GO:1901564 GO:1901979 GO:1904062 GO:1905957 GO:1905959 GO:2000241 GO:2001257

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 Pkinase

Protein Analysis

214

Amino Acids

24.07

Weight (kDa)

5.97

Isoelectric Point (pI)

36.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35670 AT4G09570
fragaria_vesca	FvH4_2g11790
malus_domestica	MD05G1041800.v1.1 MD10G1048300.v1.1
prunus_persica	Prupe.8G057600_v2.0.a1
pyrus_communis	pycom10g03420
rosa_chinensis	RchiOBHm_Chr6g0272011
rosa_laevigata	RLG00000013709
rosa_multiflora	Rmu_co8430291.1_g000001 Rmu_sc0014039.1_g000006
rosa_roxburghii	Rroxscaffold_173G00434970 Rroxscaffold_7G00196830
rosa_rugosa	Rorug06G0064900
rosa_samantha	Rh6BG184900 Rh6CG183500 Rh6DG175000
rosa_wichuraiana	Rw0G003460 Rw6G015690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	311
Acc36I	ACCTGC	1 cut(s)	593
AclWI	GGATC	1 cut(s)	375
AcsI	RAATTY	1 cut(s)	382
AfaI	GTAC	1 cut(s)	49
AfiI	CCNNNNNNNGG	1 cut(s)	178
AgsI	TTSAA	1 cut(s)	185
AjnI	CCWGG	1 cut(s)	457
AluBI	AGCT	4 cut(s)	103, 235, 307, 418
AluI	AGCT	4 cut(s)	103, 235, 307, 418
AlwI	GGATC	1 cut(s)	375
AoxI	GGCC	3 cut(s)	22, 277, 336
ApeKI	GCWGC	1 cut(s)	299
ApoI	RAATTY	1 cut(s)	382
ArsI	GACNNNNNNTTYG	2 cut(s)	197, 229
AspLEI	GCGC	1 cut(s)	242
AspS9I	GGNCC	2 cut(s)	277, 530
AsuHPI	GGTGA	2 cut(s)	238, 260
AvaII	GGWCC	1 cut(s)	530
AxyI	CCTNAGG	1 cut(s)	534
BarI	GAAGNNNNNNTAC	2 cut(s)	266, 298
BbsI	GAAGAC	1 cut(s)	123
BbvI	GCAGC	1 cut(s)	286
BccI	CCATC	3 cut(s)	95, 223, 452
BciT130I	CCWGG	1 cut(s)	459
BfuAI	ACCTGC	1 cut(s)	593
BisI	GCNGC	1 cut(s)	300
BlpI	GCTNAGC	1 cut(s)	303
BlsI	GCNGC	1 cut(s)	301
Bme1390I	CCNGG	1 cut(s)	459
Bme18I	GGWCC	1 cut(s)	530
BmgT120I	GGNCC	2 cut(s)	277, 530
BmiI	GGNNCC	2 cut(s)	34, 588
BmrFI	CCNGG	1 cut(s)	459
BmsI	GCATC	1 cut(s)	400
BpiI	GAAGAC	1 cut(s)	123
BpmI	CTGGAG	1 cut(s)	568
Bpu1102I	GCTNAGC	1 cut(s)	303
BsaBI	GATNNNNATC	1 cut(s)	146
BsaXI	ACNNNNNCTCC	2 cut(s)	541, 571
Bsc4I	CCNNNNNNNGG	1 cut(s)	178
Bse21I	CCTNAGG	1 cut(s)	534
Bse8I	GATNNNNATC	1 cut(s)	146
BseBI	CCWGG	1 cut(s)	459
BseGI	GGATG	2 cut(s)	87, 547
BseJI	GATNNNNATC	1 cut(s)	146
BseLI	CCNNNNNNNGG	1 cut(s)	178
BseMII	CTCAG	2 cut(s)	369, 525
BseXI	GCAGC	1 cut(s)	286
BshFI	GGCC	3 cut(s)	24, 279, 338
BslFI	GGGAC	1 cut(s)	474
BslI	CCNNNNNNNGG	1 cut(s)	178
BsmFI	GGGAC	1 cut(s)	474
BsnI	GGCC	3 cut(s)	24, 279, 338
Bsp1407I	TGTACA	1 cut(s)	47
Bsp143I	GATC	2 cut(s)	147, 367
Bsp1720I	GCTNAGC	1 cut(s)	303
BspANI	GGCC	3 cut(s)	24, 279, 338
BspCNI	CTCAG	2 cut(s)	370, 526
BspHI	TCATGA	1 cut(s)	472
BspLI	GGNNCC	2 cut(s)	34, 588
BspMI	ACCTGC	1 cut(s)	593
BspPI	GGATC	1 cut(s)	375
BsrGI	TGTACA	1 cut(s)	47
BssMI	GATC	2 cut(s)	147, 367
Bst2UI	CCWGG	1 cut(s)	459
Bst4CI	ACNGT	1 cut(s)	287
BstAPI	GCANNNNNTGC	1 cut(s)	74
BstAUI	TGTACA	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	79
BstDEI	CTNAG	3 cut(s)	303, 378, 534
BstF5I	GGATG	2 cut(s)	87, 547
BstHHI	GCGC	1 cut(s)	242
BstKTI	GATC	2 cut(s)	150, 370
BstMBI	GATC	2 cut(s)	147, 367
BstMWI	GCNNNNNNNGC	1 cut(s)	74
BstNI	CCWGG	1 cut(s)	459
BstSCI	CCNGG	1 cut(s)	457
BstV1I	GCAGC	1 cut(s)	286
BstV2I	GAAGAC	1 cut(s)	123
BstX2I	RGATCY	1 cut(s)	367
BstYI	RGATCY	1 cut(s)	367
Bsu36I	CCTNAGG	1 cut(s)	534
BsuRI	GGCC	3 cut(s)	24, 279, 338
BtsCI	GGATG	2 cut(s)	87, 547
BtsIMutI	CAGTG	1 cut(s)	292
BveI	ACCTGC	1 cut(s)	593
Cac8I	GCNNGC	1 cut(s)	79
CciI	TCATGA	1 cut(s)	472
CfoI	GCGC	1 cut(s)	242
Cfr13I	GGNCC	2 cut(s)	277, 530
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	1 cut(s)	48
CspCI	CAANNNNNGTGG	2 cut(s)	415, 450
CviAII	CATG	3 cut(s)	151, 358, 473
CviQI	GTAC	1 cut(s)	48
DdeI	CTNAG	3 cut(s)	303, 378, 534
DpnI	GATC	2 cut(s)	149, 369
DpnII	GATC	2 cut(s)	147, 367
Eco147I	AGGCCT	1 cut(s)	338
Eco47I	GGWCC	1 cut(s)	530
Eco81I	CCTNAGG	1 cut(s)	534
EcoRII	CCWGG	1 cut(s)	457
EcoT22I	ATGCAT	1 cut(s)	363
FaeI	CATG	3 cut(s)	154, 361, 476
FaqI	GGGAC	1 cut(s)	474
FatI	CATG	3 cut(s)	150, 357, 472
FauNDI	CATATG	1 cut(s)	199
Fnu4HI	GCNGC	1 cut(s)	300
FokI	GGATG	2 cut(s)	74, 554
Fsp4HI	GCNGC	1 cut(s)	300
GlaI	GCGC	1 cut(s)	241
GluI	GCNGC	1 cut(s)	300
GsuI	CTGGAG	1 cut(s)	568
HaeIII	GGCC	3 cut(s)	24, 279, 338
HgaI	GACGC	1 cut(s)	215
HhaI	GCGC	1 cut(s)	242
Hin1II	CATG	3 cut(s)	154, 361, 476
Hin6I	GCGC	1 cut(s)	240
HinP1I	GCGC	1 cut(s)	240
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	2 cut(s)	142, 620
HphI	GGTGA	2 cut(s)	238, 260
Hpy166II	GTNNAC	1 cut(s)	50
Hpy188I	TCNGA	4 cut(s)	32, 147, 166, 406
Hpy188III	TCNNGA	3 cut(s)	473, 547, 614
Hpy8I	GTNNAC	1 cut(s)	50
HpyAV	CCTTC	2 cut(s)	268, 411
HpyCH4III	ACNGT	1 cut(s)	287
HpyCH4V	TGCA	4 cut(s)	81, 154, 220, 361
HpyF10VI	GCNNNNNNNGC	1 cut(s)	74
HpyF3I	CTNAG	3 cut(s)	303, 378, 534
Hsp92II	CATG	3 cut(s)	154, 361, 476
HspAI	GCGC	1 cut(s)	240
Kzo9I	GATC	2 cut(s)	147, 367
LmnI	GCTCC	1 cut(s)	232
Lsp1109I	GCAGC	1 cut(s)	286
LweI	GCATC	1 cut(s)	400
MaeIII	GTNAC	2 cut(s)	341, 621
MalI	GATC	2 cut(s)	149, 369
MboI	GATC	2 cut(s)	147, 367
MboII	GAAGA	2 cut(s)	128, 439
MfeI	CAATTG	1 cut(s)	318
MflI	RGATCY	1 cut(s)	367
MluCI	AATT	3 cut(s)	26, 318, 382
MlyI	GAGTC	1 cut(s)	629
MmeI	TCCRAC	1 cut(s)	463
MnlI	CCTC	6 cut(s)	196, 289, 328, 502, 529, 600
Mph1103I	ATGCAT	1 cut(s)	363
MseI	TTAA	2 cut(s)	270, 578
MslI	CAYNNNNRTG	1 cut(s)	285
MspR9I	CCNGG	1 cut(s)	459
MunI	CAATTG	1 cut(s)	318
MvaI	CCWGG	1 cut(s)	459
MwoI	GCNNNNNNNGC	1 cut(s)	74
NdeI	CATATG	1 cut(s)	199
NdeII	GATC	2 cut(s)	147, 367
NlaIII	CATG	3 cut(s)	154, 361, 476
NlaIV	GGNNCC	2 cut(s)	34, 588
NmuCI	GTSAC	2 cut(s)	341, 621
NsiI	ATGCAT	1 cut(s)	363
PagI	TCATGA	1 cut(s)	472
PceI	AGGCCT	1 cut(s)	338
PfeI	GAWTC	1 cut(s)	142
PkrI	GCNGC	1 cut(s)	301
PleI	GAGTC	1 cut(s)	628
PpsI	GAGTC	1 cut(s)	628
PsiI	TTATAA	1 cut(s)	311
Psp6I	CCWGG	1 cut(s)	457
PspGI	CCWGG	1 cut(s)	457
PspN4I	GGNNCC	2 cut(s)	34, 588
PspPI	GGNCC	2 cut(s)	277, 530
PsuI	RGATCY	1 cut(s)	367
RsaI	GTAC	1 cut(s)	49
RsaNI	GTAC	1 cut(s)	48
RseI	CAYNNNNRTG	1 cut(s)	285
SaqAI	TTAA	2 cut(s)	270, 578
SatI	GCNGC	1 cut(s)	300
Sau3AI	GATC	2 cut(s)	147, 367
Sau96I	GGNCC	2 cut(s)	277, 530
SchI	GAGTC	1 cut(s)	629
ScrFI	CCNGG	1 cut(s)	459
SetI	ASST	9 cut(s)	105, 237, 309, 379, 420, 513, 535, 540, 607
SfaNI	GCATC	1 cut(s)	400
SinI	GGWCC	1 cut(s)	530
SmiMI	CAYNNNNRTG	1 cut(s)	285
Sse9I	AATT	3 cut(s)	26, 318, 382
SseBI	AGGCCT	1 cut(s)	338
StuI	AGGCCT	1 cut(s)	338
StyD4I	CCNGG	1 cut(s)	457
TaaI	ACNGT	1 cut(s)	287
TaqI	TCGA	1 cut(s)	333
TasI	AATT	3 cut(s)	26, 318, 382
TatI	WGTACW	1 cut(s)	47
TfiI	GAWTC	1 cut(s)	142
Tru1I	TTAA	2 cut(s)	270, 578
Tru9I	TTAA	2 cut(s)	270, 578
TscAI	CASTG	1 cut(s)	292
TseFI	GTSAC	2 cut(s)	341, 621
TseI	GCWGC	1 cut(s)	299
Tsp45I	GTSAC	2 cut(s)	341, 621
TspDTI	ATGAA	1 cut(s)	461
TspRI	CASTG	1 cut(s)	292
VpaK11BI	GGWCC	1 cut(s)	530
XapI	RAATTY	1 cut(s)	382
Zsp2I	ATGCAT	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.