Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0011632

Physical Location & Seq

Genomic Coordinates Forward (+)

3729301 .. 3729645

Gene Structure 345 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g03420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGAAGAAAGGATTGCATTCCCAAGCAGGGAAGCTTCACACAGTACTGCCGTACGAAACGCCGCGACTCAGAGACCATTACCTCATGGGCAAGAAATTGGGCCAAGGCCAATTCGGCACCACCTACCTCTGCACCCACAAGCCCACCGGCGCCCAGTTCGCCTGCAAGTCCATCCCCAAGCGCAAGCTCCTCTGCCAGGAGGACTACGACGACGTCTGGAGGGAGATTCAGATCGATGCACCACCTCTCCGAGCACCCCAGCGTCGTCCAGATCAAGGGCACCTACGAGGACTCCGTCTTCGTGCACCTCGTCATGGAGCTCTGCGCCGGCGGGGAGCTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009787 GO:0009789 GO:0009931 GO:0009966 GO:0009967 GO:0009987 GO:0010646 GO:0010647 GO:0010769 GO:0010857 GO:0010959 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0022898 GO:0023051 GO:0023052 GO:0023056 GO:0032409 GO:0032412 GO:0032879 GO:0034762 GO:0034765 GO:0035556 GO:0036211 GO:0040008 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043266 GO:0043269 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045595 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051128 GO:0051239 GO:0051510 GO:0051716 GO:0060284 GO:0065007 GO:0065009 GO:0071704 GO:0071944 GO:0080092 GO:0140096 GO:1901016 GO:1901379 GO:1901419 GO:1901421 GO:1901564 GO:1901979 GO:1904062 GO:1905957 GO:1905959 GO:2000241 GO:2001257

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 Pkinase

Protein Analysis

115

Amino Acids

13.08

Weight (kDa)

10.47

Isoelectric Point (pI)

56.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	29 - 78	1.7e-08	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0011632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35670 AT4G09570
fragaria_vesca	FvH4_2g11790
malus_domestica	MD05G1041800.v1.1 MD10G1048300.v1.1
prunus_persica	Prupe.8G057600_v2.0.a1
pyrus_communis	pycom10g03420
rosa_chinensis	RchiOBHm_Chr6g0272011
rosa_laevigata	RLG00000013709
rosa_multiflora	Rmu_co8430291.1_g000001 Rmu_sc0014039.1_g000006
rosa_roxburghii	Rroxscaffold_173G00434970 Rroxscaffold_7G00196830
rosa_rugosa	Rorug06G0064900
rosa_samantha	Rh6BG184900 Rh6CG183500 Rh6DG175000
rosa_wichuraiana	Rw0G003460 Rw6G015690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	216
AccB1I	GGYRCC	3 cut(s)	116, 149, 279
AccII	CGCG	1 cut(s)	64
AciI	CCGC	2 cut(s)	62, 331
AcyI	GRCGYC	2 cut(s)	150, 213
AfaI	GTAC	2 cut(s)	45, 53
AfiI	CCNNNNNNNGG	4 cut(s)	27, 196, 275, 314
AjnI	CCWGG	1 cut(s)	195
AluBI	AGCT	4 cut(s)	34, 187, 320, 338
AluI	AGCT	4 cut(s)	34, 187, 320, 338
Alw21I	GWGCWC	4 cut(s)	256, 307, 322, 340
Alw26I	GTCTC	1 cut(s)	66
Alw44I	GTGCAC	1 cut(s)	303
AoxI	GGCC	2 cut(s)	100, 106
ApaLI	GTGCAC	1 cut(s)	303
ArsI	GACNNNNNNTTYG	2 cut(s)	282, 314
AspLEI	GCGC	3 cut(s)	152, 183, 327
AspS9I	GGNCC	1 cut(s)	100
BaeGI	GKGCMC	2 cut(s)	282, 307
BanI	GGYRCC	3 cut(s)	116, 149, 279
BanII	GRGCYC	2 cut(s)	322, 340
BbsI	GAAGAC	1 cut(s)	290
Bbv12I	GWGCWC	4 cut(s)	256, 307, 322, 340
BccI	CCATC	1 cut(s)	179
BceAI	ACGGC	1 cut(s)	34
BciT130I	CCWGG	1 cut(s)	197
BcoDI	GTCTC	1 cut(s)	66
BfoI	RGCGCY	1 cut(s)	153
BglI	GCCNNNNNGGC	1 cut(s)	114
BisI	GCNGC	1 cut(s)	62
BlsI	GCNGC	1 cut(s)	63
BmcAI	AGTACT	1 cut(s)	45
Bme1390I	CCNGG	1 cut(s)	197
BmgT120I	GGNCC	1 cut(s)	100
BmiI	GGNNCC	3 cut(s)	118, 151, 281
BmrFI	CCNGG	1 cut(s)	197
BmrI	ACTGGG	1 cut(s)	148
BmsI	GCATC	1 cut(s)	226
BmuI	ACTGGG	1 cut(s)	148
BpiI	GAAGAC	1 cut(s)	290
BpmI	CTGGAG	1 cut(s)	238
Bsa29I	ATCGAT	1 cut(s)	234
BsaBI	GATNNNNATC	1 cut(s)	230
BsaHI	GRCGYC	2 cut(s)	150, 213
BsaI	GGTCTC	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	103
BsaXI	ACNNNNNCTCC	4 cut(s)	231, 261, 276, 306
Bsc4I	CCNNNNNNNGG	4 cut(s)	27, 196, 275, 314
Bse118I	RCCGGY	2 cut(s)	146, 327
Bse1I	ACTGG	1 cut(s)	154
Bse8I	GATNNNNATC	1 cut(s)	230
BseBI	CCWGG	1 cut(s)	197
BseCI	ATCGAT	1 cut(s)	234
BseDI	CCNNGG	1 cut(s)	103
BseGI	GGATG	1 cut(s)	171
BseJI	GATNNNNATC	1 cut(s)	230
BseLI	CCNNNNNNNGG	4 cut(s)	27, 196, 275, 314
BseMII	CTCAG	1 cut(s)	82
BseNI	ACTGG	1 cut(s)	154
BseRI	GAGGAG	1 cut(s)	179
BseSI	GKGCMC	2 cut(s)	282, 307
BseYI	CCCAGC	1 cut(s)	258
BsgI	GTGCAG	1 cut(s)	115
Bsh1236I	CGCG	1 cut(s)	64
BshFI	GGCC	2 cut(s)	102, 108
BshNI	GGYRCC	3 cut(s)	116, 149, 279
BshVI	ATCGAT	1 cut(s)	234
BsiHKAI	GWGCWC	4 cut(s)	256, 307, 322, 340
BsiSI	CCGG	2 cut(s)	147, 328
BsiWI	CGTACG	1 cut(s)	51
BslI	CCNNNNNNNGG	4 cut(s)	27, 196, 275, 314
BsmAI	GTCTC	1 cut(s)	66
BsmI	GAATGC	1 cut(s)	16
BsnI	GGCC	2 cut(s)	102, 108
Bso31I	GGTCTC	1 cut(s)	66
Bsp1286I	GDGCHC	5 cut(s)	256, 282, 307, 322, 340
Bsp143I	GATC	2 cut(s)	231, 271
BspACI	CCGC	2 cut(s)	62, 331
BspANI	GGCC	2 cut(s)	102, 108
BspCNI	CTCAG	1 cut(s)	81
BspDI	ATCGAT	1 cut(s)	234
BspFNI	CGCG	1 cut(s)	64
BspLI	GGNNCC	3 cut(s)	118, 151, 281
BspT107I	GGYRCC	3 cut(s)	116, 149, 279
BspTNI	GGTCTC	1 cut(s)	66
BsrFI	RCCGGY	2 cut(s)	146, 327
BsrI	ACTGG	1 cut(s)	154
BssAI	RCCGGY	2 cut(s)	146, 327
BssECI	CCNNGG	1 cut(s)	103
BssMI	GATC	2 cut(s)	231, 271
BssNI	GRCGYC	2 cut(s)	150, 213
BssT1I	CCWWGG	1 cut(s)	103
Bst2UI	CCWGG	1 cut(s)	197
Bst4CI	ACNGT	1 cut(s)	43
BstACI	GRCGYC	2 cut(s)	150, 213
BstC8I	GCNNGC	3 cut(s)	163, 185, 329
BstDEI	CTNAG	1 cut(s)	68
BstENI	CCTNNNNNAGG	1 cut(s)	194
BstF5I	GGATG	1 cut(s)	171
BstFNI	CGCG	1 cut(s)	64
BstH2I	RGCGCY	1 cut(s)	153
BstHHI	GCGC	3 cut(s)	152, 183, 327
BstKTI	GATC	2 cut(s)	234, 274
BstMAI	GTCTC	1 cut(s)	66
BstMBI	GATC	2 cut(s)	231, 271
BstMWI	GCNNNNNNNGC	2 cut(s)	114, 158
BstNI	CCWGG	1 cut(s)	197
BstSCI	CCNGG	1 cut(s)	195
BstSLI	GKGCMC	2 cut(s)	282, 307
BstUI	CGCG	1 cut(s)	64
BstV2I	GAAGAC	1 cut(s)	290
Bsu15I	ATCGAT	1 cut(s)	234
BsuRI	GGCC	2 cut(s)	102, 108
BsuTUI	ATCGAT	1 cut(s)	234
BtsCI	GGATG	1 cut(s)	171
Cac8I	GCNNGC	3 cut(s)	163, 185, 329
CfoI	GCGC	3 cut(s)	152, 183, 327
Cfr10I	RCCGGY	2 cut(s)	146, 327
Cfr13I	GGNCC	1 cut(s)	100
ClaI	ATCGAT	1 cut(s)	234
CseI	GACGC	1 cut(s)	251
Csp6I	GTAC	2 cut(s)	44, 52
CviAII	CATG	2 cut(s)	85, 314
CviJI	RGCY	7 cut(s)	34, 102, 108, 142, 187, 320, 338
CviKI_1	RGCY	7 cut(s)	34, 102, 108, 142, 187, 320, 338
CviQI	GTAC	2 cut(s)	44, 52
DdeI	CTNAG	1 cut(s)	68
DinI	GGCGCC	1 cut(s)	151
DpnI	GATC	2 cut(s)	233, 273
DpnII	GATC	2 cut(s)	231, 271
Ecl136II	GAGCTC	2 cut(s)	320, 338
Eco130I	CCWWGG	1 cut(s)	103
Eco24I	GRGCYC	2 cut(s)	322, 340
Eco31I	GGTCTC	1 cut(s)	66
Eco53kI	GAGCTC	2 cut(s)	320, 338
EcoICRI	GAGCTC	2 cut(s)	320, 338
EcoNI	CCTNNNNNAGG	1 cut(s)	194
EcoRII	CCWGG	1 cut(s)	195
EcoT14I	CCWWGG	1 cut(s)	103
EcoT38I	GRGCYC	2 cut(s)	322, 340
EgeI	GGCGCC	1 cut(s)	151
EheI	GGCGCC	1 cut(s)	151
ErhI	CCWWGG	1 cut(s)	103
FaeI	CATG	2 cut(s)	88, 317
FaiI	YATR	2 cut(s)	86, 315
FatI	CATG	2 cut(s)	84, 313
FauI	CCCGC	1 cut(s)	324
Fnu4HI	GCNGC	1 cut(s)	62
FokI	GGATG	1 cut(s)	158
FriOI	GRGCYC	2 cut(s)	322, 340
Fsp4HI	GCNGC	1 cut(s)	62
GlaI	GCGC	3 cut(s)	151, 182, 326
GluI	GCNGC	1 cut(s)	62
GsaI	CCCAGC	1 cut(s)	262
GsuI	CTGGAG	1 cut(s)	238
HaeII	RGCGCY	1 cut(s)	153
HaeIII	GGCC	2 cut(s)	102, 108
HapII	CCGG	2 cut(s)	147, 328
HgaI	GACGC	1 cut(s)	251
HhaI	GCGC	3 cut(s)	152, 183, 327
Hin1I	GRCGYC	2 cut(s)	150, 213
Hin1II	CATG	2 cut(s)	88, 317
Hin6I	GCGC	3 cut(s)	150, 181, 325
HinP1I	GCGC	3 cut(s)	150, 181, 325
HindIII	AAGCTT	1 cut(s)	32
HinfI	GANTC	3 cut(s)	66, 226, 291
HpaII	CCGG	2 cut(s)	147, 328
Hpy166II	GTNNAC	1 cut(s)	305
Hpy188I	TCNGA	3 cut(s)	71, 231, 251
Hpy188III	TCNNGA	2 cut(s)	217, 269
Hpy8I	GTNNAC	1 cut(s)	305
Hpy99I	CGWCG	3 cut(s)	212, 215, 267
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	5 cut(s)	16, 132, 165, 239, 305
HpyF10VI	GCNNNNNNNGC	2 cut(s)	114, 158
HpyF3I	CTNAG	1 cut(s)	68
HpySE526I	ACGT	1 cut(s)	213
Hsp92I	GRCGYC	2 cut(s)	150, 213
Hsp92II	CATG	2 cut(s)	88, 317
HspAI	GCGC	3 cut(s)	150, 181, 325
KasI	GGCGCC	1 cut(s)	149
KroI	GCCGGC	1 cut(s)	327
KroNI	GCCGGC	1 cut(s)	329
Kzo9I	GATC	2 cut(s)	231, 271
LmnI	GCTCC	3 cut(s)	192, 317, 335
LweI	GCATC	1 cut(s)	226
MaeII	ACGT	1 cut(s)	213
MalI	GATC	2 cut(s)	233, 273
MboI	GATC	2 cut(s)	231, 271
MboII	GAAGA	2 cut(s)	16, 290
MhlI	GDGCHC	5 cut(s)	256, 282, 307, 322, 340
MluCI	AATT	2 cut(s)	95, 110
Mly113I	GGCGCC	1 cut(s)	150
MlyI	GAGTC	2 cut(s)	60, 285
MnlI	CCTC	8 cut(s)	92, 137, 193, 200, 213, 255, 281, 318
MreI	CGCCGGCG	1 cut(s)	327
MroNI	GCCGGC	1 cut(s)	327
MspI	CCGG	2 cut(s)	147, 328
MspR9I	CCNGG	1 cut(s)	197
Mva1269I	GAATGC	1 cut(s)	16
MvaI	CCWGG	1 cut(s)	197
MvnI	CGCG	1 cut(s)	64
MwoI	GCNNNNNNNGC	2 cut(s)	114, 158
NaeI	GCCGGC	1 cut(s)	329
NarI	GGCGCC	1 cut(s)	150
NdeII	GATC	2 cut(s)	231, 271
NgoMIV	GCCGGC	1 cut(s)	327
NlaIII	CATG	2 cut(s)	88, 317
NlaIV	GGNNCC	3 cut(s)	118, 151, 281
PcsI	WCGNNNNNNNCGW	2 cut(s)	292, 307
PctI	GAATGC	1 cut(s)	16
PdiI	GCCGGC	1 cut(s)	329
PfeI	GAWTC	1 cut(s)	226
Pfl23II	CGTACG	1 cut(s)	51
PflFI	GACNNNGTC	2 cut(s)	212, 294
PkrI	GCNGC	1 cut(s)	63
PleI	GAGTC	2 cut(s)	60, 285
PluTI	GGCGCC	1 cut(s)	153
PpsI	GAGTC	2 cut(s)	60, 285
Psp124BI	GAGCTC	2 cut(s)	322, 340
Psp6I	CCWGG	1 cut(s)	195
PspFI	CCCAGC	1 cut(s)	258
PspGI	CCWGG	1 cut(s)	195
PspLI	CGTACG	1 cut(s)	51
PspN4I	GGNNCC	3 cut(s)	118, 151, 281
PspPI	GGNCC	1 cut(s)	100
PsyI	GACNNNGTC	2 cut(s)	212, 294
RsaI	GTAC	2 cut(s)	45, 53
RsaNI	GTAC	2 cut(s)	44, 52
SacI	GAGCTC	2 cut(s)	322, 340
SatI	GCNGC	1 cut(s)	62
Sau3AI	GATC	2 cut(s)	231, 271
Sau96I	GGNCC	1 cut(s)	100
ScaI	AGTACT	1 cut(s)	45
SchI	GAGTC	2 cut(s)	60, 285
ScrFI	CCNGG	1 cut(s)	197
SduI	GDGCHC	5 cut(s)	256, 282, 307, 322, 340
SfaNI	GCATC	1 cut(s)	226
SfoI	GGCGCC	1 cut(s)	151
SgrAI	CRCCGGYG	2 cut(s)	146, 327
Sse9I	AATT	2 cut(s)	95, 110
SsiI	CCGC	2 cut(s)	62, 331
SspDI	GGCGCC	1 cut(s)	149
SstI	GAGCTC	2 cut(s)	322, 340
StyD4I	CCNGG	1 cut(s)	195
StyI	CCWWGG	1 cut(s)	103
TaaI	ACNGT	1 cut(s)	43
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	1 cut(s)	234
TasI	AATT	2 cut(s)	95, 110
TatI	WGTACW	1 cut(s)	43
TauI	GCSGC	1 cut(s)	64
TfiI	GAWTC	1 cut(s)	226
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	284
Tth111I	GACNNNGTC	2 cut(s)	212, 294
VneI	GTGCAC	1 cut(s)	303
XagI	CCTNNNNNAGG	1 cut(s)	194
ZraI	GACGTC	1 cut(s)	214
ZrmI	AGTACT	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.