Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0011632

Physical Location & Seq

Genomic Coordinates Reverse (-)

29640804 .. 29642754

Gene Structure 1951 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG183500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGAAGAGAGCGGACGAAGCATCAGCACATTCAAGAAAACTCAGCAATCATACAGTTTTACCGTATGAAACCCCAAAATTGAGAGACCATTACCTGATGGGCAAGAAACTTGGGCAAGGCCAATTCGGAACCACATATCTTTGTACACACAAAACCACAGGGGCATTGTATGCTTGCAAATCCATCCCAAAGCGTAAGCTCATTTGTAGAGAAGACTACGATGACGTTTGGCGAGAGATTCAGATCATGCACCACTTGTCTGAACACCCATTTGTGGTTCAAATCAAAGGAACATATGAGGACGCTGTGTTTGTGCATTTGGTGATGGAGCTTTGCGCTGGTGGTGAGTTGTTTGATAGGATTGTTAAGAAGGGCCATTACAGTGAGAGAGAGGCTGCTAAGCTTATAAAGACAATTGTTGGGGTTGTCGAGGCCTGTCACTCTCTTGGGGTCATGCATAGGGATCTCAAACCTGAGAATTTCTTGTTTGATACTCCTTCTGATGATGCCAAGCTCAAAGCGACCGATTTTGGCTTGTCCATCTTCTATAAGCCAGAAACTGAAGCAGGAATCTTTCGACAGATATTACAGGGCAAAATAGATTTTGAATCTGAGCCTTGGCCTAGTATTACAGAAAGTGCAAAAGATTTGATGCTAAAGATGCTTGAGAGGGACCCAAGAAAAAGAATAACTGCCCATGAAGTCTTGTGTCACCCATGGATTGTTGATGATAGGGTTGCCCCAGACAAACCGCTAGACTCTGCAGTTTTGTCTCGCCTCAAGCAGTTTTCGGCAATGAATAAATTGAAAAAGATGGCTCTTCGTGTTATAGCAGAAAGACTTTCAGAGGAAGAAATTGGTGGTTTAAAGGAGTTGTTCAAGATGATTGACACGGATAATAGTGGGACAATAACATTTGAGGAACTTAAAGTGGGTTTGAAAAAAGTGGGCTCAGACCTAATGGAATCTGAAATCAAGTCTCTTATGGAAGCAGTTAATAGAGCACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009787 GO:0009789 GO:0009931 GO:0009966 GO:0009967 GO:0009987 GO:0010646 GO:0010647 GO:0010769 GO:0010857 GO:0010959 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0022898 GO:0023051 GO:0023052 GO:0023056 GO:0032409 GO:0032412 GO:0032879 GO:0034762 GO:0034765 GO:0035556 GO:0036211 GO:0040008 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043266 GO:0043269 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045595 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051128 GO:0051239 GO:0051510 GO:0051716 GO:0060284 GO:0065007 GO:0065009 GO:0071704 GO:0071944 GO:0080092 GO:0140096 GO:1901016 GO:1901379 GO:1901419 GO:1901421 GO:1901564 GO:1901979 GO:1904062 GO:1905957 GO:1905959 GO:2000241 GO:2001257

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 Pkinase

Protein Analysis

336

Amino Acids

38.23

Weight (kDa)

7.21

Isoelectric Point (pI)

38.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	33 - 187	1.1e-44	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	33 - 183	9.6e-17	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	193 - 241	1.5e-08	Protein kinase domain
EF-hand_1	PF00036	289 - 315	4.3e-08	EF hand domain
EF-hand_6	PF13405	289 - 317	2e-07	EF-hand domain
EF-hand_5	PF13202	289 - 310	4.7e-06	EF hand
EF-hand_7	PF13499	289 - 331	9.7e-06	EF-hand domain pair

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0011632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35670 AT4G09570
fragaria_vesca	FvH4_2g11790
malus_domestica	MD05G1041800.v1.1 MD10G1048300.v1.1
prunus_persica	Prupe.8G057600_v2.0.a1
pyrus_communis	pycom10g03420
rosa_chinensis	RchiOBHm_Chr6g0272011
rosa_laevigata	RLG00000013709
rosa_multiflora	Rmu_co8430291.1_g000001 Rmu_sc0014039.1_g000006
rosa_roxburghii	Rroxscaffold_173G00434970 Rroxscaffold_7G00196830
rosa_rugosa	Rorug06G0064900
rosa_samantha	Rh6BG184900 Rh6CG183500 Rh6DG175000
rosa_wichuraiana	Rw0G003460 Rw6G015690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	407
AccBSI	CCGCTC	1 cut(s)	11
AciI	CCGC	2 cut(s)	11, 752
AclWI	GGATC	1 cut(s)	471
AcsI	RAATTY	1 cut(s)	478
AcuI	CTGAAG	1 cut(s)	582
AfaI	GTAC	1 cut(s)	145
AfiI	CCNNNNNNNGG	1 cut(s)	274
AgsI	TTSAA	6 cut(s)	33, 281, 608, 808, 880, 940
AluBI	AGCT	4 cut(s)	199, 331, 403, 514
AluI	AGCT	4 cut(s)	199, 331, 403, 514
Alw21I	GWGCWC	1 cut(s)	1006
Alw26I	GTCTC	3 cut(s)	78, 777, 984
AlwI	GGATC	1 cut(s)	471
AlwNI	CAGNNNCTG	1 cut(s)	560
AoxI	GGCC	4 cut(s)	118, 373, 432, 620
ApeKI	GCWGC	1 cut(s)	395
ApoI	RAATTY	1 cut(s)	478
ArsI	GACNNNNNNTTYG	2 cut(s)	293, 325
AspLEI	GCGC	1 cut(s)	338
AspS9I	GGNCC	2 cut(s)	373, 673
AsuHPI	GGTGA	3 cut(s)	334, 356, 704
AvaII	GGWCC	1 cut(s)	673
BanII	GRGCYC	1 cut(s)	953
BarI	GAAGNNNNNNTAC	2 cut(s)	362, 394
BbsI	GAAGAC	1 cut(s)	219
Bbv12I	GWGCWC	1 cut(s)	1006
BbvI	GCAGC	1 cut(s)	382
BccI	CCATC	5 cut(s)	91, 191, 319, 548, 808
BcoDI	GTCTC	3 cut(s)	78, 777, 984
BfaI	CTAG	2 cut(s)	624, 755
BfmI	CTRYAG	1 cut(s)	762
BisI	GCNGC	1 cut(s)	396
BlpI	GCTNAGC	1 cut(s)	399
BlsI	GCNGC	1 cut(s)	397
Bme18I	GGWCC	1 cut(s)	673
BmgT120I	GGNCC	2 cut(s)	373, 673
BmiI	GGNNCC	3 cut(s)	130, 674, 675
BmsI	GCATC	4 cut(s)	29, 496, 642, 651
BpiI	GAAGAC	1 cut(s)	219
Bpu1102I	GCTNAGC	1 cut(s)	399
BpuEI	CTTGAG	2 cut(s)	686, 764
BsaBI	GATNNNNATC	1 cut(s)	242
BsaI	GGTCTC	1 cut(s)	78
BsaJI	CCNNGG	2 cut(s)	617, 716
Bsc4I	CCNNNNNNNGG	1 cut(s)	274
Bse3DI	GCAATG	1 cut(s)	801
Bse8I	GATNNNNATC	1 cut(s)	242
BseDI	CCNNGG	2 cut(s)	617, 716
BseGI	GGATG	1 cut(s)	183
BseJI	GATNNNNATC	1 cut(s)	242
BseLI	CCNNNNNNNGG	1 cut(s)	274
BseMI	GCAATG	1 cut(s)	801
BseMII	CTCAG	4 cut(s)	55, 465, 603, 966
BseXI	GCAGC	1 cut(s)	382
Bsh1285I	CGRYCG	1 cut(s)	525
BshFI	GGCC	4 cut(s)	120, 375, 434, 622
BsiEI	CGRYCG	1 cut(s)	525
BsiHKAI	GWGCWC	1 cut(s)	1006
BslFI	GGGAC	2 cut(s)	686, 919
BslI	CCNNNNNNNGG	1 cut(s)	274
BsmAI	GTCTC	3 cut(s)	78, 777, 984
BsmFI	GGGAC	2 cut(s)	686, 919
BsnI	GGCC	4 cut(s)	120, 375, 434, 622
Bso31I	GGTCTC	1 cut(s)	78
Bsp1286I	GDGCHC	2 cut(s)	953, 1006
Bsp1407I	TGTACA	1 cut(s)	143
Bsp143I	GATC	2 cut(s)	243, 463
Bsp1720I	GCTNAGC	1 cut(s)	399
Bsp19I	CCATGG	1 cut(s)	716
BspACI	CCGC	2 cut(s)	11, 752
BspANI	GGCC	4 cut(s)	120, 375, 434, 622
BspCNI	CTCAG	4 cut(s)	54, 466, 604, 965
BspLI	GGNNCC	3 cut(s)	130, 674, 675
BspMAI	CTGCAG	1 cut(s)	766
BspPI	GGATC	1 cut(s)	471
BspQI	GCTCTTC	1 cut(s)	825
BspTNI	GGTCTC	1 cut(s)	78
BsrBI	CCGCTC	1 cut(s)	11
BsrDI	GCAATG	1 cut(s)	801
BsrGI	TGTACA	1 cut(s)	143
BssECI	CCNNGG	2 cut(s)	617, 716
BssMI	GATC	2 cut(s)	243, 463
BssT1I	CCWWGG	2 cut(s)	617, 716
Bst4CI	ACNGT	3 cut(s)	55, 63, 383
Bst6I	CTCTTC	1 cut(s)	825
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstAUI	TGTACA	1 cut(s)	143
BstC8I	GCNNGC	1 cut(s)	175
BstDEI	CTNAG	5 cut(s)	41, 399, 474, 612, 952
BstDSI	CCRYGG	1 cut(s)	716
BstF5I	GGATG	1 cut(s)	183
BstHHI	GCGC	1 cut(s)	338
BstKTI	GATC	2 cut(s)	246, 466
BstMAI	GTCTC	3 cut(s)	78, 777, 984
BstMBI	GATC	2 cut(s)	243, 463
BstMCI	CGRYCG	1 cut(s)	525
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 170, 661
BstSFI	CTRYAG	1 cut(s)	762
BstV1I	GCAGC	1 cut(s)	382
BstV2I	GAAGAC	1 cut(s)	219
BstX2I	RGATCY	1 cut(s)	463
BstYI	RGATCY	1 cut(s)	463
BsuRI	GGCC	4 cut(s)	120, 375, 434, 622
BtgI	CCRYGG	1 cut(s)	716
BtsCI	GGATG	1 cut(s)	183
BtsIMutI	CAGTG	1 cut(s)	388
Cac8I	GCNNGC	1 cut(s)	175
CaiI	CAGNNNCTG	1 cut(s)	560
CfoI	GCGC	1 cut(s)	338
Cfr13I	GGNCC	2 cut(s)	373, 673
CseI	GACGC	1 cut(s)	311
Csp6I	GTAC	1 cut(s)	144
CviAII	CATG	4 cut(s)	247, 454, 698, 717
CviQI	GTAC	1 cut(s)	144
DdeI	CTNAG	5 cut(s)	41, 399, 474, 612, 952
DpnI	GATC	2 cut(s)	245, 465
DpnII	GATC	2 cut(s)	243, 463
DraI	TTTAAA	1 cut(s)	867
Eam1104I	CTCTTC	1 cut(s)	825
EarI	CTCTTC	1 cut(s)	825
Eco130I	CCWWGG	2 cut(s)	617, 716
Eco147I	AGGCCT	1 cut(s)	434
Eco24I	GRGCYC	1 cut(s)	953
Eco31I	GGTCTC	1 cut(s)	78
Eco47I	GGWCC	1 cut(s)	673
Eco57I	CTGAAG	1 cut(s)	582
EcoO109I	RGGNCCY	1 cut(s)	673
EcoT14I	CCWWGG	2 cut(s)	617, 716
EcoT22I	ATGCAT	1 cut(s)	459
EcoT38I	GRGCYC	1 cut(s)	953
ErhI	CCWWGG	2 cut(s)	617, 716
FaeI	CATG	4 cut(s)	250, 457, 701, 720
FaqI	GGGAC	2 cut(s)	686, 919
FatI	CATG	4 cut(s)	246, 453, 697, 716
FauNDI	CATATG	1 cut(s)	295
Fnu4HI	GCNGC	1 cut(s)	396
FokI	GGATG	1 cut(s)	170
FriOI	GRGCYC	1 cut(s)	953
Fsp4HI	GCNGC	1 cut(s)	396
FspBI	CTAG	2 cut(s)	624, 755
GlaI	GCGC	1 cut(s)	337
GluI	GCNGC	1 cut(s)	396
HaeIII	GGCC	4 cut(s)	120, 375, 434, 622
HgaI	GACGC	1 cut(s)	311
HhaI	GCGC	1 cut(s)	338
Hin1II	CATG	4 cut(s)	250, 457, 701, 720
Hin6I	GCGC	1 cut(s)	336
HinP1I	GCGC	1 cut(s)	336
HindIII	AAGCTT	1 cut(s)	401
HinfI	GANTC	5 cut(s)	238, 570, 608, 758, 965
HphI	GGTGA	3 cut(s)	334, 356, 704
Hpy166II	GTNNAC	1 cut(s)	146
Hpy188I	TCNGA	8 cut(s)	128, 243, 262, 502, 613, 847, 955, 970
Hpy188III	TCNNGA	2 cut(s)	33, 880
Hpy8I	GTNNAC	1 cut(s)	146
HpyAV	CCTTC	2 cut(s)	364, 507
HpyCH4III	ACNGT	3 cut(s)	55, 63, 383
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	6 cut(s)	177, 250, 316, 457, 641, 764
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 170, 661
HpyF3I	CTNAG	5 cut(s)	41, 399, 474, 612, 952
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	4 cut(s)	250, 457, 701, 720
HspAI	GCGC	1 cut(s)	336
KflI	GGGWCCC	1 cut(s)	673
Kzo9I	GATC	2 cut(s)	243, 463
LguI	GCTCTTC	1 cut(s)	825
LmnI	GCTCC	1 cut(s)	328
LpnPI	CCDG	9 cut(s)	107, 144, 324, 448, 486, 552, 567, 575, 756
Lsp1109I	GCAGC	1 cut(s)	382
LweI	GCATC	4 cut(s)	29, 496, 642, 651
MaeI	CTAG	2 cut(s)	624, 755
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	2 cut(s)	437, 710
MalI	GATC	2 cut(s)	245, 465
MbiI	CCGCTC	1 cut(s)	11
MboI	GATC	2 cut(s)	243, 463
MboII	GAAGA	5 cut(s)	16, 224, 535, 812, 863
MfeI	CAATTG	1 cut(s)	414
MflI	RGATCY	1 cut(s)	463
MhlI	GDGCHC	2 cut(s)	953, 1006
MluCI	AATT	6 cut(s)	77, 122, 414, 478, 803, 855
MlyI	GAGTC	1 cut(s)	752
MnlI	CCTC	7 cut(s)	292, 385, 424, 663, 788, 841, 913
Mph1103I	ATGCAT	1 cut(s)	459
MseI	TTAA	4 cut(s)	366, 866, 927, 996
MslI	CAYNNNNRTG	1 cut(s)	381
MunI	CAATTG	1 cut(s)	414
MwoI	GCNNNNNNNGC	3 cut(s)	17, 170, 661
NcoI	CCATGG	1 cut(s)	716
NdeI	CATATG	1 cut(s)	295
NdeII	GATC	2 cut(s)	243, 463
NlaIII	CATG	4 cut(s)	250, 457, 701, 720
NlaIV	GGNNCC	3 cut(s)	130, 674, 675
NmuCI	GTSAC	2 cut(s)	437, 710
NsiI	ATGCAT	1 cut(s)	459
PceI	AGGCCT	1 cut(s)	434
PciSI	GCTCTTC	1 cut(s)	825
PfeI	GAWTC	4 cut(s)	238, 570, 608, 965
PkrI	GCNGC	1 cut(s)	397
PleI	GAGTC	1 cut(s)	752
PpsI	GAGTC	1 cut(s)	752
PpuMI	RGGWCCY	1 cut(s)	673
PsiI	TTATAA	1 cut(s)	407
Psp5II	RGGWCCY	1 cut(s)	673
PspN4I	GGNNCC	3 cut(s)	130, 674, 675
PspPI	GGNCC	2 cut(s)	373, 673
PspPPI	RGGWCCY	1 cut(s)	673
PstI	CTGCAG	1 cut(s)	766
PstNI	CAGNNNCTG	1 cut(s)	560
PsuI	RGATCY	1 cut(s)	463
RsaI	GTAC	1 cut(s)	145
RsaNI	GTAC	1 cut(s)	144
RseI	CAYNNNNRTG	1 cut(s)	381
SapI	GCTCTTC	1 cut(s)	825
SaqAI	TTAA	4 cut(s)	366, 866, 927, 996
SatI	GCNGC	1 cut(s)	396
Sau3AI	GATC	2 cut(s)	243, 463
Sau96I	GGNCC	2 cut(s)	373, 673
SchI	GAGTC	1 cut(s)	752
SduI	GDGCHC	2 cut(s)	953, 1006
SetI	ASST	8 cut(s)	96, 201, 228, 333, 405, 475, 516, 960
SfaNI	GCATC	4 cut(s)	29, 496, 642, 651
SfcI	CTRYAG	1 cut(s)	762
SinI	GGWCC	1 cut(s)	673
SmiMI	CAYNNNNRTG	1 cut(s)	381
SmlI	CTYRAG	2 cut(s)	665, 779
SmoI	CTYRAG	2 cut(s)	665, 779
Sse9I	AATT	6 cut(s)	77, 122, 414, 478, 803, 855
SseBI	AGGCCT	1 cut(s)	434
SsiI	CCGC	2 cut(s)	11, 752
SspMI	CTAG	2 cut(s)	624, 755
StuI	AGGCCT	1 cut(s)	434
StyI	CCWWGG	2 cut(s)	617, 716
TaaI	ACNGT	3 cut(s)	55, 63, 383
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	2 cut(s)	429, 577
TaqII	GACCGA	1 cut(s)	539
TasI	AATT	6 cut(s)	77, 122, 414, 478, 803, 855
TatI	WGTACW	1 cut(s)	143
TfiI	GAWTC	4 cut(s)	238, 570, 608, 965
Tru1I	TTAA	4 cut(s)	366, 866, 927, 996
Tru9I	TTAA	4 cut(s)	366, 866, 927, 996
TscAI	CASTG	1 cut(s)	388
TseFI	GTSAC	2 cut(s)	437, 710
TseI	GCWGC	1 cut(s)	395
Tsp45I	GTSAC	2 cut(s)	437, 710
TspDTI	ATGAA	4 cut(s)	17, 81, 714, 812
TspGWI	ACGGA	1 cut(s)	908
TspRI	CASTG	1 cut(s)	388
VpaK11BI	GGWCC	1 cut(s)	673
XapI	RAATTY	1 cut(s)	478
XspI	CTAG	2 cut(s)	624, 755
Zsp2I	ATGCAT	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.