FvH4_2g12710

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0014473
Physical Location & Seq
Forward (+)
11177607 .. 11180428
2822 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g12710.t1

Sequence Viewer

Length: 708 bp
ATGAGCTTAGCACTCGTCCAGGGCTATTCTTCCTCTGAAGACGAAGAACAAGAGCCCCAACATGGCCTCCATTACCATAACTCCTCCTCCTCCGAAGACGACGGCGACGAGAGCAAACCCGCAGCGTCCTCCTCCATTTTGGAGCCTTCCCGACCCACGTCCTCCAACGCCTCCGCCCTCCCGTCTGCTTCCGACGTCTTCTCCGAGATTTCGGGACCCCCAGCTTTTTTGAACAACTGCGTCCAAGAATACGCTCCCCAGCAAGTGCGGCATGCTTCCCGTCACAACAAACACCGCAAGGACAAGAAACACTTGCCTGCTGGTGCAGTAGTGGAGTCCAAAGCTAATTTAGTTGGAATCCATGAACGAGTAAGAAGTGATCTTGATGGTAAGCAACCTCGATCTTTAGCTGATACAAGCACAAATGAAGGAGGTAAGCGTGTGGCAACTGTAACAAATCCCAGTGCAGAGGATGCTGCAGCGCTTCTCAGGATGTGCTTGCAGTGTGGAATTCCCAAGACCTATTCCAATGCACGCGGAATGGTCTGCCCAACATGTGGTGATCGTCCTGCAGACGCAACTGACGACTCCAAGAAGAAGGGGTCTACAATCAAAGATAAGGAGAAAAACAAGAGGATGAAAGGCCAGTCATCTCATGCTACATGGAAAAGTGAAACTGAAATGCAGCTTCGACAGCAATTTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

236

Amino Acids

25.49

Weight (kDa)

6.76

Isoelectric Point (pI)

65.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014473)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G64160
fragaria_vesca FvH4_2g12710
malus_domestica MD10G1051500.v1.1
prunus_persica Prupe.8G062400_v2.0.a1
pyrus_communis pycom10g03630
rosa_chinensis RchiOBHm_Chr6g0273461
rosa_laevigata RLG00000013615
rosa_multiflora Rmu_co8520659.1_g000001 Rmu_sc0005891.1_g000032 Rmu_sc0010380.1_g000009
rosa_roxburghii Rroxscaffold_7G00195310
rosa_rugosa Rorug06G0075500
rosa_samantha Rh6AG190200 Rh6BG193700 Rh6CG193200 Rh6DG184800
rosa_wichuraiana Rw6G016640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 198
AccB7I CCANNNNNTGG 1 cut(s) 557
AccI GTMKAC 1 cut(s) 605
AccII CGCG 1 cut(s) 537
AciI CCGC 5 cut(s) 120, 174, 268, 295, 537
AcsI RAATTY 1 cut(s) 510
AcuI CTGAAG 1 cut(s) 57
AcyI GRCGYC 1 cut(s) 195
AfeI AGCGCT 1 cut(s) 483
AfiI CCNNNNNNNGG 2 cut(s) 62, 557
AflIII ACRYGT 1 cut(s) 554
AgsI TTSAA 1 cut(s) 232
AjiI CACGTC 1 cut(s) 159
AjnI CCWGG 1 cut(s) 18
AluBI AGCT 5 cut(s) 6, 224, 344, 410, 688
AluI AGCT 5 cut(s) 6, 224, 344, 410, 688
Aor51HI AGCGCT 1 cut(s) 483
AoxI GGCC 2 cut(s) 64, 643
ApeKI GCWGC 4 cut(s) 122, 476, 479, 685
ApoI RAATTY 1 cut(s) 510
AspLEI GCGC 1 cut(s) 484
AspS9I GGNCC 1 cut(s) 215
AsuHPI GGTGA 1 cut(s) 572
AvaII GGWCC 1 cut(s) 215
BanII GRGCYC 1 cut(s) 57
BbsI GAAGAC 3 cut(s) 45, 102, 190
BbvI GCAGC 4 cut(s) 134, 463, 491, 697
BccI CCATC 1 cut(s) 380
BceAI ACGGC 1 cut(s) 118
BciT130I CCWGG 1 cut(s) 20
BfmI CTRYAG 2 cut(s) 477, 570
BfoI RGCGCY 1 cut(s) 485
BisI GCNGC 5 cut(s) 123, 269, 477, 480, 686
BlpI GCTNAGC 1 cut(s) 7
BlsI GCNGC 5 cut(s) 124, 270, 478, 481, 687
Bme1390I CCNGG 1 cut(s) 20
Bme18I GGWCC 1 cut(s) 215
BmgBI CACGTC 1 cut(s) 159
BmgT120I GGNCC 1 cut(s) 215
BmiI GGNNCC 3 cut(s) 144, 216, 217
BmrFI CCNGG 1 cut(s) 20
BmrI ACTGGG 1 cut(s) 456
BmsI GCATC 1 cut(s) 463
BmuI ACTGGG 1 cut(s) 456
BoxI GACNNNNGTC 1 cut(s) 157
BpiI GAAGAC 3 cut(s) 45, 102, 190
Bpu1102I GCTNAGC 1 cut(s) 7
BsaHI GRCGYC 1 cut(s) 195
BsaJI CCNNGG 1 cut(s) 19
BsaXI ACNNNNNCTCC 8 cut(s) 51, 65, 71, 81, 95, 101, 185, 215
Bsc4I CCNNNNNNNGG 2 cut(s) 62, 557
Bse1I ACTGG 2 cut(s) 462, 646
BseBI CCWGG 1 cut(s) 20
BseDI CCNNGG 1 cut(s) 19
BseGI GGATG 3 cut(s) 478, 498, 642
BseLI CCNNNNNNNGG 2 cut(s) 62, 557
BseMII CTCAG 1 cut(s) 502
BseNI ACTGG 2 cut(s) 462, 646
BseRI GAGGAG 4 cut(s) 73, 76, 79, 121
BseXI GCAGC 4 cut(s) 134, 463, 491, 697
BseYI CCCAGC 2 cut(s) 220, 258
BsgI GTGCAG 2 cut(s) 345, 486
Bsh1236I CGCG 1 cut(s) 537
BshFI GGCC 2 cut(s) 66, 645
BslFI GGGAC 1 cut(s) 228
BslI CCNNNNNNNGG 2 cut(s) 62, 557
BsmFI GGGAC 1 cut(s) 228
BsnI GGCC 2 cut(s) 66, 645
Bsp1286I GDGCHC 1 cut(s) 57
Bsp143I GATC 3 cut(s) 379, 401, 562
Bsp1720I GCTNAGC 1 cut(s) 7
BspACI CCGC 5 cut(s) 120, 174, 268, 295, 537
BspANI GGCC 2 cut(s) 66, 645
BspCNI CTCAG 1 cut(s) 501
BspFNI CGCG 1 cut(s) 537
BspLI GGNNCC 3 cut(s) 144, 216, 217
BspMAI CTGCAG 2 cut(s) 481, 574
BsrI ACTGG 2 cut(s) 462, 646
BssECI CCNNGG 1 cut(s) 19
BssMI GATC 3 cut(s) 379, 401, 562
BssNI GRCGYC 1 cut(s) 195
Bst2UI CCWGG 1 cut(s) 20
Bst4CI ACNGT 1 cut(s) 451
BstACI GRCGYC 1 cut(s) 195
BstAPI GCANNNNNTGC 1 cut(s) 473
BstC8I GCNNGC 4 cut(s) 273, 318, 500, 535
BstDEI CTNAG 2 cut(s) 7, 488
BstF5I GGATG 3 cut(s) 478, 498, 642
BstFNI CGCG 1 cut(s) 537
BstH2I RGCGCY 1 cut(s) 485
BstHHI GCGC 1 cut(s) 484
BstKTI GATC 3 cut(s) 382, 404, 565
BstMBI GATC 3 cut(s) 379, 401, 562
BstMWI GCNNNNNNNGC 4 cut(s) 111, 268, 473, 694
BstNI CCWGG 1 cut(s) 20
BstNSI RCATGY 2 cut(s) 275, 558
BstPAI GACNNNNGTC 1 cut(s) 157
BstSCI CCNGG 1 cut(s) 18
BstSFI CTRYAG 2 cut(s) 477, 570
BstUI CGCG 1 cut(s) 537
BstV1I GCAGC 4 cut(s) 134, 463, 491, 697
BstV2I GAAGAC 3 cut(s) 45, 102, 190
BsuRI GGCC 2 cut(s) 66, 645
BtrI CACGTC 1 cut(s) 159
BtsCI GGATG 3 cut(s) 478, 498, 642
BtsI GCAGTG 1 cut(s) 509
BtsIMutI CAGTG 2 cut(s) 469, 509
Cac8I GCNNGC 4 cut(s) 273, 318, 500, 535
CfoI GCGC 1 cut(s) 484
Cfr13I GGNCC 1 cut(s) 215
CseI GACGC 3 cut(s) 114, 229, 584
CviAII CATG 6 cut(s) 62, 272, 362, 555, 656, 663
DdeI CTNAG 2 cut(s) 7, 488
DpnI GATC 3 cut(s) 381, 403, 564
DpnII GATC 3 cut(s) 379, 401, 562
EciI GGCGGA 1 cut(s) 163
Eco24I GRGCYC 1 cut(s) 57
Eco47I GGWCC 1 cut(s) 215
Eco47III AGCGCT 1 cut(s) 483
Eco57I CTGAAG 1 cut(s) 57
EcoO109I RGGNCCY 1 cut(s) 215
EcoRI GAATTC 1 cut(s) 510
EcoRII CCWGG 1 cut(s) 18
EcoT38I GRGCYC 1 cut(s) 57
FaeI CATG 6 cut(s) 65, 275, 365, 558, 659, 666
FaiI YATR 7 cut(s) 63, 78, 273, 363, 556, 657, 664
FalI AAGNNNNNCTT 2 cut(s) 296, 328
FaqI GGGAC 1 cut(s) 228
FatI CATG 6 cut(s) 61, 271, 361, 554, 655, 662
FauI CCCGC 1 cut(s) 127
FblI GTMKAC 1 cut(s) 605
Fnu4HI GCNGC 5 cut(s) 123, 269, 477, 480, 686
FokI GGATG 3 cut(s) 485, 505, 649
FriOI GRGCYC 1 cut(s) 57
Fsp4HI GCNGC 5 cut(s) 123, 269, 477, 480, 686
GlaI GCGC 1 cut(s) 483
GluI GCNGC 5 cut(s) 123, 269, 477, 480, 686
GsaI CCCAGC 2 cut(s) 224, 262
HaeII RGCGCY 1 cut(s) 485
HaeIII GGCC 2 cut(s) 66, 645
HgaI GACGC 3 cut(s) 114, 229, 584
HhaI GCGC 1 cut(s) 484
Hin1I GRCGYC 1 cut(s) 195
Hin1II CATG 6 cut(s) 65, 275, 365, 558, 659, 666
Hin6I GCGC 1 cut(s) 482
HinP1I GCGC 1 cut(s) 482
HinfI GANTC 3 cut(s) 335, 357, 587
HphI GGTGA 1 cut(s) 572
Hpy166II GTNNAC 1 cut(s) 606
Hpy188I TCNGA 4 cut(s) 37, 94, 193, 205
Hpy188III TCNNGA 4 cut(s) 150, 213, 383, 490
Hpy8I GTNNAC 1 cut(s) 606
Hpy99I CGWCG 3 cut(s) 104, 110, 197
HpyAV CCTTC 3 cut(s) 156, 422, 592
HpyCH4III ACNGT 1 cut(s) 451
HpyCH4IV ACGT 2 cut(s) 158, 195
HpyCH4V TGCA 7 cut(s) 326, 467, 479, 502, 533, 572, 685
HpyF10VI GCNNNNNNNGC 4 cut(s) 111, 268, 473, 694
HpyF3I CTNAG 2 cut(s) 7, 488
HpySE526I ACGT 2 cut(s) 158, 195
Hsp92I GRCGYC 1 cut(s) 195
Hsp92II CATG 6 cut(s) 65, 275, 365, 558, 659, 666
HspAI GCGC 1 cut(s) 482
KflI GGGWCCC 1 cut(s) 215
Kzo9I GATC 3 cut(s) 379, 401, 562
LmnI GCTCC 2 cut(s) 142, 259
Lsp1109I GCAGC 4 cut(s) 134, 463, 491, 697
LweI GCATC 1 cut(s) 463
MaeII ACGT 2 cut(s) 158, 195
MaeIII GTNAC 2 cut(s) 281, 451
MalI GATC 3 cut(s) 381, 403, 564
MboI GATC 3 cut(s) 379, 401, 562
MboII GAAGA 6 cut(s) 21, 50, 56, 107, 190, 607
MhlI GDGCHC 1 cut(s) 57
MluCI AATT 3 cut(s) 346, 510, 698
MlyI GAGTC 2 cut(s) 344, 581
MmeI TCCRAC 3 cut(s) 189, 216, 334
MspR9I CCNGG 1 cut(s) 20
MvaI CCWGG 1 cut(s) 20
MvnI CGCG 1 cut(s) 537
MwoI GCNNNNNNNGC 4 cut(s) 111, 268, 473, 694
NdeII GATC 3 cut(s) 379, 401, 562
NlaIII CATG 6 cut(s) 65, 275, 365, 558, 659, 666
NlaIV GGNNCC 3 cut(s) 144, 216, 217
NmuCI GTSAC 1 cut(s) 281
NspI RCATGY 2 cut(s) 275, 558
PaeI GCATGC 1 cut(s) 275
PciI ACATGT 1 cut(s) 554
PcsI WCGNNNNNNNCGW 3 cut(s) 105, 201, 582
PfeI GAWTC 1 cut(s) 357
PflMI CCANNNNNTGG 1 cut(s) 557
PkrI GCNGC 5 cut(s) 124, 270, 478, 481, 687
PleI GAGTC 2 cut(s) 343, 581
PpsI GAGTC 2 cut(s) 343, 581
PpuMI RGGWCCY 1 cut(s) 215
PscI ACATGT 1 cut(s) 554
PshAI GACNNNNGTC 1 cut(s) 157
Psp5II RGGWCCY 1 cut(s) 215
Psp6I CCWGG 1 cut(s) 18
PspFI CCCAGC 2 cut(s) 220, 258
PspGI CCWGG 1 cut(s) 18
PspN4I GGNNCC 3 cut(s) 144, 216, 217
PspPI GGNCC 1 cut(s) 215
PspPPI RGGWCCY 1 cut(s) 215
PstI CTGCAG 2 cut(s) 481, 574
SatI GCNGC 5 cut(s) 123, 269, 477, 480, 686
Sau3AI GATC 3 cut(s) 379, 401, 562
Sau96I GGNCC 1 cut(s) 215
SchI GAGTC 2 cut(s) 344, 581
ScrFI CCNGG 1 cut(s) 20
SduI GDGCHC 1 cut(s) 57
SfaNI GCATC 1 cut(s) 463
SfcI CTRYAG 2 cut(s) 477, 570
SinI GGWCC 1 cut(s) 215
SphI GCATGC 1 cut(s) 275
Sse9I AATT 3 cut(s) 346, 510, 698
SsiI CCGC 5 cut(s) 120, 174, 268, 295, 537
StyD4I CCNGG 1 cut(s) 18
TaaI ACNGT 1 cut(s) 451
TaiI ACGT 2 cut(s) 161, 198
TaqI TCGA 2 cut(s) 400, 691
TasI AATT 3 cut(s) 346, 510, 698
TauI GCSGC 1 cut(s) 271
TfiI GAWTC 1 cut(s) 357
TscAI CASTG 2 cut(s) 469, 509
TseFI GTSAC 1 cut(s) 281
TseI GCWGC 4 cut(s) 122, 476, 479, 685
Tsp45I GTSAC 1 cut(s) 281
TspDTI ATGAA 3 cut(s) 378, 441, 653
TspRI CASTG 2 cut(s) 469, 509
Van91I CCANNNNNTGG 1 cut(s) 557
VpaK11BI GGWCC 1 cut(s) 215
XapI RAATTY 1 cut(s) 510
XceI RCATGY 2 cut(s) 275, 558
XmiI GTMKAC 1 cut(s) 605
ZraI GACGTC 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.