Rmu_co8520659.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8520659.1
OG0014473
Physical Location & Seq
Reverse (-)
2747 .. 3990
1244 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8520659.1_g000001.1.cds

Sequence Viewer

Length: 396 bp
atgactcttggtgcagtcgtggtgtccaaagctcatttagttggtatccatgaacgagtaagaagtgatcttgatggtaagcaacctccaacagtagctgatgcaagcacaaatcaaggaggcaagcgtgtggcaactgtaacaaatcccagtgcagaggatgctgcagcgcttctgaggatgtgtttgcaatgtggaatacccaagaccttctccaatgcacggggaatggtctgcccagcatgtggtgatcggcctgtagacgcaactgacgactccaagaagaaggggtctacaatcaaagataaggagaagaataagaggatgaaaggccagtcatctcatgctacatggaaaagtgaaactgaaatgcagcttcgacagcaatttgactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.13

Weight (kDa)

9.33

Isoelectric Point (pI)

42.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014473)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G64160
fragaria_vesca FvH4_2g12710
malus_domestica MD10G1051500.v1.1
prunus_persica Prupe.8G062400_v2.0.a1
pyrus_communis pycom10g03630
rosa_chinensis RchiOBHm_Chr6g0273461
rosa_laevigata RLG00000013615
rosa_multiflora Rmu_co8520659.1_g000001 Rmu_sc0005891.1_g000032 Rmu_sc0010380.1_g000009
rosa_roxburghii Rroxscaffold_7G00195310
rosa_rugosa Rorug06G0075500
rosa_samantha Rh6AG190200 Rh6BG193700 Rh6CG193200 Rh6DG184800
rosa_wichuraiana Rw6G016640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 245
AccI GTMKAC 2 cut(s) 261, 293
AfeI AGCGCT 1 cut(s) 171
AfiI CCNNNNNNNGG 2 cut(s) 222, 245
AluBI AGCT 3 cut(s) 32, 98, 376
AluI AGCT 3 cut(s) 32, 98, 376
AlwNI CAGNNNCTG 1 cut(s) 98
Aor51HI AGCGCT 1 cut(s) 171
AoxI GGCC 2 cut(s) 254, 331
ApeKI GCWGC 3 cut(s) 164, 167, 373
AspLEI GCGC 1 cut(s) 172
AsuHPI GGTGA 1 cut(s) 260
BbvI GCAGC 3 cut(s) 151, 179, 385
BccI CCATC 1 cut(s) 68
BciVI GTATCC 1 cut(s) 56
BfaI CTAG 1 cut(s) 394
BfmI CTRYAG 2 cut(s) 165, 258
BfoI RGCGCY 1 cut(s) 173
BfuI GTATCC 1 cut(s) 56
BisI GCNGC 3 cut(s) 165, 168, 374
BlsI GCNGC 3 cut(s) 166, 169, 375
BmrI ACTGGG 1 cut(s) 144
BmsI GCATC 2 cut(s) 91, 151
BmuI ACTGGG 1 cut(s) 144
Bsc4I CCNNNNNNNGG 2 cut(s) 222, 245
Bse1I ACTGG 2 cut(s) 150, 334
Bse3DI GCAATG 1 cut(s) 197
BseGI GGATG 3 cut(s) 166, 186, 330
BseLI CCNNNNNNNGG 2 cut(s) 222, 245
BseMI GCAATG 1 cut(s) 197
BseMII CTCAG 1 cut(s) 167
BseNI ACTGG 2 cut(s) 150, 334
BseXI GCAGC 3 cut(s) 151, 179, 385
BseYI CCCAGC 1 cut(s) 238
BsgI GTGCAG 2 cut(s) 33, 174
BshFI GGCC 2 cut(s) 256, 333
BslI CCNNNNNNNGG 2 cut(s) 222, 245
BsnI GGCC 2 cut(s) 256, 333
Bsp143I GATC 2 cut(s) 67, 250
BspANI GGCC 2 cut(s) 256, 333
BspCNI CTCAG 1 cut(s) 168
BspMAI CTGCAG 1 cut(s) 169
BsrDI GCAATG 1 cut(s) 197
BsrI ACTGG 2 cut(s) 150, 334
BssMI GATC 2 cut(s) 67, 250
Bst4CI ACNGT 2 cut(s) 94, 139
BstAPI GCANNNNNTGC 1 cut(s) 161
BstC8I GCNNGC 2 cut(s) 106, 125
BstDEI CTNAG 1 cut(s) 176
BstF5I GGATG 3 cut(s) 166, 186, 330
BstH2I RGCGCY 1 cut(s) 173
BstHHI GCGC 1 cut(s) 172
BstKTI GATC 2 cut(s) 70, 253
BstMBI GATC 2 cut(s) 67, 250
BstMWI GCNNNNNNNGC 2 cut(s) 161, 382
BstNSI RCATGY 1 cut(s) 246
BstSFI CTRYAG 2 cut(s) 165, 258
BstV1I GCAGC 3 cut(s) 151, 179, 385
BsuI GTATCC 1 cut(s) 56
BsuRI GGCC 2 cut(s) 256, 333
BtsCI GGATG 3 cut(s) 166, 186, 330
BtsIMutI CAGTG 1 cut(s) 157
Cac8I GCNNGC 2 cut(s) 106, 125
CaiI CAGNNNCTG 1 cut(s) 98
CfoI GCGC 1 cut(s) 172
CseI GACGC 1 cut(s) 272
CviAII CATG 4 cut(s) 50, 243, 344, 351
CviJI RGCY 5 cut(s) 32, 98, 256, 333, 376
CviKI_1 RGCY 5 cut(s) 32, 98, 256, 333, 376
DdeI CTNAG 1 cut(s) 176
DpnI GATC 2 cut(s) 69, 252
DpnII GATC 2 cut(s) 67, 250
Eco47III AGCGCT 1 cut(s) 171
FaeI CATG 4 cut(s) 53, 246, 347, 354
FaiI YATR 4 cut(s) 51, 244, 345, 352
FatI CATG 4 cut(s) 49, 242, 343, 350
FblI GTMKAC 2 cut(s) 261, 293
Fnu4HI GCNGC 3 cut(s) 165, 168, 374
FokI GGATG 3 cut(s) 173, 193, 337
Fsp4HI GCNGC 3 cut(s) 165, 168, 374
FspBI CTAG 1 cut(s) 394
GlaI GCGC 1 cut(s) 171
GluI GCNGC 3 cut(s) 165, 168, 374
GsaI CCCAGC 1 cut(s) 242
HaeII RGCGCY 1 cut(s) 173
HaeIII GGCC 2 cut(s) 256, 333
HgaI GACGC 1 cut(s) 272
HhaI GCGC 1 cut(s) 172
Hin1II CATG 4 cut(s) 53, 246, 347, 354
Hin6I GCGC 1 cut(s) 170
HinP1I GCGC 1 cut(s) 170
HinfI GANTC 2 cut(s) 4, 275
HphI GGTGA 1 cut(s) 260
Hpy166II GTNNAC 2 cut(s) 262, 294
Hpy188I TCNGA 1 cut(s) 177
Hpy188III TCNNGA 1 cut(s) 71
Hpy8I GTNNAC 2 cut(s) 262, 294
HpyAV CCTTC 2 cut(s) 220, 280
HpyCH4III ACNGT 2 cut(s) 94, 139
HpyCH4V TGCA 7 cut(s) 14, 104, 155, 167, 190, 221, 373
HpyF10VI GCNNNNNNNGC 2 cut(s) 161, 382
HpyF3I CTNAG 1 cut(s) 176
Hsp92II CATG 4 cut(s) 53, 246, 347, 354
HspAI GCGC 1 cut(s) 170
Kzo9I GATC 2 cut(s) 67, 250
LpnPI CCDG 4 cut(s) 163, 252, 270, 347
Lsp1109I GCAGC 3 cut(s) 151, 179, 385
LweI GCATC 2 cut(s) 91, 151
MaeI CTAG 1 cut(s) 394
MaeIII GTNAC 1 cut(s) 139
MalI GATC 2 cut(s) 69, 252
MboI GATC 2 cut(s) 67, 250
MboII GAAGA 2 cut(s) 295, 325
MluCI AATT 1 cut(s) 386
MlyI GAGTC 1 cut(s) 269
MmeI TCCRAC 1 cut(s) 113
MnlI CCTC 5 cut(s) 96, 113, 151, 171, 315
MwoI GCNNNNNNNGC 2 cut(s) 161, 382
NdeII GATC 2 cut(s) 67, 250
NlaIII CATG 4 cut(s) 53, 246, 347, 354
NspI RCATGY 1 cut(s) 246
PcsI WCGNNNNNNNCGW 1 cut(s) 270
PflMI CCANNNNNTGG 1 cut(s) 245
PkrI GCNGC 3 cut(s) 166, 169, 375
PleI GAGTC 1 cut(s) 269
PpsI GAGTC 1 cut(s) 269
PspFI CCCAGC 1 cut(s) 238
PstI CTGCAG 1 cut(s) 169
PstNI CAGNNNCTG 1 cut(s) 98
SatI GCNGC 3 cut(s) 165, 168, 374
Sau3AI GATC 2 cut(s) 67, 250
SchI GAGTC 1 cut(s) 269
SetI ASST 5 cut(s) 34, 88, 100, 212, 378
SfaNI GCATC 2 cut(s) 91, 151
SfcI CTRYAG 2 cut(s) 165, 258
Sse9I AATT 1 cut(s) 386
SspMI CTAG 1 cut(s) 394
TaaI ACNGT 2 cut(s) 94, 139
TaqI TCGA 1 cut(s) 379
TasI AATT 1 cut(s) 386
TscAI CASTG 1 cut(s) 157
TseI GCWGC 3 cut(s) 164, 167, 373
TspDTI ATGAA 2 cut(s) 66, 341
TspRI CASTG 1 cut(s) 157
Van91I CCANNNNNTGG 1 cut(s) 245
XceI RCATGY 1 cut(s) 246
XmiI GTMKAC 2 cut(s) 261, 293
XspI CTAG 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.