pycom10g03630

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0014473
Physical Location & Seq
Forward (+)
3940819 .. 3942814
1996 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g03630.4

Sequence Viewer

Length: 729 bp
ATGAGCTTGGCGTTCCTCCAGGGCTATTCTTCCCCTGAAGAAGAAGAGCAAGATCACCGCCTCCATTACCATGGCTCAAGCTCCACTGACGATGATGATAACGACGACGGCGATGACCAAGCCCACAAAGCCACATCCGTCTTTGACTTTCCAAAACCCTCCTCCTCCGTTGCTTCTACCCTACCTTCTGCATCCGACGTCTTTTCTGAGATTTCCGGACCACCCGAGTTTCTCAACAACTGCGTACAAGAAGACCCTTCCACAAGGGATGCCGGTCCTCAGCGGGGGAGGCATGGTGTCCGCAACGGCAAACTTCAGAAGGAAAAGAAAGATTTACCTTCTGGTGCTGTAGTGGAGTCCAAAGCTCATTTAGTTGGAATTCATGAGCGAGTAAGAAGTGATTTTGAGGGTAAGCAACCTCCAACATCAGTGGTTATGAGCACCGCTGAAGGTGCCAAGCGTGTGCCAACTGCAACAAATCCTAGTGCAGAAGATGCTGCAGCGCTTCTTAGGATGTGTTTGCAATGTGGAATACCCAAGACCTACTCCAATGCAAGGGGAATGGTCTGCCCAACATGCGGAGATCGTCCTGTAGATCCAACCAATGATTCCAAGAAGAAGGGATCTACGGTGAAAGATAAGGAGAAGAGTAAGAGGATGAAGGGACAGTCGTCTCATGCTACATGGAAAAGTGAAACTGAAATGCATCTTCGACAGCAGTTTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

243

Amino Acids

26.37

Weight (kDa)

6.0

Isoelectric Point (pI)

58.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014473)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G64160
fragaria_vesca FvH4_2g12710
malus_domestica MD10G1051500.v1.1
prunus_persica Prupe.8G062400_v2.0.a1
pyrus_communis pycom10g03630
rosa_chinensis RchiOBHm_Chr6g0273461
rosa_laevigata RLG00000013615
rosa_multiflora Rmu_co8520659.1_g000001 Rmu_sc0005891.1_g000032 Rmu_sc0010380.1_g000009
rosa_roxburghii Rroxscaffold_7G00195310
rosa_rugosa Rorug06G0075500
rosa_samantha Rh6AG190200 Rh6BG193700 Rh6CG193200 Rh6DG184800
rosa_wichuraiana Rw6G016640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 201
AccB1I GGYRCC 1 cut(s) 452
AccIII TCCGGA 1 cut(s) 215
AciI CCGC 5 cut(s) 58, 283, 301, 444, 579
AclWI GGATC 2 cut(s) 590, 631
AcsI RAATTY 1 cut(s) 378
AcuI CTGAAG 3 cut(s) 57, 299, 468
AcyI GRCGYC 1 cut(s) 198
AfaI GTAC 1 cut(s) 246
AfeI AGCGCT 1 cut(s) 504
AfiI CCNNNNNNNGG 3 cut(s) 284, 555, 578
AjnI CCWGG 1 cut(s) 18
AjuI GAANNNNNNNTTGG 2 cut(s) 592, 624
AluBI AGCT 3 cut(s) 6, 81, 365
AluI AGCT 3 cut(s) 6, 81, 365
Alw21I GWGCWC 1 cut(s) 443
Alw26I GTCTC 1 cut(s) 678
AlwI GGATC 2 cut(s) 590, 631
Ama87I CYCGRG 1 cut(s) 224
Aor13HI TCCGGA 1 cut(s) 215
Aor51HI AGCGCT 1 cut(s) 504
ApeKI GCWGC 2 cut(s) 497, 500
ApoI RAATTY 1 cut(s) 378
AspLEI GCGC 1 cut(s) 505
AspS9I GGNCC 2 cut(s) 218, 275
AsuHPI GGTGA 2 cut(s) 47, 643
AvaI CYCGRG 1 cut(s) 224
AvaII GGWCC 2 cut(s) 218, 275
BanI GGYRCC 1 cut(s) 452
BbsI GAAGAC 1 cut(s) 258
Bbv12I GWGCWC 1 cut(s) 443
BbvCI CCTCAGC 1 cut(s) 279
BbvI GCAGC 2 cut(s) 484, 512
BceAI ACGGC 2 cut(s) 124, 322
BciT130I CCWGG 1 cut(s) 20
BcoDI GTCTC 1 cut(s) 678
BfaI CTAG 2 cut(s) 483, 727
BfmI CTRYAG 3 cut(s) 348, 498, 591
BfoI RGCGCY 1 cut(s) 506
BisI GCNGC 2 cut(s) 498, 501
BlsI GCNGC 2 cut(s) 499, 502
Bme1390I CCNGG 1 cut(s) 20
Bme18I GGWCC 2 cut(s) 218, 275
BmeT110I CYCGRG 1 cut(s) 224
BmgT120I GGNCC 2 cut(s) 218, 275
BmiI GGNNCC 1 cut(s) 454
BmrFI CCNGG 1 cut(s) 20
BmsI GCATC 4 cut(s) 200, 259, 484, 715
BoxI GACNNNNGTC 1 cut(s) 670
BpiI GAAGAC 1 cut(s) 258
Bpu10I CCTNAGC 1 cut(s) 279
BpuEI CTTGAG 1 cut(s) 61
BsaHI GRCGYC 1 cut(s) 198
BsaJI CCNNGG 2 cut(s) 19, 70
BsaWI WCCGGW 1 cut(s) 215
BsaXI ACNNNNNCTCC 2 cut(s) 280, 310
Bsc4I CCNNNNNNNGG 3 cut(s) 284, 555, 578
Bse118I RCCGGY 1 cut(s) 272
Bse3DI GCAATG 1 cut(s) 530
BseAI TCCGGA 1 cut(s) 215
BseBI CCWGG 1 cut(s) 20
BseDI CCNNGG 2 cut(s) 19, 70
BseGI GGATG 5 cut(s) 134, 191, 274, 519, 663
BseLI CCNNNNNNNGG 3 cut(s) 284, 555, 578
BseMI GCAATG 1 cut(s) 530
BseMII CTCAG 2 cut(s) 198, 293
BseRI GAGGAG 2 cut(s) 151, 154
BseXI GCAGC 2 cut(s) 484, 512
BsgI GTGCAG 1 cut(s) 507
BshNI GGYRCC 1 cut(s) 452
BsiHKAI GWGCWC 1 cut(s) 443
BsiHKCI CYCGRG 1 cut(s) 224
BsiSI CCGG 2 cut(s) 216, 273
BslFI GGGAC 1 cut(s) 678
BslI CCNNNNNNNGG 3 cut(s) 284, 555, 578
BsmAI GTCTC 1 cut(s) 678
BsmBI CGTCTC 1 cut(s) 678
BsmFI GGGAC 1 cut(s) 678
BsoBI CYCGRG 1 cut(s) 224
Bsp1286I GDGCHC 1 cut(s) 443
Bsp13I TCCGGA 1 cut(s) 215
Bsp143I GATC 4 cut(s) 52, 583, 595, 623
Bsp19I CCATGG 1 cut(s) 70
BspACI CCGC 5 cut(s) 58, 283, 301, 444, 579
BspCNI CTCAG 2 cut(s) 199, 292
BspEI TCCGGA 1 cut(s) 215
BspHI TCATGA 1 cut(s) 382
BspLI GGNNCC 1 cut(s) 454
BspMAI CTGCAG 1 cut(s) 502
BspPI GGATC 2 cut(s) 590, 631
BspQI GCTCTTC 1 cut(s) 39
BspT107I GGYRCC 1 cut(s) 452
BsrDI GCAATG 1 cut(s) 530
BsrFI RCCGGY 1 cut(s) 272
BssAI RCCGGY 1 cut(s) 272
BssECI CCNNGG 2 cut(s) 19, 70
BssMI GATC 4 cut(s) 52, 583, 595, 623
BssNI GRCGYC 1 cut(s) 198
BssT1I CCWWGG 1 cut(s) 70
Bst2UI CCWGG 1 cut(s) 20
Bst4CI ACNGT 2 cut(s) 631, 669
Bst6I CTCTTC 2 cut(s) 39, 641
BstACI GRCGYC 1 cut(s) 198
BstAPI GCANNNNNTGC 1 cut(s) 494
BstDEI CTNAG 3 cut(s) 207, 279, 509
BstDSI CCRYGG 1 cut(s) 70
BstF5I GGATG 5 cut(s) 134, 191, 274, 519, 663
BstH2I RGCGCY 1 cut(s) 506
BstHHI GCGC 1 cut(s) 505
BstKTI GATC 4 cut(s) 55, 586, 598, 626
BstMAI GTCTC 1 cut(s) 678
BstMBI GATC 4 cut(s) 52, 583, 595, 623
BstMWI GCNNNNNNNGC 5 cut(s) 128, 289, 452, 494, 576
BstNI CCWGG 1 cut(s) 20
BstNSI RCATGY 1 cut(s) 579
BstPAI GACNNNNGTC 1 cut(s) 670
BstSCI CCNGG 1 cut(s) 18
BstSFI CTRYAG 3 cut(s) 348, 498, 591
BstV1I GCAGC 2 cut(s) 484, 512
BstV2I GAAGAC 1 cut(s) 258
BstX2I RGATCY 2 cut(s) 595, 623
BstXI CCANNNNNNTGG 1 cut(s) 71
BstYI RGATCY 2 cut(s) 595, 623
BtgI CCRYGG 1 cut(s) 70
BtgZI GCGATG 1 cut(s) 126
BtsCI GGATG 5 cut(s) 134, 191, 274, 519, 663
BtsIMutI CAGTG 2 cut(s) 84, 435
CciI TCATGA 1 cut(s) 382
CfoI GCGC 1 cut(s) 505
Cfr10I RCCGGY 1 cut(s) 272
Cfr13I GGNCC 2 cut(s) 218, 275
Csp6I GTAC 1 cut(s) 245
CspCI CAANNNNNGTGG 2 cut(s) 411, 446
CviAII CATG 6 cut(s) 71, 293, 383, 576, 677, 684
CviJI RGCY 7 cut(s) 6, 24, 75, 81, 122, 131, 365
CviKI_1 RGCY 7 cut(s) 6, 24, 75, 81, 122, 131, 365
CviQI GTAC 1 cut(s) 245
DdeI CTNAG 3 cut(s) 207, 279, 509
DpnI GATC 4 cut(s) 54, 585, 597, 625
DpnII GATC 4 cut(s) 52, 583, 595, 623
Eam1104I CTCTTC 2 cut(s) 39, 641
EarI CTCTTC 2 cut(s) 39, 641
Eco130I CCWWGG 1 cut(s) 70
Eco47I GGWCC 2 cut(s) 218, 275
Eco47III AGCGCT 1 cut(s) 504
Eco57I CTGAAG 3 cut(s) 57, 299, 468
Eco88I CYCGRG 1 cut(s) 224
EcoRI GAATTC 1 cut(s) 378
EcoRII CCWGG 1 cut(s) 18
EcoT14I CCWWGG 1 cut(s) 70
EcoT22I ATGCAT 1 cut(s) 708
ErhI CCWWGG 1 cut(s) 70
Esp3I CGTCTC 1 cut(s) 678
FaeI CATG 6 cut(s) 74, 296, 386, 579, 680, 687
FaiI YATR 7 cut(s) 72, 294, 384, 437, 577, 678, 685
FaqI GGGAC 1 cut(s) 678
FatI CATG 6 cut(s) 70, 292, 382, 575, 676, 683
FauI CCCGC 1 cut(s) 276
Fnu4HI GCNGC 2 cut(s) 498, 501
FokI GGATG 5 cut(s) 121, 178, 281, 526, 670
Fsp4HI GCNGC 2 cut(s) 498, 501
FspBI CTAG 2 cut(s) 483, 727
GlaI GCGC 1 cut(s) 504
GluI GCNGC 2 cut(s) 498, 501
HaeII RGCGCY 1 cut(s) 506
HapII CCGG 2 cut(s) 216, 273
HhaI GCGC 1 cut(s) 505
Hin1I GRCGYC 1 cut(s) 198
Hin1II CATG 6 cut(s) 74, 296, 386, 579, 680, 687
Hin6I GCGC 1 cut(s) 503
HinP1I GCGC 1 cut(s) 503
HinfI GANTC 2 cut(s) 356, 608
HpaII CCGG 2 cut(s) 216, 273
HphI GGTGA 2 cut(s) 47, 643
Hpy188I TCNGA 3 cut(s) 196, 208, 318
Hpy188III TCNNGA 2 cut(s) 216, 383
Hpy99I CGWCG 3 cut(s) 107, 110, 200
HpyAV CCTTC 7 cut(s) 195, 267, 313, 348, 443, 613, 655
HpyCH4III ACNGT 2 cut(s) 631, 669
HpyCH4IV ACGT 1 cut(s) 198
HpyCH4V TGCA 7 cut(s) 191, 473, 488, 500, 523, 554, 706
HpyF10VI GCNNNNNNNGC 5 cut(s) 128, 289, 452, 494, 576
HpyF3I CTNAG 3 cut(s) 207, 279, 509
HpySE526I ACGT 1 cut(s) 198
Hsp92I GRCGYC 1 cut(s) 198
Hsp92II CATG 6 cut(s) 74, 296, 386, 579, 680, 687
HspAI GCGC 1 cut(s) 503
Kpn2I TCCGGA 1 cut(s) 215
Kzo9I GATC 4 cut(s) 52, 583, 595, 623
LguI GCTCTTC 1 cut(s) 39
LmnI GCTCC 1 cut(s) 86
LpnPI CCDG 7 cut(s) 5, 32, 48, 229, 286, 327, 603
Lsp1109I GCAGC 2 cut(s) 484, 512
LweI GCATC 4 cut(s) 200, 259, 484, 715
MaeI CTAG 2 cut(s) 483, 727
MaeII ACGT 1 cut(s) 198
MalI GATC 4 cut(s) 54, 585, 597, 625
MboI GATC 4 cut(s) 52, 583, 595, 623
MboII GAAGA 9 cut(s) 21, 50, 53, 56, 263, 503, 628, 658, 701
MflI RGATCY 2 cut(s) 595, 623
MhlI GDGCHC 1 cut(s) 443
MluCI AATT 1 cut(s) 378
MlyI GAGTC 1 cut(s) 365
MmeI TCCRAC 4 cut(s) 219, 355, 446, 623
Mph1103I ATGCAT 1 cut(s) 708
MroI TCCGGA 1 cut(s) 215
MslI CAYNNNNRTG 1 cut(s) 69
MspA1I CMGCKG 2 cut(s) 283, 446
MspI CCGG 2 cut(s) 216, 273
MspR9I CCNGG 1 cut(s) 20
MvaI CCWGG 1 cut(s) 20
MwoI GCNNNNNNNGC 5 cut(s) 128, 289, 452, 494, 576
NcoI CCATGG 1 cut(s) 70
NdeII GATC 4 cut(s) 52, 583, 595, 623
NlaIII CATG 6 cut(s) 74, 296, 386, 579, 680, 687
NlaIV GGNNCC 1 cut(s) 454
NsiI ATGCAT 1 cut(s) 708
NspI RCATGY 1 cut(s) 579
PagI TCATGA 1 cut(s) 382
PciSI GCTCTTC 1 cut(s) 39
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PfeI GAWTC 1 cut(s) 608
PkrI GCNGC 2 cut(s) 499, 502
PleI GAGTC 1 cut(s) 364
PpsI GAGTC 1 cut(s) 364
PshAI GACNNNNGTC 1 cut(s) 670
Psp6I CCWGG 1 cut(s) 18
PspGI CCWGG 1 cut(s) 18
PspN4I GGNNCC 1 cut(s) 454
PspPI GGNCC 2 cut(s) 218, 275
PstI CTGCAG 1 cut(s) 502
PsuI RGATCY 2 cut(s) 595, 623
RsaI GTAC 1 cut(s) 246
RsaNI GTAC 1 cut(s) 245
RseI CAYNNNNRTG 1 cut(s) 69
SapI GCTCTTC 1 cut(s) 39
SatI GCNGC 2 cut(s) 498, 501
Sau3AI GATC 4 cut(s) 52, 583, 595, 623
Sau96I GGNCC 2 cut(s) 218, 275
SchI GAGTC 1 cut(s) 365
ScrFI CCNGG 1 cut(s) 20
SduI GDGCHC 1 cut(s) 443
SetI ASST 9 cut(s) 8, 83, 187, 201, 340, 367, 421, 454, 545
SfaNI GCATC 4 cut(s) 200, 259, 484, 715
SfcI CTRYAG 3 cut(s) 348, 498, 591
SinI GGWCC 2 cut(s) 218, 275
SmiMI CAYNNNNRTG 1 cut(s) 69
SmlI CTYRAG 1 cut(s) 76
SmoI CTYRAG 1 cut(s) 76
Sse9I AATT 1 cut(s) 378
SsiI CCGC 5 cut(s) 58, 283, 301, 444, 579
SspMI CTAG 2 cut(s) 483, 727
StyD4I CCNGG 1 cut(s) 18
StyI CCWWGG 1 cut(s) 70
TaaI ACNGT 2 cut(s) 631, 669
TaiI ACGT 1 cut(s) 201
TaqI TCGA 1 cut(s) 712
TasI AATT 1 cut(s) 378
TfiI GAWTC 1 cut(s) 608
TscAI CASTG 2 cut(s) 91, 435
TseI GCWGC 2 cut(s) 497, 500
TspDTI ATGAA 2 cut(s) 371, 674
TspGWI ACGGA 2 cut(s) 127, 157
TspRI CASTG 2 cut(s) 91, 435
VpaK11BI GGWCC 2 cut(s) 218, 275
XapI RAATTY 1 cut(s) 378
XceI RCATGY 1 cut(s) 579
XspI CTAG 2 cut(s) 483, 727
ZraI GACGTC 1 cut(s) 199
Zsp2I ATGCAT 1 cut(s) 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.