Rmu_sc0010380.1_g000009

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010380.1
OG0014473
Physical Location & Seq
Forward (+)
19642 .. 24015
4374 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010380.1_g000009.1.cds

Sequence Viewer

Length: 708 bp
atgagcttagcactcgtccagggctattcttcctctgaagaagaagaagcagaagaaggccaaaatggcctccattaccataactcatcggacgacgacggcgacggcgacgagcacaaagtagcatcctcctccgtttacgagtcgtcccgacccaccgcctccaatacctccgctctcccgtctgcttccgatgccttctccgagatttcgggaccccctgcttttctgaacaactgcgtccaagactactccccccagcaagtgaggcatgatactcgtcacaacaaacatcgcaaggaaaagaaagacttaccagctggtgcagtcgtggtgtccaaagctcatttagttggtatccatgaacgagtaagaagtgatcttgatggtaagcaacctccaacagtagctgatgcaagcacaaatcaaggaggcaagcgtgtggcaactgtaacaaatcccagtgcagaggatgctgcagcgcttctgaggatgtgtttgcaatgtggaatacccaagaccttctccaatgcacggggaatggtctgcccagcatgtggtgatcggcctgtagacgcaactgacgactccaagaagaaggggtctacaatcaaagataaggagaagaataagaggatgaaaggccagtcatctcatgctacatggaaaagtgaaactgaaatgcagcttcgacagcaatttgactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

235

Amino Acids

25.43

Weight (kDa)

6.14

Isoelectric Point (pI)

58.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014473)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G64160
fragaria_vesca FvH4_2g12710
malus_domestica MD10G1051500.v1.1
prunus_persica Prupe.8G062400_v2.0.a1
pyrus_communis pycom10g03630
rosa_chinensis RchiOBHm_Chr6g0273461
rosa_laevigata RLG00000013615
rosa_multiflora Rmu_co8520659.1_g000001 Rmu_sc0005891.1_g000032 Rmu_sc0010380.1_g000009
rosa_roxburghii Rroxscaffold_7G00195310
rosa_rugosa Rorug06G0075500
rosa_samantha Rh6AG190200 Rh6BG193700 Rh6CG193200 Rh6DG184800
rosa_wichuraiana Rw6G016640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 557
AccBSI CCGCTC 1 cut(s) 176
AccI GTMKAC 2 cut(s) 573, 605
AciI CCGC 2 cut(s) 159, 174
AcuI CTGAAG 1 cut(s) 57
AfeI AGCGCT 1 cut(s) 483
AfiI CCNNNNNNNGG 2 cut(s) 534, 557
AjnI CCWGG 1 cut(s) 18
AluBI AGCT 5 cut(s) 6, 320, 344, 410, 688
AluI AGCT 5 cut(s) 6, 320, 344, 410, 688
Alw21I GWGCWC 1 cut(s) 117
AlwNI CAGNNNCTG 1 cut(s) 410
Aor51HI AGCGCT 1 cut(s) 483
AoxI GGCC 4 cut(s) 58, 67, 566, 643
ApeKI GCWGC 3 cut(s) 476, 479, 685
AspLEI GCGC 1 cut(s) 484
AspS9I GGNCC 1 cut(s) 215
AsuHPI GGTGA 1 cut(s) 572
AvaII GGWCC 1 cut(s) 215
Bbv12I GWGCWC 1 cut(s) 117
BbvI GCAGC 3 cut(s) 463, 491, 697
BccI CCATC 1 cut(s) 380
BceAI ACGGC 2 cut(s) 115, 121
BcgI CGANNNNNNTGC 2 cut(s) 260, 294
BciT130I CCWGG 1 cut(s) 20
BciVI GTATCC 1 cut(s) 368
BfaI CTAG 1 cut(s) 706
BfmI CTRYAG 2 cut(s) 477, 570
BfoI RGCGCY 1 cut(s) 485
BfuI GTATCC 1 cut(s) 368
BglI GCCNNNNNGGC 1 cut(s) 66
BisI GCNGC 3 cut(s) 477, 480, 686
BlpI GCTNAGC 1 cut(s) 7
BlsI GCNGC 3 cut(s) 478, 481, 687
Bme1390I CCNGG 1 cut(s) 20
Bme18I GGWCC 1 cut(s) 215
BmgT120I GGNCC 1 cut(s) 215
BmiI GGNNCC 2 cut(s) 216, 217
BmrFI CCNGG 1 cut(s) 20
BmrI ACTGGG 1 cut(s) 456
BmsI GCATC 4 cut(s) 134, 184, 403, 463
BmuI ACTGGG 1 cut(s) 456
Bpu1102I GCTNAGC 1 cut(s) 7
BsaJI CCNNGG 1 cut(s) 19
Bsc4I CCNNNNNNNGG 2 cut(s) 534, 557
Bse1I ACTGG 2 cut(s) 462, 646
Bse3DI GCAATG 1 cut(s) 509
BseBI CCWGG 1 cut(s) 20
BseDI CCNNGG 1 cut(s) 19
BseGI GGATG 4 cut(s) 125, 478, 498, 642
BseLI CCNNNNNNNGG 2 cut(s) 534, 557
BseMI GCAATG 1 cut(s) 509
BseMII CTCAG 1 cut(s) 479
BseNI ACTGG 2 cut(s) 462, 646
BseRI GAGGAG 1 cut(s) 121
BseXI GCAGC 3 cut(s) 463, 491, 697
BseYI CCCAGC 2 cut(s) 258, 550
BsgI GTGCAG 2 cut(s) 345, 486
BshFI GGCC 4 cut(s) 60, 69, 568, 645
BsiHKAI GWGCWC 1 cut(s) 117
BslFI GGGAC 2 cut(s) 133, 228
BslI CCNNNNNNNGG 2 cut(s) 534, 557
BsmFI GGGAC 2 cut(s) 133, 228
BsnI GGCC 4 cut(s) 60, 69, 568, 645
Bsp1286I GDGCHC 1 cut(s) 117
Bsp143I GATC 2 cut(s) 379, 562
Bsp1720I GCTNAGC 1 cut(s) 7
BspACI CCGC 2 cut(s) 159, 174
BspANI GGCC 4 cut(s) 60, 69, 568, 645
BspCNI CTCAG 1 cut(s) 480
BspLI GGNNCC 2 cut(s) 216, 217
BspMAI CTGCAG 1 cut(s) 481
BsrBI CCGCTC 1 cut(s) 176
BsrDI GCAATG 1 cut(s) 509
BsrI ACTGG 2 cut(s) 462, 646
BssECI CCNNGG 1 cut(s) 19
BssMI GATC 2 cut(s) 379, 562
Bst2UI CCWGG 1 cut(s) 20
Bst4CI ACNGT 2 cut(s) 406, 451
BstAPI GCANNNNNTGC 1 cut(s) 473
BstC8I GCNNGC 2 cut(s) 418, 437
BstDEI CTNAG 2 cut(s) 7, 488
BstF5I GGATG 4 cut(s) 125, 478, 498, 642
BstH2I RGCGCY 1 cut(s) 485
BstHHI GCGC 1 cut(s) 484
BstKTI GATC 2 cut(s) 382, 565
BstMBI GATC 2 cut(s) 379, 562
BstMWI GCNNNNNNNGC 5 cut(s) 66, 194, 268, 473, 694
BstNI CCWGG 1 cut(s) 20
BstNSI RCATGY 1 cut(s) 558
BstSCI CCNGG 1 cut(s) 18
BstSFI CTRYAG 2 cut(s) 477, 570
BstV1I GCAGC 3 cut(s) 463, 491, 697
BsuI GTATCC 1 cut(s) 368
BsuRI GGCC 4 cut(s) 60, 69, 568, 645
BtgZI GCGATG 1 cut(s) 278
BtsCI GGATG 4 cut(s) 125, 478, 498, 642
BtsIMutI CAGTG 1 cut(s) 469
Cac8I GCNNGC 2 cut(s) 418, 437
CaiI CAGNNNCTG 1 cut(s) 410
CfoI GCGC 1 cut(s) 484
Cfr13I GGNCC 1 cut(s) 215
CseI GACGC 2 cut(s) 229, 584
CviAII CATG 5 cut(s) 272, 362, 555, 656, 663
DdeI CTNAG 2 cut(s) 7, 488
DpnI GATC 2 cut(s) 381, 564
DpnII GATC 2 cut(s) 379, 562
Eco47I GGWCC 1 cut(s) 215
Eco47III AGCGCT 1 cut(s) 483
Eco57I CTGAAG 1 cut(s) 57
EcoO109I RGGNCCY 1 cut(s) 215
EcoRII CCWGG 1 cut(s) 18
FaeI CATG 5 cut(s) 275, 365, 558, 659, 666
FaiI YATR 6 cut(s) 81, 273, 363, 556, 657, 664
FalI AAGNNNNNCTT 2 cut(s) 296, 328
FaqI GGGAC 2 cut(s) 133, 228
FatI CATG 5 cut(s) 271, 361, 554, 655, 662
FblI GTMKAC 2 cut(s) 573, 605
Fnu4HI GCNGC 3 cut(s) 477, 480, 686
FokI GGATG 4 cut(s) 112, 485, 505, 649
Fsp4HI GCNGC 3 cut(s) 477, 480, 686
FspBI CTAG 1 cut(s) 706
GlaI GCGC 1 cut(s) 483
GluI GCNGC 3 cut(s) 477, 480, 686
GsaI CCCAGC 2 cut(s) 262, 554
HaeII RGCGCY 1 cut(s) 485
HaeIII GGCC 4 cut(s) 60, 69, 568, 645
HgaI GACGC 2 cut(s) 229, 584
HhaI GCGC 1 cut(s) 484
Hin1II CATG 5 cut(s) 275, 365, 558, 659, 666
Hin6I GCGC 1 cut(s) 482
HinP1I GCGC 1 cut(s) 482
HinfI GANTC 2 cut(s) 143, 587
HphI GGTGA 1 cut(s) 572
Hpy166II GTNNAC 3 cut(s) 139, 574, 606
Hpy188I TCNGA 6 cut(s) 37, 91, 193, 205, 231, 489
Hpy188III TCNNGA 3 cut(s) 150, 213, 383
Hpy8I GTNNAC 3 cut(s) 139, 574, 606
Hpy99I CGWCG 4 cut(s) 98, 101, 107, 113
HpyAV CCTTC 4 cut(s) 50, 208, 532, 592
HpyCH4III ACNGT 2 cut(s) 406, 451
HpyCH4V TGCA 7 cut(s) 326, 416, 467, 479, 502, 533, 685
HpyF10VI GCNNNNNNNGC 5 cut(s) 66, 194, 268, 473, 694
HpyF3I CTNAG 2 cut(s) 7, 488
Hsp92II CATG 5 cut(s) 275, 365, 558, 659, 666
HspAI GCGC 1 cut(s) 482
KflI GGGWCCC 1 cut(s) 215
Kzo9I GATC 2 cut(s) 379, 562
Lsp1109I GCAGC 3 cut(s) 463, 491, 697
LweI GCATC 4 cut(s) 134, 184, 403, 463
MaeI CTAG 1 cut(s) 706
MaeIII GTNAC 2 cut(s) 281, 451
MalI GATC 2 cut(s) 381, 564
MbiI CCGCTC 1 cut(s) 176
MboI GATC 2 cut(s) 379, 562
MboII GAAGA 7 cut(s) 21, 50, 53, 56, 65, 607, 637
MhlI GDGCHC 1 cut(s) 117
MluCI AATT 1 cut(s) 698
MlyI GAGTC 2 cut(s) 152, 581
MmeI TCCRAC 1 cut(s) 425
MspA1I CMGCKG 1 cut(s) 320
MspR9I CCNGG 1 cut(s) 20
MvaI CCWGG 1 cut(s) 20
MwoI GCNNNNNNNGC 5 cut(s) 66, 194, 268, 473, 694
NdeII GATC 2 cut(s) 379, 562
NlaIII CATG 5 cut(s) 275, 365, 558, 659, 666
NlaIV GGNNCC 2 cut(s) 216, 217
NmuCI GTSAC 1 cut(s) 281
NspI RCATGY 1 cut(s) 558
PcsI WCGNNNNNNNCGW 3 cut(s) 99, 105, 582
PflMI CCANNNNNTGG 1 cut(s) 557
PkrI GCNGC 3 cut(s) 478, 481, 687
PleI GAGTC 2 cut(s) 151, 581
PpsI GAGTC 2 cut(s) 151, 581
PpuMI RGGWCCY 1 cut(s) 215
Psp5II RGGWCCY 1 cut(s) 215
Psp6I CCWGG 1 cut(s) 18
PspFI CCCAGC 2 cut(s) 258, 550
PspGI CCWGG 1 cut(s) 18
PspN4I GGNNCC 2 cut(s) 216, 217
PspPI GGNCC 1 cut(s) 215
PspPPI RGGWCCY 1 cut(s) 215
PstI CTGCAG 1 cut(s) 481
PstNI CAGNNNCTG 1 cut(s) 410
PvuII CAGCTG 1 cut(s) 320
SatI GCNGC 3 cut(s) 477, 480, 686
Sau3AI GATC 2 cut(s) 379, 562
Sau96I GGNCC 1 cut(s) 215
SchI GAGTC 2 cut(s) 152, 581
ScrFI CCNGG 1 cut(s) 20
SduI GDGCHC 1 cut(s) 117
SetI ASST 8 cut(s) 8, 173, 322, 346, 400, 412, 524, 690
SfaNI GCATC 4 cut(s) 134, 184, 403, 463
SfcI CTRYAG 2 cut(s) 477, 570
SfiI GGCCNNNNNGGCC 1 cut(s) 66
SinI GGWCC 1 cut(s) 215
Sse9I AATT 1 cut(s) 698
SsiI CCGC 2 cut(s) 159, 174
SspMI CTAG 1 cut(s) 706
StyD4I CCNGG 1 cut(s) 18
TaaI ACNGT 2 cut(s) 406, 451
TaqI TCGA 1 cut(s) 691
TasI AATT 1 cut(s) 698
TscAI CASTG 1 cut(s) 469
TseFI GTSAC 1 cut(s) 281
TseI GCWGC 3 cut(s) 476, 479, 685
Tsp45I GTSAC 1 cut(s) 281
TspDTI ATGAA 2 cut(s) 378, 653
TspGWI ACGGA 1 cut(s) 124
TspRI CASTG 1 cut(s) 469
Van91I CCANNNNNTGG 1 cut(s) 557
VpaK11BI GGWCC 1 cut(s) 215
XceI RCATGY 1 cut(s) 558
XmiI GTMKAC 2 cut(s) 573, 605
XspI CTAG 1 cut(s) 706
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.