RLG00000013615

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0014473
Physical Location & Seq
Reverse (-)
34059039 .. 34063107
4069 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013615

Sequence Viewer

Length: 726 bp
ATGAGCTTAGCACTCGTCCAGGGCTATTCTTCCTCTGAAGAAGAAGAAGAAGAAGAAGCAGAAGAAGGCCATAATGGCCTCCATTACCATAACTCATCGGACGACGACGGCGCCGACGGCGACGGCGTTGAGAACAAAGCAGCATCCTCCTCCGTTTATGAGTCGTCCCGACCCACCTCGTCCAACACCTCCGCCCTCCCGTCTGCTTCCGACGCCTTCTCCGAGATTTCGGGACCCCCTGCGTTTCTGAACAACTGCGTCCAAGAATACTCCCCCCAGCAAGTGAGGCATGCTACTCGTCACAACAAACATCGCAAGGAAAAGAAAGACTTACCAGCTGGTGCAGTAGTGGAGTCCAAAGCTCATTTAGTTGGTATCCATGAACGAGTAAGAAGTGATCTTGATGGTAAGCAACCTCCAACAGTAGCTGATGCAAGCACAAATCAAGGAGGCAAGCGTGTGGCAACTGTAACAAATCCCAGTGCAGAGGATGCTGCAGCGCTTCTGAGGATGTGTTTGCAATGTGGAATACCCAAGACCTTCTCCAATGCACGGGGAATGGTCTGCCCAGCATGTGGTGATCGGCCTGTAGAGGCAACCGACGACTCCAAGAAGAAAGGGTCTACAATCAAAGATAAGGAGAAGAATAAGAGGATGAAAGGCCAGTCATCTCATGCTACATGGAAAAGTGAAACTGAAATGCAGCTTCGACAGCAATTTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

242

Amino Acids

26.03

Weight (kDa)

5.75

Isoelectric Point (pI)

65.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014473)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G64160
fragaria_vesca FvH4_2g12710
malus_domestica MD10G1051500.v1.1
prunus_persica Prupe.8G062400_v2.0.a1
pyrus_communis pycom10g03630
rosa_chinensis RchiOBHm_Chr6g0273461
rosa_laevigata RLG00000013615
rosa_multiflora Rmu_co8520659.1_g000001 Rmu_sc0005891.1_g000032 Rmu_sc0010380.1_g000009
rosa_roxburghii Rroxscaffold_7G00195310
rosa_rugosa Rorug06G0075500
rosa_samantha Rh6AG190200 Rh6BG193700 Rh6CG193200 Rh6DG184800
rosa_wichuraiana Rw6G016640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 110
AccB7I CCANNNNNTGG 1 cut(s) 575
AccI GTMKAC 1 cut(s) 623
AciI CCGC 1 cut(s) 192
AcuI CTGAAG 1 cut(s) 57
AcyI GRCGYC 2 cut(s) 111, 213
AfeI AGCGCT 1 cut(s) 501
AfiI CCNNNNNNNGG 2 cut(s) 552, 575
AjnI CCWGG 1 cut(s) 18
AluBI AGCT 5 cut(s) 6, 338, 362, 428, 706
AluI AGCT 5 cut(s) 6, 338, 362, 428, 706
AlwNI CAGNNNCTG 1 cut(s) 428
Aor51HI AGCGCT 1 cut(s) 501
AoxI GGCC 4 cut(s) 67, 76, 584, 661
ApeKI GCWGC 4 cut(s) 140, 494, 497, 703
AspLEI GCGC 2 cut(s) 113, 502
AspS9I GGNCC 1 cut(s) 233
AsuHPI GGTGA 1 cut(s) 590
AvaII GGWCC 1 cut(s) 233
BanI GGYRCC 1 cut(s) 110
BbvI GCAGC 4 cut(s) 152, 481, 509, 715
BccI CCATC 1 cut(s) 398
BceAI ACGGC 3 cut(s) 124, 133, 139
BcgI CGANNNNNNTGC 2 cut(s) 278, 312
BciT130I CCWGG 1 cut(s) 20
BciVI GTATCC 1 cut(s) 386
BfaI CTAG 1 cut(s) 724
BfmI CTRYAG 2 cut(s) 495, 588
BfoI RGCGCY 2 cut(s) 114, 503
BfuI GTATCC 1 cut(s) 386
BglI GCCNNNNNGGC 1 cut(s) 75
BisI GCNGC 4 cut(s) 141, 495, 498, 704
BlpI GCTNAGC 1 cut(s) 7
BlsI GCNGC 4 cut(s) 142, 496, 499, 705
Bme1390I CCNGG 1 cut(s) 20
Bme18I GGWCC 1 cut(s) 233
BmgT120I GGNCC 1 cut(s) 233
BmiI GGNNCC 3 cut(s) 112, 234, 235
BmrFI CCNGG 1 cut(s) 20
BmrI ACTGGG 1 cut(s) 474
BmsI GCATC 3 cut(s) 152, 421, 481
BmuI ACTGGG 1 cut(s) 474
Bpu1102I GCTNAGC 1 cut(s) 7
BsaHI GRCGYC 2 cut(s) 111, 213
BsaJI CCNNGG 1 cut(s) 19
BsaXI ACNNNNNCTCC 2 cut(s) 203, 233
Bsc4I CCNNNNNNNGG 2 cut(s) 552, 575
Bse1I ACTGG 2 cut(s) 480, 664
Bse3DI GCAATG 1 cut(s) 527
BseBI CCWGG 1 cut(s) 20
BseDI CCNNGG 1 cut(s) 19
BseGI GGATG 4 cut(s) 143, 496, 516, 660
BseLI CCNNNNNNNGG 2 cut(s) 552, 575
BseMI GCAATG 1 cut(s) 527
BseMII CTCAG 1 cut(s) 497
BseNI ACTGG 2 cut(s) 480, 664
BseRI GAGGAG 1 cut(s) 139
BseXI GCAGC 4 cut(s) 152, 481, 509, 715
BseYI CCCAGC 2 cut(s) 276, 568
BsgI GTGCAG 2 cut(s) 363, 504
BshFI GGCC 4 cut(s) 69, 78, 586, 663
BshNI GGYRCC 1 cut(s) 110
BslFI GGGAC 2 cut(s) 151, 246
BslI CCNNNNNNNGG 2 cut(s) 552, 575
BsmFI GGGAC 2 cut(s) 151, 246
BsnI GGCC 4 cut(s) 69, 78, 586, 663
Bsp143I GATC 2 cut(s) 397, 580
Bsp1720I GCTNAGC 1 cut(s) 7
BspACI CCGC 1 cut(s) 192
BspANI GGCC 4 cut(s) 69, 78, 586, 663
BspCNI CTCAG 1 cut(s) 498
BspLI GGNNCC 3 cut(s) 112, 234, 235
BspMAI CTGCAG 1 cut(s) 499
BspT107I GGYRCC 1 cut(s) 110
BsrDI GCAATG 1 cut(s) 527
BsrI ACTGG 2 cut(s) 480, 664
BssECI CCNNGG 1 cut(s) 19
BssMI GATC 2 cut(s) 397, 580
BssNI GRCGYC 2 cut(s) 111, 213
Bst2UI CCWGG 1 cut(s) 20
Bst4CI ACNGT 2 cut(s) 424, 469
BstACI GRCGYC 2 cut(s) 111, 213
BstAPI GCANNNNNTGC 1 cut(s) 491
BstC8I GCNNGC 3 cut(s) 291, 436, 455
BstDEI CTNAG 2 cut(s) 7, 506
BstF5I GGATG 4 cut(s) 143, 496, 516, 660
BstH2I RGCGCY 2 cut(s) 114, 503
BstHHI GCGC 2 cut(s) 113, 502
BstKTI GATC 2 cut(s) 400, 583
BstMBI GATC 2 cut(s) 397, 580
BstMWI GCNNNNNNNGC 6 cut(s) 75, 117, 212, 286, 491, 712
BstNI CCWGG 1 cut(s) 20
BstNSI RCATGY 2 cut(s) 293, 576
BstSCI CCNGG 1 cut(s) 18
BstSFI CTRYAG 2 cut(s) 495, 588
BstV1I GCAGC 4 cut(s) 152, 481, 509, 715
BsuI GTATCC 1 cut(s) 386
BsuRI GGCC 4 cut(s) 69, 78, 586, 663
BtgZI GCGATG 1 cut(s) 296
BtsCI GGATG 4 cut(s) 143, 496, 516, 660
BtsIMutI CAGTG 1 cut(s) 487
Cac8I GCNNGC 3 cut(s) 291, 436, 455
CaiI CAGNNNCTG 1 cut(s) 428
CfoI GCGC 2 cut(s) 113, 502
Cfr13I GGNCC 1 cut(s) 233
CseI GACGC 2 cut(s) 221, 247
CviAII CATG 5 cut(s) 290, 380, 573, 674, 681
DdeI CTNAG 2 cut(s) 7, 506
DinI GGCGCC 1 cut(s) 112
DpnI GATC 2 cut(s) 399, 582
DpnII GATC 2 cut(s) 397, 580
EciI GGCGGA 1 cut(s) 181
Eco47I GGWCC 1 cut(s) 233
Eco47III AGCGCT 1 cut(s) 501
Eco57I CTGAAG 1 cut(s) 57
EcoO109I RGGNCCY 1 cut(s) 233
EcoRII CCWGG 1 cut(s) 18
EgeI GGCGCC 1 cut(s) 112
EheI GGCGCC 1 cut(s) 112
FaeI CATG 5 cut(s) 293, 383, 576, 677, 684
FaiI YATR 8 cut(s) 72, 90, 159, 291, 381, 574, 675, 682
FalI AAGNNNNNCTT 2 cut(s) 314, 346
FaqI GGGAC 2 cut(s) 151, 246
FatI CATG 5 cut(s) 289, 379, 572, 673, 680
FblI GTMKAC 1 cut(s) 623
Fnu4HI GCNGC 4 cut(s) 141, 495, 498, 704
FokI GGATG 4 cut(s) 130, 503, 523, 667
Fsp4HI GCNGC 4 cut(s) 141, 495, 498, 704
FspBI CTAG 1 cut(s) 724
GlaI GCGC 2 cut(s) 112, 501
GluI GCNGC 4 cut(s) 141, 495, 498, 704
GsaI CCCAGC 2 cut(s) 280, 572
HaeII RGCGCY 2 cut(s) 114, 503
HaeIII GGCC 4 cut(s) 69, 78, 586, 663
HgaI GACGC 2 cut(s) 221, 247
HhaI GCGC 2 cut(s) 113, 502
Hin1I GRCGYC 2 cut(s) 111, 213
Hin1II CATG 5 cut(s) 293, 383, 576, 677, 684
Hin6I GCGC 2 cut(s) 111, 500
HinP1I GCGC 2 cut(s) 111, 500
HinfI GANTC 3 cut(s) 161, 353, 605
HphI GGTGA 1 cut(s) 590
Hpy166II GTNNAC 1 cut(s) 624
Hpy188I TCNGA 6 cut(s) 37, 100, 211, 223, 249, 507
Hpy188III TCNNGA 3 cut(s) 168, 231, 401
Hpy8I GTNNAC 1 cut(s) 624
Hpy99I CGWCG 6 cut(s) 107, 110, 119, 125, 215, 605
HpyAV CCTTC 3 cut(s) 59, 226, 550
HpyCH4III ACNGT 2 cut(s) 424, 469
HpyCH4V TGCA 7 cut(s) 344, 434, 485, 497, 520, 551, 703
HpyF10VI GCNNNNNNNGC 6 cut(s) 75, 117, 212, 286, 491, 712
HpyF3I CTNAG 2 cut(s) 7, 506
Hsp92I GRCGYC 2 cut(s) 111, 213
Hsp92II CATG 5 cut(s) 293, 383, 576, 677, 684
HspAI GCGC 2 cut(s) 111, 500
KasI GGCGCC 1 cut(s) 110
KflI GGGWCCC 1 cut(s) 233
Kzo9I GATC 2 cut(s) 397, 580
Lsp1109I GCAGC 4 cut(s) 152, 481, 509, 715
LweI GCATC 3 cut(s) 152, 421, 481
MaeI CTAG 1 cut(s) 724
MaeIII GTNAC 2 cut(s) 299, 469
MalI GATC 2 cut(s) 399, 582
MboI GATC 2 cut(s) 397, 580
MluCI AATT 1 cut(s) 716
Mly113I GGCGCC 1 cut(s) 111
MlyI GAGTC 3 cut(s) 170, 362, 599
MmeI TCCRAC 3 cut(s) 207, 234, 443
MspA1I CMGCKG 1 cut(s) 338
MspR9I CCNGG 1 cut(s) 20
MvaI CCWGG 1 cut(s) 20
MwoI GCNNNNNNNGC 6 cut(s) 75, 117, 212, 286, 491, 712
NarI GGCGCC 1 cut(s) 111
NdeII GATC 2 cut(s) 397, 580
NlaIII CATG 5 cut(s) 293, 383, 576, 677, 684
NlaIV GGNNCC 3 cut(s) 112, 234, 235
NmuCI GTSAC 1 cut(s) 299
NspI RCATGY 2 cut(s) 293, 576
PaeI GCATGC 1 cut(s) 293
PcsI WCGNNNNNNNCGW 3 cut(s) 111, 123, 219
PflMI CCANNNNNTGG 1 cut(s) 575
PkrI GCNGC 4 cut(s) 142, 496, 499, 705
PleI GAGTC 3 cut(s) 169, 361, 599
PluTI GGCGCC 1 cut(s) 114
PpsI GAGTC 3 cut(s) 169, 361, 599
PpuMI RGGWCCY 1 cut(s) 233
Psp5II RGGWCCY 1 cut(s) 233
Psp6I CCWGG 1 cut(s) 18
PspFI CCCAGC 2 cut(s) 276, 568
PspGI CCWGG 1 cut(s) 18
PspN4I GGNNCC 3 cut(s) 112, 234, 235
PspPI GGNCC 1 cut(s) 233
PspPPI RGGWCCY 1 cut(s) 233
PstI CTGCAG 1 cut(s) 499
PstNI CAGNNNCTG 1 cut(s) 428
PvuII CAGCTG 1 cut(s) 338
SatI GCNGC 4 cut(s) 141, 495, 498, 704
Sau3AI GATC 2 cut(s) 397, 580
Sau96I GGNCC 1 cut(s) 233
SchI GAGTC 3 cut(s) 170, 362, 599
ScrFI CCNGG 1 cut(s) 20
SetI ASST 9 cut(s) 8, 179, 191, 340, 364, 418, 430, 542, 708
SfaNI GCATC 3 cut(s) 152, 421, 481
SfcI CTRYAG 2 cut(s) 495, 588
SfiI GGCCNNNNNGGCC 1 cut(s) 75
SfoI GGCGCC 1 cut(s) 112
SinI GGWCC 1 cut(s) 233
SphI GCATGC 1 cut(s) 293
Sse9I AATT 1 cut(s) 716
SsiI CCGC 1 cut(s) 192
SspDI GGCGCC 1 cut(s) 110
SspMI CTAG 1 cut(s) 724
StyD4I CCNGG 1 cut(s) 18
TaaI ACNGT 2 cut(s) 424, 469
TaqI TCGA 1 cut(s) 709
TasI AATT 1 cut(s) 716
TscAI CASTG 1 cut(s) 487
TseFI GTSAC 1 cut(s) 299
TseI GCWGC 4 cut(s) 140, 494, 497, 703
Tsp45I GTSAC 1 cut(s) 299
TspDTI ATGAA 2 cut(s) 396, 671
TspGWI ACGGA 1 cut(s) 142
TspRI CASTG 1 cut(s) 487
Van91I CCANNNNNTGG 1 cut(s) 575
VpaK11BI GGWCC 1 cut(s) 233
XceI RCATGY 2 cut(s) 293, 576
XmiI GTMKAC 1 cut(s) 623
XspI CTAG 1 cut(s) 724
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.