Prupe.8G062400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0014473
Physical Location & Seq
Reverse (-)
8975190 .. 8978502
3313 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G062400.1

Sequence Viewer

Length: 729 bp
ATGAGCTTGGCGTTCCTCCAGGGCTATTCTTCCGCTGAAGAAGAAGAAGAAGCCCAAAATCACCGCCTCCATTACCAAAACTCAAACTCGTCGGACGACGACGAAGATGGTGACCAAAGTCACAAACCCAAATCCGTCTTTGACGTTCCCAAACCTCCTTCCTCTTCTATTGCCTCTGGCCTTCCTTCTGCATCTGACGTCTTCTCCGAGATTTGTGGACCGCCCGATTTTCTCAATAACTGCGTACAAGAAGACGGTTCTACGAGGGATGACGGTCCCCAGAAAGGGAGGCATGGTGCCCGGAACGCCAAACTTCGCAAGGACAAGAAAGATTTACCTGCTGGTGCTGTAGTGGAGTCCAAAGCTCAGTTAGTTGGAATCCATGAACGAGTAAGAAGTGATTTTGCGGGTAACCAACCTCCAACATCAATAGTTACAAGCACGGCTCAAGGTGGCAAGCGTCTGCCAACTGCAACGAATCCTAGTGCAGAGGATGCTGCAGAGCTTCTGAGGATGTGTTTGCAATGTGGAATACCCAAGACCTACTCCAATGCACAGGGAATGGTCTGCCCAGCTTGCGGTGATCGTCCTGTAGACACAACCAACGATTCCAAGAAGAAGGGATCTACCATCAAAGATAAGGAGAAGAGTAAGAGGATGAAGGGCCAGTCGTCTCATGGTACATGGAAAAGTGAAACTGAAATGCAGCTTCGGCAGCAGTTTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

243

Amino Acids

26.22

Weight (kDa)

6.1

Isoelectric Point (pI)

52.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014473)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G64160
fragaria_vesca FvH4_2g12710
malus_domestica MD10G1051500.v1.1
prunus_persica Prupe.8G062400_v2.0.a1
pyrus_communis pycom10g03630
rosa_chinensis RchiOBHm_Chr6g0273461
rosa_laevigata RLG00000013615
rosa_multiflora Rmu_co8520659.1_g000001 Rmu_sc0005891.1_g000032 Rmu_sc0010380.1_g000009
rosa_roxburghii Rroxscaffold_7G00195310
rosa_rugosa Rorug06G0075500
rosa_samantha Rh6AG190200 Rh6BG193700 Rh6CG193200 Rh6DG184800
rosa_wichuraiana Rw6G016640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 201
Acc36I ACCTGC 1 cut(s) 346
AccB1I GGYRCC 1 cut(s) 296
AccI GTMKAC 1 cut(s) 594
AciI CCGC 5 cut(s) 33, 64, 221, 407, 579
AclWI GGATC 1 cut(s) 631
AcuI CTGAAG 1 cut(s) 57
AcyI GRCGYC 1 cut(s) 198
AfaI GTAC 2 cut(s) 246, 682
AfiI CCNNNNNNNGG 3 cut(s) 284, 285, 578
AjnI CCWGG 1 cut(s) 18
AluBI AGCT 5 cut(s) 6, 365, 505, 575, 709
AluI AGCT 5 cut(s) 6, 365, 505, 575, 709
Alw26I GTCTC 1 cut(s) 678
AlwI GGATC 1 cut(s) 631
AoxI GGCC 2 cut(s) 178, 664
ApeKI GCWGC 3 cut(s) 497, 706, 715
AspS9I GGNCC 3 cut(s) 218, 275, 664
AsuC2I CCSGG 1 cut(s) 301
AsuHPI GGTGA 3 cut(s) 53, 122, 593
AvaII GGWCC 2 cut(s) 218, 275
BaeGI GKGCMC 1 cut(s) 301
BanI GGYRCC 1 cut(s) 296
BbsI GAAGAC 2 cut(s) 193, 258
BbvI GCAGC 2 cut(s) 484, 718
BccI CCATC 2 cut(s) 101, 638
BceAI ACGGC 1 cut(s) 459
BciT130I CCWGG 1 cut(s) 20
BcnI CCSGG 1 cut(s) 301
BcoDI GTCTC 1 cut(s) 678
BfaI CTAG 2 cut(s) 483, 727
BfmI CTRYAG 3 cut(s) 348, 498, 591
BfuAI ACCTGC 1 cut(s) 346
BisI GCNGC 3 cut(s) 498, 707, 716
BlsI GCNGC 3 cut(s) 499, 708, 717
Bme1390I CCNGG 2 cut(s) 20, 301
Bme18I GGWCC 2 cut(s) 218, 275
BmgT120I GGNCC 3 cut(s) 218, 275, 664
BmiI GGNNCC 2 cut(s) 277, 298
BmrFI CCNGG 2 cut(s) 20, 301
BmsI GCATC 2 cut(s) 200, 484
BoxI GACNNNNGTC 1 cut(s) 117
BpiI GAAGAC 2 cut(s) 193, 258
BpuEI CTTGAG 1 cut(s) 432
BpuMI CCSGG 1 cut(s) 301
BsaHI GRCGYC 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 19
BsaXI ACNNNNNCTCC 4 cut(s) 188, 218, 280, 310
Bsc4I CCNNNNNNNGG 3 cut(s) 284, 285, 578
Bse1I ACTGG 1 cut(s) 667
Bse3DI GCAATG 1 cut(s) 530
BseBI CCWGG 1 cut(s) 20
BseDI CCNNGG 1 cut(s) 19
BseGI GGATG 4 cut(s) 274, 499, 519, 663
BseLI CCNNNNNNNGG 3 cut(s) 284, 285, 578
BseMI GCAATG 1 cut(s) 530
BseMII CTCAG 2 cut(s) 380, 500
BseNI ACTGG 1 cut(s) 667
BseSI GKGCMC 1 cut(s) 301
BseXI GCAGC 2 cut(s) 484, 718
BseYI CCCAGC 1 cut(s) 571
BsgI GTGCAG 1 cut(s) 507
BshFI GGCC 2 cut(s) 180, 666
BshNI GGYRCC 1 cut(s) 296
BsiSI CCGG 1 cut(s) 301
BslFI GGGAC 1 cut(s) 261
BslI CCNNNNNNNGG 3 cut(s) 284, 285, 578
BsmAI GTCTC 1 cut(s) 678
BsmBI CGTCTC 1 cut(s) 678
BsmFI GGGAC 1 cut(s) 261
BsnI GGCC 2 cut(s) 180, 666
Bsp1286I GDGCHC 1 cut(s) 301
Bsp143I GATC 2 cut(s) 583, 623
BspACI CCGC 5 cut(s) 33, 64, 221, 407, 579
BspANI GGCC 2 cut(s) 180, 666
BspCNI CTCAG 2 cut(s) 379, 501
BspLI GGNNCC 2 cut(s) 277, 298
BspMAI CTGCAG 1 cut(s) 502
BspMI ACCTGC 1 cut(s) 346
BspPI GGATC 1 cut(s) 631
BspT107I GGYRCC 1 cut(s) 296
BsrDI GCAATG 1 cut(s) 530
BsrI ACTGG 1 cut(s) 667
BssECI CCNNGG 1 cut(s) 19
BssMI GATC 2 cut(s) 583, 623
BssNI GRCGYC 1 cut(s) 198
Bst2UI CCWGG 1 cut(s) 20
Bst4CI ACNGT 2 cut(s) 257, 275
Bst6I CTCTTC 2 cut(s) 169, 641
BstACI GRCGYC 1 cut(s) 198
BstAPI GCANNNNNTGC 1 cut(s) 494
BstC8I GCNNGC 2 cut(s) 458, 577
BstDEI CTNAG 2 cut(s) 366, 509
BstEII GGTNACC 2 cut(s) 110, 410
BstF5I GGATG 4 cut(s) 274, 499, 519, 663
BstKTI GATC 2 cut(s) 586, 626
BstMAI GTCTC 1 cut(s) 678
BstMBI GATC 2 cut(s) 583, 623
BstMWI GCNNNNNNNGC 5 cut(s) 305, 494, 576, 712, 715
BstNI CCWGG 1 cut(s) 20
BstPAI GACNNNNGTC 1 cut(s) 117
BstPI GGTNACC 2 cut(s) 110, 410
BstSCI CCNGG 2 cut(s) 18, 299
BstSFI CTRYAG 3 cut(s) 348, 498, 591
BstSLI GKGCMC 1 cut(s) 301
BstV1I GCAGC 2 cut(s) 484, 718
BstV2I GAAGAC 2 cut(s) 193, 258
BstX2I RGATCY 1 cut(s) 623
BstYI RGATCY 1 cut(s) 623
BsuRI GGCC 2 cut(s) 180, 666
BtsCI GGATG 4 cut(s) 274, 499, 519, 663
BveI ACCTGC 1 cut(s) 346
Cac8I GCNNGC 2 cut(s) 458, 577
Cfr13I GGNCC 3 cut(s) 218, 275, 664
CseI GACGC 1 cut(s) 449
Csp6I GTAC 2 cut(s) 245, 681
CviAII CATG 4 cut(s) 293, 383, 677, 684
CviQI GTAC 2 cut(s) 245, 681
DdeI CTNAG 2 cut(s) 366, 509
DpnI GATC 2 cut(s) 585, 625
DpnII GATC 2 cut(s) 583, 623
Eam1104I CTCTTC 2 cut(s) 169, 641
EarI CTCTTC 2 cut(s) 169, 641
Eco47I GGWCC 2 cut(s) 218, 275
Eco57I CTGAAG 1 cut(s) 57
Eco91I GGTNACC 2 cut(s) 110, 410
EcoO65I GGTNACC 2 cut(s) 110, 410
EcoRII CCWGG 1 cut(s) 18
Esp3I CGTCTC 1 cut(s) 678
FaeI CATG 4 cut(s) 296, 386, 680, 687
FaiI YATR 4 cut(s) 294, 384, 678, 685
FaqI GGGAC 1 cut(s) 261
FatI CATG 4 cut(s) 292, 382, 676, 683
FauI CCCGC 1 cut(s) 400
FblI GTMKAC 1 cut(s) 594
Fnu4HI GCNGC 3 cut(s) 498, 707, 716
FokI GGATG 4 cut(s) 281, 506, 526, 670
Fsp4HI GCNGC 3 cut(s) 498, 707, 716
FspBI CTAG 2 cut(s) 483, 727
GluI GCNGC 3 cut(s) 498, 707, 716
GsaI CCCAGC 1 cut(s) 575
HaeIII GGCC 2 cut(s) 180, 666
HapII CCGG 1 cut(s) 301
HgaI GACGC 1 cut(s) 449
Hin1I GRCGYC 1 cut(s) 198
Hin1II CATG 4 cut(s) 296, 386, 680, 687
HinfI GANTC 4 cut(s) 356, 378, 478, 608
HpaII CCGG 1 cut(s) 301
HphI GGTGA 3 cut(s) 53, 122, 593
Hpy166II GTNNAC 2 cut(s) 218, 595
Hpy188I TCNGA 4 cut(s) 94, 196, 208, 510
Hpy8I GTNNAC 2 cut(s) 218, 595
Hpy99I CGWCG 3 cut(s) 94, 101, 104
HpyAV CCTTC 5 cut(s) 168, 191, 195, 613, 655
HpyCH4III ACNGT 2 cut(s) 257, 275
HpyCH4IV ACGT 2 cut(s) 144, 198
HpyCH4V TGCA 7 cut(s) 191, 473, 488, 500, 523, 554, 706
HpyF10VI GCNNNNNNNGC 5 cut(s) 305, 494, 576, 712, 715
HpyF3I CTNAG 2 cut(s) 366, 509
HpySE526I ACGT 2 cut(s) 144, 198
Hsp92I GRCGYC 1 cut(s) 198
Hsp92II CATG 4 cut(s) 296, 386, 680, 687
Kzo9I GATC 2 cut(s) 583, 623
Lsp1109I GCAGC 2 cut(s) 484, 718
LweI GCATC 2 cut(s) 200, 484
MaeI CTAG 2 cut(s) 483, 727
MaeII ACGT 2 cut(s) 144, 198
MaeIII GTNAC 4 cut(s) 110, 119, 410, 433
MalI GATC 2 cut(s) 585, 625
MboI GATC 2 cut(s) 583, 623
MflI RGATCY 1 cut(s) 623
MhlI GDGCHC 1 cut(s) 301
MlyI GAGTC 1 cut(s) 365
MmeI TCCRAC 3 cut(s) 72, 355, 446
MspA1I CMGCKG 1 cut(s) 35
MspI CCGG 1 cut(s) 301
MspR9I CCNGG 2 cut(s) 20, 301
MvaI CCWGG 1 cut(s) 20
MwoI GCNNNNNNNGC 5 cut(s) 305, 494, 576, 712, 715
NciI CCSGG 1 cut(s) 301
NdeII GATC 2 cut(s) 583, 623
NlaIII CATG 4 cut(s) 296, 386, 680, 687
NlaIV GGNNCC 2 cut(s) 277, 298
NmuCI GTSAC 2 cut(s) 110, 119
PcsI WCGNNNNNNNCGW 1 cut(s) 204
PfeI GAWTC 3 cut(s) 378, 478, 608
PkrI GCNGC 3 cut(s) 499, 708, 717
PleI GAGTC 1 cut(s) 364
PpsI GAGTC 1 cut(s) 364
PshAI GACNNNNGTC 1 cut(s) 117
Psp6I CCWGG 1 cut(s) 18
PspEI GGTNACC 2 cut(s) 110, 410
PspFI CCCAGC 1 cut(s) 571
PspGI CCWGG 1 cut(s) 18
PspN4I GGNNCC 2 cut(s) 277, 298
PspPI GGNCC 3 cut(s) 218, 275, 664
PstI CTGCAG 1 cut(s) 502
PsuI RGATCY 1 cut(s) 623
RsaI GTAC 2 cut(s) 246, 682
RsaNI GTAC 2 cut(s) 245, 681
SatI GCNGC 3 cut(s) 498, 707, 716
Sau3AI GATC 2 cut(s) 583, 623
Sau96I GGNCC 3 cut(s) 218, 275, 664
SchI GAGTC 1 cut(s) 365
ScrFI CCNGG 2 cut(s) 20, 301
SduI GDGCHC 1 cut(s) 301
SfaNI GCATC 2 cut(s) 200, 484
SfcI CTRYAG 3 cut(s) 348, 498, 591
SinI GGWCC 2 cut(s) 218, 275
SmlI CTYRAG 1 cut(s) 447
SmoI CTYRAG 1 cut(s) 447
SsiI CCGC 5 cut(s) 33, 64, 221, 407, 579
SspMI CTAG 2 cut(s) 483, 727
StyD4I CCNGG 2 cut(s) 18, 299
TaaI ACNGT 2 cut(s) 257, 275
TaiI ACGT 2 cut(s) 147, 201
TfiI GAWTC 3 cut(s) 378, 478, 608
TseFI GTSAC 2 cut(s) 110, 119
TseI GCWGC 3 cut(s) 497, 706, 715
Tsp45I GTSAC 2 cut(s) 110, 119
TspDTI ATGAA 2 cut(s) 399, 674
TspGWI ACGGA 1 cut(s) 124
VpaK11BI GGWCC 2 cut(s) 218, 275
XcmI CCANNNNNNNNNTGG 1 cut(s) 674
XmiI GTMKAC 1 cut(s) 594
XspI CTAG 2 cut(s) 483, 727
ZraI GACGTC 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.